Cell Biology Overview - Lecture 2

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Questions and Answers

What is the primary function of microtubules within a cell?

  • Provide shape and movement
  • Act as tracks for intracellular transport (correct)
  • Give mechanical support
  • Facilitate transcription

Which process occurs in the cytosol?

  • Translation (correct)
  • DNA synthesis
  • Transcription
  • DNA replication

What is the role of telomerase in DNA replication?

  • Extends the 3’ end of the lagging strand (correct)
  • Catalyzes the formation of hydrogen bonds
  • Synthetizes RNA primers
  • Replaces RNA primers with DNA

What type of bonds connect adenine and thymine in DNA?

<p>Hydrogen bonds (2) (C)</p> Signup and view all the answers

What is the correct order of the flow of genetic information in the central dogma of molecular biology?

<p>DNA → RNA → Protein (D)</p> Signup and view all the answers

What problem arises during the replication of the lagging strand?

<p>Loss of DNA with each division (C)</p> Signup and view all the answers

What component of DNA provides its structural integrity?

<p>Deoxynucleotides (C)</p> Signup and view all the answers

How are the two DNA strands oriented relative to one another?

<p>Antiparallel to each other (A)</p> Signup and view all the answers

What role do cohesins play during cell division?

<p>They hold sister chromatids together. (D)</p> Signup and view all the answers

Which stage of mitosis is characterized by the alignment of chromosomes at the metaphase plate?

<p>Metaphase (A)</p> Signup and view all the answers

What is the primary function of the kinetochores during cell division?

<p>They attach microtubules to chromosomes. (B)</p> Signup and view all the answers

What triggers the separation of chromatids during anaphase?

<p>APC/C activation (D)</p> Signup and view all the answers

In which phase do the centrosomes migrate to opposite sides of the nucleus?

<p>Prophase (D)</p> Signup and view all the answers

How does cytokinesis differ between animal and plant cells?

<p>Animal cells split through a contractile ring; plant cells form a new cell wall. (C)</p> Signup and view all the answers

Which of the following microtubules provides structural integrity to the mitotic spindle?

<p>Interpolar microtubules (A)</p> Signup and view all the answers

What happens during telophase in mitosis?

<p>Chromosomes decondense and nuclear envelopes reform. (B)</p> Signup and view all the answers

What is the primary function of a promoter in gene expression?

<p>To provide a binding site for RNA polymerase (A)</p> Signup and view all the answers

Which component is part of eukaryotic gene regulation but not prokaryotic?

<p>RNA Polymerase II (D)</p> Signup and view all the answers

In the context of the Lac Operon, what role does glucose play?

<p>It represses transcription of the operon (B)</p> Signup and view all the answers

What is the role of enhancers in eukaryotic gene regulation?

<p>They regulate gene expression from a distance (B)</p> Signup and view all the answers

How do repressors function in prokaryotic gene regulation?

<p>They block RNA polymerase from binding to promoters (D)</p> Signup and view all the answers

What is the significance of enhancers in the evolution of vertebrate body plans?

<p>They allow for the tweaking of gene expression patterns (D)</p> Signup and view all the answers

Which of the following accurately describes the Mediator complex in eukaryotic gene expression?

<p>It is essential for transcription initiation (D)</p> Signup and view all the answers

What happens to transcription when lactose is present in the environment of a bacterium using the Lac Operon?

<p>Lactose binds to the Lac repressor and releases it (C)</p> Signup and view all the answers

What is the primary significance of Hox genes across bilaterally symmetric animals?

<p>They demonstrate shared molecular principles in animal development. (A)</p> Signup and view all the answers

What role do maternal inputs play in zygotic gene expression?

<p>They establish gradients that direct zygotic gene expression. (D)</p> Signup and view all the answers

Which of the following represents the role of VegT in embryonic development?

<p>It activates Nodal to induce mesoderm formation. (C)</p> Signup and view all the answers

How does fertilization influence the development in Xenopus laevis?

<p>It triggers cortical rotation leading to the gray crescent formation. (B)</p> Signup and view all the answers

What happens at the animal pole of Xenopus laevis during development?

<p>It differentiates into the ectoderm, which includes skin and nervous system. (A)</p> Signup and view all the answers

What is the primary function of the Spemann-Mangold Organizer (SMO) in vertebrate body plan establishment?

