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Questions and Answers

Consider a newly discovered extremophile inhabiting deep-sea hydrothermal vent fluids (120°C, pH 2.0, high metal content). Spectroscopic analysis reveals a unique cell wall structure devoid of peptidoglycan and pseudomurein. Phylogenetic analysis indicates a distant relationship to known archaeal lineages. Based solely on this information, which metabolic strategy is LEAST plausible for this organism?

  • Lithotrophic oxidation of reduced sulfur compounds, coupling energy production to ATP synthesis via an electron transport chain.
  • Anaerobic respiration utilizing heavy metals as terminal electron acceptors, facilitating energy conservation through chemiosmosis.
  • Chemoautotrophic carbon fixation via a modified Wood-Ljungdahl pathway, utilizing hydrogen gas as an electron donor.
  • Photosynthesis employing a novel pigment capable of capturing energy from geothermal radiation, directly phosphorylating ADP. (correct)

A researcher isolates a novel unicellular organism from a soil sample. Initial characterization reveals the presence of a membrane-bound nucleus and rigid cell walls containing chitin. Metabolic studies demonstrate that the organism obtains nutrients by secreting extracellular enzymes and absorbing the resulting breakdown products. Phylogenetic analysis places the organism within the Eukaryota domain but distinct from known fungal lineages. Which of the following cellular structures would be LEAST expected to be observed in this organism?

  • A Golgi apparatus responsible for modifying and sorting proteins destined for secretion.
  • Ribosomes structurally homologous to bacterial ribosomes, sensitive to antibiotics like streptomycin. (correct)
  • Mitochondria exhibiting cristae with unique phospholipid compositions.
  • An extensive endoplasmic reticulum network involved in protein synthesis and lipid metabolism.

Following an outbreak of a previously unknown disease characterized by rapid neurological decline, virological analysis reveals the presence of novel, enveloped RNA virus exhibiting tropism for neuronal cells. Further investigation reveals that the viral genome integrates into the host cell DNA via a reverse transcriptase enzyme. Given these characteristics, which of the following mechanisms of viral entry into the host cell is MOST likely employed by this virus?

  • Direct penetration of the host cell membrane via a hydrophobic fusion peptide.
  • Injection of the viral genome directly into the cytoplasm through a phage-like tail structure.
  • Receptor-mediated endocytosis followed by fusion with the endosomal membrane. (correct)
  • Attachment to host cell surface receptors via capsid proteins, triggering a conformational change that facilitates direct entry.

A microbiologist is studying a newly discovered bacterium that thrives in the highly acidic environment of a mine drainage site (pH 2.5). The bacterium is found to actively transport protons out of the cell. What is the MOST likely mechanism this bacterium employs to maintain its intracellular pH at a near-neutral level?

<p>Active transport of protons out of the cell, coupled with the import of cations via antiport mechanisms. (B)</p> Signup and view all the answers

A novel antimicrobial compound is discovered that inhibits the function of SecA in bacteria. What cellular process will be MOST directly affected by this compound?

<p>Export of proteins across the cytoplasmic membrane. (A)</p> Signup and view all the answers

In designing a synthetic growth medium for a fastidious bacterium, which of the following factors is MOST crucial to consider for ensuring optimal growth?

<p>The inclusion of specific growth factors or essential nutrients that the bacterium cannot synthesize. (C)</p> Signup and view all the answers

A researcher is investigating different methods of sterilizing heat-labile solutions. Considering the need to maintain the integrity of proteins and other sensitive biomolecules, which method is MOST appropriate?

<p>Filtration through a 0.22 μm pore-size membrane. (A)</p> Signup and view all the answers

Escherichia coli and Staphylococcus aureus are both found in the human body, with E. coli primarily residing in the large intestine and S. aureus commonly found on the skin. If both organisms were present in a blood sample, what would be the MOST likely method to differentiate between them, assuming Gram staining is inconclusive due to technical error?

<p>Analyzing the fatty acid composition of the cell membranes via gas chromatography-mass spectrometry (GC-MS). (D)</p> Signup and view all the answers

A novel virus is discovered whose replication strategy involves the synthesis of a negative-sense RNA molecule from its DNA genome. This RNA molecule then serves as a template for the production of mRNA. Which of the following enzymes is MOST likely responsible for the synthesis of the negative-sense RNA?