<p>To regulate signaling events that establish body axes. (D)</p> Signup and view all the answers

Which mechanism assists in moving Wnt11 to the future dorsal side during cortical rotation?

<p>Kinesin movement along microtubules. (B)</p> Signup and view all the answers

What does the marginal zone, or equatorial region, become during development?

<p>Mesoderm. (C)</p> Signup and view all the answers

What is the primary role of tight junctions in epithelial cells?

<p>Preventing solute diffusion between cells. (B)</p> Signup and view all the answers

What type of junction connects actin filaments of adjacent cells?

<p>Adherens Junctions (A)</p> Signup and view all the answers

What property do cadherins depend on for their cell-cell adhesion function?

<p>Calcium ions (Ca²⁺) (B)</p> Signup and view all the answers

Which of the following components do integrins connect to the cytoskeleton?

<p>Extracellular matrix components (C)</p> Signup and view all the answers

What occurs during the epithelial-mesenchymal transition (EMT)?

<p>Epithelial cells lose adhesion and become migratory. (C)</p> Signup and view all the answers

Which of the following best describes the role of cadherins in neural tube formation?

<p>They maintain cohesion within the neural tube. (A)</p> Signup and view all the answers

What is NOT a function of the extracellular matrix (ECM)?

<p>Enable DNA replication (A)</p> Signup and view all the answers

Which type of junction is primarily responsible for cell communication?

<p>Gap Junctions (B)</p> Signup and view all the answers

What role does Wnt11 play in the formation of the Spemann-Mangold Organizer?

<p>It specifies the dorsal fate via the Wnt signaling pathway. (D)</p> Signup and view all the answers

What happens when the Spemann-Mangold Organizer is transplanted?

<p>It can induce a secondary body axis. (A)</p> Signup and view all the answers

How do inhibitors like Chordin and Noggin function in the context of the organizer?

<p>They diffuse to the ventral side creating a BMP activity gradient. (C)</p> Signup and view all the answers

What does high BMP activity generally lead to in terms of tissue structure?

<p>Induction of ventral structures. (B)</p> Signup and view all the answers

Which of the following statements is accurate regarding the evolutionary conservation in vertebrates?

<p>Similar developmental mechanisms are shared among vertebrates. (D)</p> Signup and view all the answers

Which cellular behaviors are essential for morphogenesis?

<p>Movement, adhesion, and shape changes. (A)</p> Signup and view all the answers

What characterizes epithelial cells compared to mesenchymal cells?

<p>They have a polarized structure with distinct apical and basal sides. (C)</p> Signup and view all the answers

What is one of the main roles of the organizer during development?

<p>To create a balance between dorsal and ventral characteristics. (C)</p> Signup and view all the answers

Flashcards

Cohesins

Proteins that bind sister chromatids together during mitosis, ensuring accurate chromosome separation.

Centrosomes

The duplicated 'anchors' for spindle fibers in mitosis, consisting of two centrioles.

Astral Microtubules

Microtubules that extend outward from the centrosomes during mitosis, helping to position the spindle within the cell.

Kinetochore Microtubules

Microtubules that attach to chromosomes at the kinetochore during mitosis, pulling them apart.

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Interpolar Microtubules

Microtubules that overlap in the center of the spindle during mitosis, providing structural integrity.

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Prophase

The stage of mitosis where chromosomes condense and become visible, centrosomes migrate, and the spindle begins to form.

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Prometaphase

The stage of mitosis where the nuclear envelope breaks down, microtubules attach to kinetochores, and chromosomes align at the metaphase plate.

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Metaphase

The stage of mitosis where chromosomes are aligned at the metaphase plate, ensuring even distribution to daughter cells.

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DNA Replication: What is it?

The process of DNA replication involves copying the entire genome, ensuring that each new cell receives a complete set of genetic information.

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DNA Polymerase: The Builder

DNA polymerase is the enzyme responsible for synthesizing new DNA strands, adding nucleotides one by one, following the base pairing rules. It builds DNA in the 5' to 3' direction starting from an existing primer.