<p>DNA-dependent RNA polymerase. (B)</p> Signup and view all the answers

Consider a hypothetical scenario where a novel, highly virulent strain of bacteria has decimated the gut microbiota of a patient undergoing intensive chemotherapy. Subsequent to this, the patient develops severe malabsorption issues and a pronounced deficiency in coagulation factors. Which of the following interventions would most directly address the underlying pathophysiology, considering both the immediate and long-term consequences?

<p>Initiating a fecal microbiota transplant (FMT) from a meticulously screened, healthy donor, alongside targeted supplementation of vitamin K and selected B vitamins. (D)</p> Signup and view all the answers

A research team is investigating the efficacy of a genetically modified Bacillus thuringiensis (Bt) strain, engineered to express a novel insecticidal protein with an enhanced binding affinity for lepidopteran gut receptors. During field trials, they observe a gradual decline in the insecticidal activity against the target pest, despite sustained expression of the modified Bt toxin. Which of the following mechanisms MOST likely contributes to this reduced efficacy?

<p>Selective pressure exerted by the modified Bt toxin, resulting in the proliferation of resistant insect genotypes possessing altered gut receptors with reduced toxin binding affinity. (D)</p> Signup and view all the answers

In a bioremediation project targeting a site heavily contaminated with both petroleum hydrocarbons and heavy metals, a consortium of microorganisms is being utilized. Pseudomonas putida is employed for hydrocarbon degradation, while Desulfovibrio species are intended for sulfate reduction, leading to heavy metal precipitation as sulfides. However, the efficiency of heavy metal removal is significantly lower than predicted. Which of the following factors could MOST plausibly explain this discrepancy?

<p>The pH of the soil is too acidic, preventing the activity of sulfidogenic bacteria. (A)</p> Signup and view all the answers

A researcher is attempting to engineer Escherichia coli to produce a complex, glycosylated human therapeutic protein. While the recombinant DNA technology is successful in introducing the gene, the expressed protein lacks proper glycosylation and is rapidly degraded by intracellular proteases. Which of the following strategies would MOST effectively address both the glycosylation and stability issues?

<p>Switching to a eukaryotic expression system, such as yeast or mammalian cells, which possess the necessary machinery for glycosylation and protein folding. (D)</p> Signup and view all the answers

A patient with a history of recurrent Clostridioides difficile infection (CDI) undergoes a second fecal microbiota transplant (FMT). Initially, the FMT is successful, and the patient's symptoms resolve. However, several months later, the patient experiences a relapse of CDI, and genomic analysis reveals that the C. difficile strain is genetically distinct from the original infecting strain. Which of the following scenarios MOST accurately describes the MOST likely cause of the recurrent CDI?

<p>The patient acquired a new <em>C. difficile</em> strain from an external environmental source, such as contaminated healthcare facilities or food products, despite the protective effects of the FMT. (D)</p> Signup and view all the answers

Consider a newly discovered bacterium isolated from a deep-sea hydrothermal vent. Genomic analysis reveals a novel metabolic pathway utilizing sulfur compounds for energy production. The scientific community is debating the appropriate nomenclature for this organism. Which of the following naming conventions would MOST rigorously adhere to both the historical precedents established by Linnaeus and the modern standards of microbial taxonomy, assuming the bacterium's unique metabolic process is deemed a defining characteristic?

<p>Applying a purely descriptive name based on its habitat and metabolic function (e.g., <em>Sulfurihydrothermalis profundi</em>) without considering any individual scientist's contribution to its discovery. (A)</p> Signup and view all the answers

Imagine a scenario where a previously unknown species of microscopic algae is discovered in an extremely isolated Antarctic lake. This algae exhibits a unique photosynthetic pathway that produces a novel polymer with potential applications in biodegradable plastics. Given the imperative for accurate and globally recognized classification which action would MOST comprehensively fulfill the dual requirements of immediate scientific communication and long-term taxonomic stability?

<p>Deposit a representative culture in multiple internationally recognized culture collections, coupled with simultaneous publication of a detailed taxonomic description, phylogenetic analysis, and proposed scientific name in a peer-reviewed journal. (B)</p> Signup and view all the answers

Consider a research team investigating a polymicrobial infection in a patient with a compromised immune system. Initial cultures reveal the presence of Staphylococcus aureus alongside several other uncharacterized bacterial morphotypes. Selective inhibition of S. aureus growth with targeted bacteriophages leads to a paradoxical INCREASE in the overall severity of the infection. Which of the following hypotheses BEST explains this counterintuitive observation, considering the ecological dynamics of microbial communities?

<p>The selective elimination of <em>S. aureus</em> disrupted a competitive interaction, allowing the other bacteria to express virulence factors that were previously suppressed in the presence of <em>S. aureus</em>. (B)</p> Signup and view all the answers

A newly discovered archaeon is found to thrive in highly acidic, metal-rich mine drainage. Its cell membrane is composed of unique tetraether lipids forming a monolayer. Genomic analysis reveals genes encoding for both aerobic respiration and anaerobic metal reduction. Which metabolic strategy would MOST likely be employed when the archaeon is subjected to fluctuating environmental conditions transitioning between oxygenated and anoxic zones within the mine drainage?

<p>Facultative metabolic switching, employing aerobic respiration when oxygen is available and transitioning to anaerobic metal reduction when oxygen is depleted, optimizing energy generation based on redox potential. (D)</p> Signup and view all the answers

In a hypothetical scenario, scientists engineer a synthetic microbe capable of degrading highly recalcitrant plastics in marine environments. However, subsequent ecological modeling predicts that widespread deployment of this microbe could lead to unforeseen consequences due to its metabolic byproducts disrupting biogeochemical cycles. Which of the following represents the MOST significant potential long-term environmental risk associated with the uncontrolled release of such a synthetic organism?

<p>The release of large quantities of methane and other greenhouse gasses as metabolic byproducts, accelerating global warming and ocean acidification, as well as the potential for the synthetic microbe to outcompete algae. (D)</p> Signup and view all the answers

Consider a bioreactor designed for the mass production of a recombinant protein using a genetically modified bacterium. The bioreactor is inoculated with a pure culture, and environmental parameters (temperature, pH, dissolved oxygen) are meticulously controlled. Despite optimal conditions, the culture's growth rate unexpectedly plateaus, and the production of the target protein declines drastically after a certain period. Metagenomic analysis of the bioreactor reveals the presence of a diverse community of bacteriophages. Which of the following strategies would be the MOST effective and sustainable long-term approach to mitigate phage contamination and restore recombinant protein production in the bioreactor?

<p>Rotating the host bacterium with a series of antigenically distinct strains that are resistant to different bacteriophages, thereby reducing the selective pressure for phage adaptation and maintaining consistent protein production. (A)</p> Signup and view all the answers

In a scenario where a novel human pathogen emerges with a complex life cycle involving both bacterial and fungal stages, traditional diagnostic methods based on identifying single-celled organisms prove inadequate. Postmortem analysis reveals the presence of filamentous structures intertwined with bacterial colonies in affected tissues. To definitively confirm the causative agent and elucidate its pathogenic mechanisms, which advanced multi-omics approach would yield the MOST comprehensive and actionable insights?

<p>Employing spatial transcriptomics to map the expression of both bacterial and fungal genes within the infected tissues, coupled with proteomics to identify secreted proteins mediating host-pathogen interactions and metabolomics to profile altered metabolic pathways. (D)</p> Signup and view all the answers

Consider a hypothetical scenario where Spallanzani, deviating slightly from his original experiment, used a nutrient solution inherently resistant to standard autoclaving temperatures (121°C). If, after sealing and boiling this solution, microbial growth was still observed, what nuanced conclusion could be drawn regarding spontaneous generation versus biogenesis, acknowledging the limitations of the experimental design?

<p>It suggests potential contamination despite the boiling process or the presence of exceptionally thermophilic or barophilic microorganisms capable of surviving and proliferating under the experimental conditions, thus not directly supporting spontaneous generation. (C)</p> Signup and view all the answers

Imagine Pasteur's S-shaped flask experiment is replicated inside a hermetically sealed spacecraft orbiting Earth, utilizing a self-sustaining, closed-loop ecosystem. If, after an extended period, microbial life is observed within the nutrient broth, what sophisticated inferences could be made, considering the absence of direct terrestrial contamination and the principles of biogenesis?