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Primer: The Starter

Short RNA sequences that provide a free 3'-OH group essential for DNA polymerase to start adding nucleotides. They act as starting points for DNA synthesis.

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Leading Strand: Continuous Synthesis

The leading strand is synthesized continuously as DNA polymerase moves along the template in the 5' to 3' direction.

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Lagging Strand: Fragmentation

The lagging strand is synthesized in short fragments called Okazaki fragments. This is because DNA polymerase can only build in the 5' to 3' direction. Each fragment requires a new primer.

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Telomerase: Protecting Ends

A special enzyme that adds repetitive sequences (telomeres) to the ends of chromosomes, counteracting the shortening that occurs during DNA replication. It extends the 3' end using an RNA template.

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Central Dogma of Molecular Biology: Flow of Information

The central dogma describes the flow of genetic information in living organisms: DNA replicates itself, DNA is transcribed into RNA, and RNA translates into proteins.

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Proteins: The Workers

Proteins are essential for various cellular functions, including structure, transport, and catalysis. They're produced through translation, where the genetic information encoded in mRNA is used to assemble a specific protein.

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Promoter

A DNA sequence where RNA polymerase binds to initiate transcription. It acts like a 'parking spot' for the transcription machinery.

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Terminator

A DNA region that signals the end of transcription, like a 'stop sign' on a road.

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Regulators (Repressors & Activators)

Proteins that bind to DNA and regulate gene expression, either by promoting (activators) or blocking (repressors) RNA polymerase binding.

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Lac Operon

A complex in bacteria that controls the expression of genes needed for lactose metabolism. It is only active when lactose is present and glucose is absent.

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RNA Polymerase II

The enzyme responsible for transcribing DNA into RNA in eukaryotes. It doesn't directly bind to DNA like in prokaryotes, relying on transcription factors.

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Promoters (e.g., TATA box)

Specific DNA sequences that act as binding sites for transcription factors. They recruit the RNA polymerase II complex to initiate transcription.

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Enhancers

Distant DNA regions that bind regulatory proteins to control gene expression. They can activate or repress transcription by interacting with the RNA polymerase II machinery via DNA looping.

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Mediator Complex

A complex of proteins that act as a 'communication hub' between enhancers and the RNA polymerase II machinery.

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Tight Junctions

Cellular junctions that prevent diffusion of molecules between cells, like a tight seal between bricks in a wall.

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Gap Junctions

Junctions that allow communication between cells by passing small molecules through channels.

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Adherens Junctions

Junctions that connect actin filaments of adjacent cells using cadherin proteins.

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Desmosomes

Junctions that link intermediate filaments of adjacent cells using cadherin proteins.

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Hemidesmosomes

Junctions that anchor epithelial cells to the basal lamina, the underlying layer of the tissue.

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Extracellular Matrix (ECM)

The structural support network surrounding cells, composed of collagen, laminin, fibronectin, and proteoglycans.

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Integrins

Transmembrane receptors that connect ECM components to the intracellular cytoskeleton, acting as bridges between the cell and its environment.

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Wnt11

A gene that specifies the future dorsal side of the embryo in Xenopus laevis. It is initially localized in the cortical cytoplasm and transported to the future dorsal side by microtubule bundles and kinesin.

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Vegetal Pole

This region of the Xenopus laevis embryo contains maternal mRNA and proteins that are crucial for development.

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VegT

A transcription factor that specifies the endoderm autonomously in Xenopus laevis.

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Spemann-Mangold Organizer (SMO)

A structure discovered by Spemann and Mangold, found in the dorsal lip of the blastopore in amphibian embryos. It has the ability to induce the formation of a second body axis.

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Kinesin

A protein that acts as a motor for the transport of Wnt11 along microtubule bundles during cortical rotation in Xenopus laevis.

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Cortical Rotation

The process where the cytoplasm of the Xenopus laevis egg rotates, leading to the formation of the gray crescent and the specification of the future dorsal side.

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Nodal

A transcription factor that, along with VegT, plays a role in mesoderm induction in Xenopus laevis.

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Xenopus laevis

A model organism for vertebrate developmental studies due to its large eggs, rapid development, and the discovery of the Spemann-Mangold Organizer.

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Morphogenesis

The process that generates organized forms during development. It involves cellular behaviors like movement, adhesion, and shape changes, as well as interactions between specialized cell types.