<p>The observation suggests a flaw in the sterilization protocol or the presence of highly resilient, dormant microbial forms within the initial system, indicating potential limitations in maintaining a truly sterile environment, and adherence to Biogenesis. (D)</p> Signup and view all the answers

Consider a scenario where a novel extremophile bacterium is discovered, exhibiting metabolic activity solely through the fermentation of complex, non-reducing polysaccharides under high-pressure, anaerobic conditions deep within the Earth's crust. How would this discovery refine or challenge Pasteur's original observations regarding fermentation and spoilage?

<p>It would significantly expand the known scope of fermentation, indicating that fermentation processes can occur through diverse metabolic pathways beyond sugar catabolism, and in environmental extremes not initially considered by Pasteur. (B)</p> Signup and view all the answers

Building from Pasteur’s pasteurization method, imagine a new technique is developed that uses targeted bacteriophages, delivered via nano-encapsulation, to eliminate specific spoilage microorganisms in milk without altering its flavor or nutritional content. How does this innovative approach extend or depart from the fundamental principles of pasteurization?

<p>This approach represents a significant departure by employing biological agents for targeted microbial control, contrasting with the non-selective heat treatment of pasteurization, while still preventing spoilage. (B)</p> Signup and view all the answers

Suppose a research team discovers a class of archaea capable of incorporating atmospheric nitrogen directly into complex organic molecules at standard temperature and pressure, independent of the Haber-Bosch process or known nitrogen-fixing bacteria. How would this influence our comprehension of the 'Golden Age of Microbiology' and its established principles?

<p>This discovery would enhance the 'Golden Age of Microbiology' by showcasing the potential for new, sustainable biotechnological applications and expanding our understanding of microbial metabolic diversity and biogeochemical cycling. (D)</p> Signup and view all the answers

Imagine a situation where a previously unidentified virus is found to selectively target and eradicate biofilms formed by spoilage bacteria in a closed food processing system, enhancing food safety without affecting the beneficial microbial flora. Contrast this with Pasteur's methods of addressing spoilage.

<p>This represents a targeted, biological approach compared to Pasteur's broad-spectrum heat treatment. It conserves beneficial flora unlike pasteurization, which indiscriminately eliminates microbes. (C)</p> Signup and view all the answers

If a novel microbial consortium were engineered to convert plastic waste into biodegradable polymers through a fermentation process at ambient temperatures, how would this achievement redefine the scope and impact of Pasteur's initial work on fermentation?

<p>It would expand Pasteur's concept of fermentation to include the bioconversion of synthetic polymers, showcasing its potential in addressing contemporary environmental challenges like plastic pollution. (B)</p> Signup and view all the answers

Consider a newly discovered archaeon that employs a unique metabolic pathway involving the reduction of tellurite ($TeO_3^{2-}$) to elemental tellurium (Te) as a terminal electron acceptor in anaerobic respiration. How does this discovery challenge or expand upon the understanding of microbial respiration established during the Golden Age of Microbiology?

<p>It expands the understanding of microbial respiration by revealing novel terminal electron acceptors beyond oxygen, nitrate, and sulfate, thereby broadening the scope of microbial metabolism in extreme environments. (D)</p> Signup and view all the answers

Envision a scenario where synthetic biology is used to engineer a bacterium capable of producing a novel antimicrobial compound that is effective against multi-drug resistant pathogens, but which also disrupts essential symbiotic relationships within the human gut microbiome. How does this development complicate or redefine the principles established during the 'Golden Age of Microbiology' regarding immunity and antimicrobial drugs?

<p>It emphasizes the need for a more nuanced understanding of the complex interplay between antimicrobial interventions, the human microbiome, and overall health, moving beyond the simplistic 'one drug, one bug' paradigm of the 'Golden Age'. (C)</p> Signup and view all the answers

Consider a hypothetical situation where a researcher discovers a previously unknown mechanism of horizontal gene transfer between distantly related bacterial species, mediated by extracellular vesicles (EVs) that can traverse significant environmental barriers. How would this discovery challenge or refine established understandings of microbial evolution and adaptation that were nascent during the Golden Age of Microbiology?

<p>It would refine established understandings of horizontal gene transfer; current understandings primarily considered mechanisms that require close proximity and do not account for EVs. (B)</p> Signup and view all the answers

Semmelweis's advocacy of handwashing in the 1840s directly challenged prevailing medical theories of the time. Which of the following best encapsulates the paradigm his actions contested, considering the limited understanding of disease etiology at that point?

<p>The established miasmatic theory, which attributed disease transmission to noxious vapors emanating from decaying organic matter, precluding the recognition of direct human-to-human transfer. (A)</p> Signup and view all the answers

Consider a hypothetical scenario where Koch's postulates are applied to investigate a novel, slow-progressing neurological disorder in humans. The suspected causative agent is an unculturable, obligate intracellular parasite. Which modification to Koch's original postulates would be most essential to accommodate this etiological agent?

<p>Employing advanced molecular techniques, such as PCR and in-situ hybridization, to detect the presence of the agent's nucleic acid sequences in affected tissues, bypassing the need for pure culture isolation. (C)</p> Signup and view all the answers

In the historical context of chemotherapy, Ehrlich's concept of a 'magic bullet' represented a paradigm shift. How did this concept influence the development of chemotherapeutic agents, particularly in terms of their selectivity and mechanism of action?

<p>It spurred the development of agents exhibiting targeted toxicity towards pathogens, based on the principle of differential affinity for unique microbial structures or pathways, thereby minimizing harm to host cells. (A)</p> Signup and view all the answers

Fleming's serendipitous discovery of penicillin marked the dawn of the antibiotic era. Considering the contemporary state of microbiology and pharmacology, what was the most radical implication of this discovery for the treatment of infectious diseases?

<p>The demonstration that a naturally occurring substance produced by a microorganism could possess potent antibacterial activity, paving the way for the systematic screening of other microbes for novel therapeutic compounds. (C)</p> Signup and view all the answers

Jenner's pioneering work on vaccination against smallpox laid the foundation for modern immunology. From an immunological perspective, what is the most critical difference between Jenner's original method of using cowpox virus and contemporary vaccination strategies employing attenuated or inactivated pathogens?

<p>The use of a closely related, but less virulent, virus like cowpox to elicit cross-protective immunity against smallpox, capitalizing on shared antigenic determinants to generate a robust and long-lasting immune response. (C)</p> Signup and view all the answers

Consider the scenario where a novel bacterial species is isolated from a patient exhibiting symptoms of a previously uncharacterized disease. To definitively establish a causative link between the bacterium and the disease, stringent application of Koch's postulates is undertaken. However, ethical constraints preclude infecting human subjects. Which of the following strategies represents the most scientifically rigorous and ethically sound approach to satisfy Koch's postulates in this context?

<p>Utilizing a validated animal model that closely mimics the pathophysiology of the human disease to demonstrate that infection with the isolated bacterium induces comparable symptoms and pathological changes. (A)</p> Signup and view all the answers

Paul Ehrlich's 'magic bullet' concept revolutionized the approach to chemotherapy. Which of the following contemporary strategies for targeted drug delivery best embodies the spirit and aims of Ehrlich's original concept, while also addressing limitations inherent in early chemotherapeutic agents?

<p>Employing ligand-conjugated nanoparticles that selectively bind to receptors overexpressed on the surface of target cells, thereby enhancing drug accumulation at the site of action and minimizing off-target effects. (C)</p> Signup and view all the answers

Fleming's discovery of penicillin's antibacterial properties revolutionized medicine. However, widespread antibiotic use has led to the emergence of antibiotic-resistant bacteria. Which of the following mechanisms of antibiotic resistance represents the most significant challenge for the development of new antimicrobial agents, considering its potential for horizontal gene transfer and broad-spectrum resistance?

<p>Acquisition of plasmids carrying genes encoding enzymes that modify or degrade antibiotics, rendering them inactive or less effective, and readily spreading resistance genes among bacterial populations. (C)</p> Signup and view all the answers

Vaccination strategies have evolved significantly since Jenner's initial use of cowpox to protect against smallpox. Which of the following vaccine development approaches offers the greatest potential for eliciting broadly neutralizing antibodies against highly variable pathogens, such as influenza virus or HIV, and overcoming the challenges posed by antigenic drift and shift?

<p>Employing a prime-boost strategy that combines an initial immunization with a DNA vaccine encoding conserved viral antigens, followed by a boost with a recombinant protein subunit vaccine displaying multiple epitopes from different viral strains. (D)</p> Signup and view all the answers

Considering the historical progression from Semmelweis's handwashing advocacy to the development of modern antiseptics, what is the most significant advancement in infection control practices that has dramatically reduced the incidence of healthcare-associated infections (HAIs) in contemporary hospital settings, beyond simple antiseptic application?