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Epithelial cells

A type of cell found in tissues that are tightly connected and form sheets or tubes. They have distinct apical and basal surfaces.

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Mesenchymal cells

Loosely connected cells that can move around and invade other tissues. They are important for processes like migration, cell signaling, and creating new tissue.

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BMP4

A protein family involved in embryonic development. They influence cell fate and pattern formation along the dorsal-ventral axis.

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Chordin and Noggin

Molecules secreted by the SMO that inhibit the activity of BMP4. They help establish the dorsal-ventral axis by creating a gradient of BMP activity.

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Mechanism of dorsal-ventral axis formation

The process by which the SMO establishes the dorsal-ventral axis. Chordin and Noggin inhibit BMP4, creating a gradient of BMP activity. High BMP activity leads to ventral structures, while low BMP activity leads to dorsal structures.

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Study Notes

Cell Biology Overview

  • Lecture 2 provides a detailed overview of cell biology fundamentals, including the discovery of cells, cell theory, microscopy, and organelles.

Discovery of Cells and Cell Theory

  • Invention of the microscope in the 17th century led to the discovery of cells.
  • All living organisms are made of cells.
  • Cells are the basic unit of life.
  • Cells arise from pre-existing cells.
  • Hereditary information passes from cell to cell.
  • All cells have the same basic chemical composition.
  • Energy flow occurs within cells.

Cell Sizes and Microscopy

  • Small bacteria: ~1 µm.
  • Typical vertebrate cells: ~10 μm.
  • Organelles: 1-2 μm.
  • Ribosomes: ~25 nm.
  • Light Microscope: Resolution ~0.2 µm; used for observing cells and larger organelles.
  • Transmission Electron Microscopy (TEM): Resolution ~nm; reveals fine cellular details like ribosomes.
  • Immunofluorescence Microscopy: Detects specific proteins in cells.
  • GFP Tagging: Revolutionized cell biology by allowing protein localization in living cells.

Prokaryotes vs. Eukaryotes

  • Prokaryotes: Include bacteria and archaea.
  • Eukaryotes: Include fungi, animals, and plants.
  • Genetic material in prokaryotes is in the cytoplasm, while eukaryotes enclose genetic material in a nucleus with a double membrane.
  • Eukaryotes have membrane-bound organelles for specialized functions.

Organelles and Their Functions

  • Nucleus: Double membrane with nuclear pores for molecular exchange; encloses DNA.
  • Mitochondria: Double membrane organelles producing ATP; evolved from engulfed bacteria, contain their own DNA.
  • Chloroplasts: Found in plants and algae; use light energy to produce energy-rich molecules while consuming CO2 and releasing O2, evolved from photosynthetic bacteria.
  • Endoplasmic Reticulum (ER): Synthesizes lipids and proteins for secretion.
  • Golgi Apparatus: Modifies, sorts, and packages proteins and lipids for secretion or use within the cell.
  • Cytosol: Surrounds organelles, accounting for ~50% of cell volume; site of many biochemical reactions, including protein synthesis.
  • Cytoskeleton: Cellular framework made of microfilaments (actin filaments), microtubules, and intermediate filaments; essential for cell shape, structural integrity, and internal organization.

Central Dogma of Molecular Biology

  • DNA --> RNA --> Protein
  • Replication, transcription, and translation occur in the cell
  • Replication and Transcription: Occur in the nucleus.
  • Translation: Occurs in the cytosol.

Cellular Composition

  • Cells are ~70% water.
  • Major macromolecules include proteins (~15%), RNA (~6%), and DNA (~1%).
  • Other components: Polysaccharides and phospholipids (~4%).
  • Small molecules (~4%).

DNA Structure and Synthesis

  • DNA is made of deoxynucleotides (bases + deoxyribose + phosphate).
  • Bases: Pyrimidines (Cytosine, Thymine) – single rings; Purines (Adenine, Guanine) – double rings.
  • DNA strands have polarity: 5' End: Phosphate group; 3' End: Free hydroxyl (-OH) group.

Other key concept summaries

  • Additional lectures cover RNA, transcription, protein folding and structure, protein synthesis, and the role of organelles in these cellular processes

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