<p>Implementing comprehensive, multimodal strategies that combine hand hygiene protocols, environmental disinfection measures, antimicrobial stewardship programs, and active surveillance systems to prevent and control the spread of pathogens. (C)</p> Signup and view all the answers

Flashcards

Microorganisms

Organisms too small to be seen without magnification.

Pathogens

Microbes that cause disease.

Decomposition

Microbes break down dead organisms and recycle nutrients.

Scientific Nomenclature

A system for assigning two names to each organism.

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Genus

The first name in the scientific nomenclature, always capitalized.

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Specific Epithet

The species name

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Escherichia coli

A bacterium named after Theodor Escherich that resides in the colon

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Bioremediation

Using microbes to break down or detoxify pollutants.

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Microbial Insect Pest Control

The use of microbes to control insect pests as an alternative to chemical pesticides.

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Biotechnology

Using microbes for practical applications like food production, and using recombinant DNA technology to produce proteins and vaccines.

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Normal Microbiota

Microbes that are normally present in and on the human body.

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Resistance in the Body

The body's ability to ward off disease through protective factors.

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Staphylo-coccus

Describes clustered spherical cells.

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Aureus

Describes gold-colored colonies.

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Abbreviating Scientific Names

Using the first letter of the genus and the full specific epithet after the first full use.

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Types of Microorganisms

Bacteria, Archaea, Fungi, Protozoa, Algae, Viruses, and Multicellular Animal Parasites.

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Bacteria

Single-celled prokaryotes with peptidoglycan cell walls that divide via binary fission.

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Archaea

Prokaryotes lacking peptidoglycan, often living in extreme environments.

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Fungi

Eukaryotes with chitin cell walls that absorb organic chemicals for energy. Can be unicellular (yeasts) or multicellular (molds, mushrooms).

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Protozoa

Eukaryotes that absorb/ingest organic chemicals; motile via pseudopods, cilia, or flagella; free-living or parasitic.

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Algae

Eukaryotes with cellulose cell walls that use photosynthesis for energy, producing oxygen and carbohydrates.

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Germ Theory of Disease

Disease is caused by microorganisms.

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Agostino Bassi

Showed fungus caused silkworm disease (1835).

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Ignaz Semmelweis

Advocated handwashing; reduced puerperal fever transmission in the 1840s.

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Joseph Lister

Used phenol (antiseptic) to prevent surgical wound infections.

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Koch's Postulates

Specific microbe causes a specific disease.

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Vaccination

Inoculating with cowpox to protect against smallpox.

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Chemotherapy

Treatment of disease using chemicals.

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Synthetic Drugs

Chemicals made in a lab to treat infectious disease.

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Antibiotics

Chemicals produced by microbes to kill other microbes.

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Alexander Fleming

Penicillium fungus killed S. aureus.

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Spallanzani's experiment (1765)

Heated sealed flasks of nutrient broth showed no microbial growth.

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Virchow's Biogenesis

Cells arise from pre-existing cells.

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Pasteur's experiment (1861)

Microorganisms are present in the air.

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Pasteur's S-shaped flasks

S-shaped flasks allowed air in but trapped microbes, preventing contamination of the broth.

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Pasteur's Conclusion

Microbes originate from air or fluids, not from spontaneous generation.

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Golden Age of Microbiology

A period of rapid advancements linking microbes to disease, immunity, and treatments.

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Fermentation

Microbial conversion of sugar to alcohol in the absence of air.

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Microbes and Spoilage

Microbial growth causes food spoilage.

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Wine Spoilage

Bacteria can spoil wine by converting alcohol to acetic acid.

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Pasteurization

Using heat to kill harmful bacteria in beverages.

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Study Notes

  • Microorganisms are too small to be seen with the unaided eye.
  • Microbes include bacteria, fungi, protozoa, microscopic algae, and viruses.
  • Some microbes are pathogenic which means they cause a disease.
  • Microbes decompose organic waste.
  • Microbes generate oxygen by photosynthesis.
  • Microbes produce chemical products like ethanol, acetone, and vitamins (B and K).
  • Microbes produce fermented foods such as vinegar, cheese, and bread.
  • Microbes produce products used in manufacturing (e.g., cellulose) and disease treatment (e.g., insulin).
  • Knowledge of microorganisms allows humans to prevent food spoilage, prevent disease, understand the causes and transmission of disease to prevent epidemics.

Designer Jeans: Made by Microbes?

  • Trichoderma fungus is responsible for denim fading.
  • Gluconacetobacter bacteria is responsible for cotton production.
  • Mushroom peroxidase is responsible for bleaching.
  • Escherichia coli bacteria is responsible for dye Indigo.
  • Bacterial polyhydroxyalkanoate is responsible for making plastic.

Naming and Classifying Microorganisms

  • Carolus Linnaeus established the system of scientific nomenclature in 1735.
  • Each organism has two names: the genus and the specific epithet (species name).
  • Scientific names are italicized or underlined
  • The genus is capitalized while the specific epithet is lowercase
  • Scientific names are "Latinized" and used worldwide and may be descriptive or honor a scientist

Escherichia coli

  • Escherichia coli Honors the discoverer, Theodor Escherich.
  • Escherichia coli describes the bacterium's habitat which is the large intestine, or colon.

Staphylococcus aureus

  • Staphylococcus aureus describes the clustered (staphylo-) spherical (coccus) cells.
  • Staphylococcus aureus describes the gold-colored (aureus) colonies.
  • After the first use, scientific names may be abbreviated with the first letter of the genus and the specific epithet.
  • Escherichia coli and Staphylococcus aureus are found in the human body.
  • E. coli is found in the large intestine and S. aureus is on skin.
  • Types of microorganisms are as follows: Bacteria, Archaea, Fungi, Protozoa, Algae, Viruses, Multicellular Animal Parasites.

Bacteria

  • Bacteria is characterized as Prokaryotes: "Prenucleus".
  • Bacteria has single-celled organisms.
  • Bacteria has Peptidoglycan cell walls.
  • Bacteria divides via binary fission.
  • Bacteria derives nutrition from organic or inorganic chemicals or photosynthesis.

Archaea

  • Archaea are Prokaryotes.
  • Archaea lacks peptidoglycan cell walls.
  • Archaea often live in extreme environments such as Methanogens, Extreme halophiles and Extreme thermophiles.

Fungi

  • Fungi have Eukaryotes with a distinct nucleus.
  • The cell walls contain chitin.
  • Fungi absorb organic chemicals for energy.
  • Yeasts are unicellular.
  • Molds and mushrooms are multicellular.
  • Molds consist of masses of mycelia, which are composed of filaments called hyphae.

Protozoa

  • Protozoa are Eukaryotes.
  • Protozoa absorb or ingest organic chemicals.
  • Protozoa may be motile via pseudopods, cilia, or flagella.
  • Protozoa can be Free-living or parasitic and derive nutrients from a living host.

Algae

  • Algae as Eukaryotes
  • Algae Cells walls contain cellulose.
  • Algae live in freshwater, saltwater, and soil.
  • Algae use photosynthesis for energy.
  • Algae's by-products include oxygen and carbohydrates.

Viruses

  • Viruses are Acellular
  • Viruses consist of DNA or RNA core.
  • The core of the virus is surrounded by a protein coat and the coat may be enclosed in a lipid envelope
  • Viruses can only replicate when they are in a living host cell and are inert outside living hosts as they are non-living.

Multicellular Animal Parasites

  • Multicellular Animal Parasites are Eukaryotes and Multicellular animals.
  • Multicellular Animal Parasites are not strictly microorganisms.
  • Parasitic flatworms and roundworms are called helminths and are of microscopic size in the stages in their life cycles

Classification of Microorganisms

  • Classification of Microorganisms was developed by Carl Woese.
  • There are Three domains based on cellular organization: Bacteria, Archaea, and Eukarya.
    • The domain Eukarya has Protists, Fungi, Plants and Animals

The First Observations

  • In 1665, Robert Hooke reported that living things are composed of little boxes, or "cells".
    • This marked the beginning of cell theory: All living things are composed of cells
  • From 1623–1673 Anton van Leeuwenhoek observed the first microbes.
    • Anton van Leeuwenhoek called the microbes "Animalcules" viewed through magnifying lenses (microscope).

The Debate over Spontaneous Generation

  • Spontaneous generation refers to the hypothesis that life arises from nonliving matter which proposes that a "vital force" is necessary for life
  • Biogenesis refers to the hypothesis that living cells arise only from preexisting living cells.
  • In 1668, Francesco Redi filled jars with decaying meat to prove Biogenesis.
    • Jars that were covered with fine net had No maggots.
    • Open jars had Maggots appear.
    • Sealed jars had No maggots.
  • In 1745, John Needham put boiled nutrient broth into covered flasks which resulted in Microbial growth.
  • In 1765, Lazzaro Spallanzani boiled nutrient solutions in sealed flasks with the conditions resulting in no microbial growth.

The Theory of Biogenesis

  • 1858: Rudolf Virchow stated that cells arise from preexisting cells
  • 1861: Louis Pasteur demonstrated that microorganisms are present in the air
    • Nutrient broth placed in flask, heated, NOT sealed resulted in Microbial growth.
    • Nutrient broth placed in flask, heated, then immediately sealed resulted in No microbial growth.
  • Pasteur demonstrated that microorganisms are present in the air
  • Pasteur used S-shaped flasks meant to keep microbes out but let air in
  • Broth in flasks showed no signs of life, and the neck of flask traps microbes due to the experiment
  • Microorganisms originate in air or fluids, not mystical forces.

The Golden Age of Microbiology

  • The Golden Age of Microbiology occurred from 1857-1914.
  • Beginning with Pasteur's work, discoveries included the relationship between microbes and disease, immunity, and antimicrobial drugs
  • Pasteur showed that microbes are responsible for fermentation
  • Fermentation is the microbial conversion of sugar to alcohol in the absence of air
  • Microbial growth is responsible for spoilage of food and beverages
  • Bacteria that use air spoil wine by turning it to vinegar which creates acetic acid
  • Pasteur demonstrated that spoilage bacteria could be killed by heat that was not hot enough to evaporate the alcohol in wine
  • Pasteurization is the application of high heat for a short time to kill harmful bacteria in beverages.
  • Louis Pasteur (1822-1895) demonstrated that life did not arise spontaneously from nonliving matter.

The Germ Theory of Disease

  • 1835: Agostino Bassi showed that a silkworm disease was caused by a fungus
  • 1865: Pasteur showed that another silkworm disease was caused by a protozoan
  • 1840s: Ignaz Semmelweis advocated handwashing to prevent transmission of puerperal fever from one obstetrical patient to another
  • Applying Pasteur's work that microbes are in the air , can spoil food , and cause animal diseases, Joseph Lister used the chemical antiseptic, phenol, to prevent surgical wound infections
  • Joseph Lister (1827-1912) performed surgery under aseptic conditions using using phenol which proved that microbes caused surgical wound infections
  • 1876: Robert Koch discovered that a bacterium causes anthrax and provided the experimental steps called, Koch's postulates, to demonstrate that a specific microbe causes a specific disease
  • Robert Koch (1843–1910) established experimental steps for directly linking a specific microbe to a specific disease.

Vaccination

  • In 1796 Edward Jenner inoculated a person with cowpox virus, who was then immune from smallpox
  • Vaccination is derived from the Latin word vacca, meaning cow
  • The protection from a vaccine is called immunity

The Birth of Modern Chemotherapy

  • Treatment of disease with chemicals (natural or synthetic) is called chemotherapy
  • Chemotherapeutic agents used to treat infectious disease can be synthetic drugs or antibiotics
  • Antibiotics are chemicals produced by bacteria and fungi that inhibit or kill other microbes

The First Synthetic Drugs

  • Quinine from tree bark was used to treat malaria
  • Paul Erlich speculated about a "magic bullet" that could destroy a pathogen without harming the host
  • 1910: Ehrlich developed the synthetic arsenic drug, salvarsan, to treat syphilis
  • 1930s: Sulfonamides were synthesized

A Fortunate Accident—Antibiotics

  • In 1928 Alexander Fleming accidently discovered the first antibiotic
  • Fleming observed that Penicillium fungus made an antibiotic, penicillin, that killed S. aureus
  • 1940s: Penicillin was tested clinically and mass-produced
  • Bacteriology is the study of bacteria.
  • Mycology is the study of fungi.
  • Parasitology is the study of protozoa and parasitic worms.
  • Immunology is the study of immunity.
  • Vaccines and interferons prevent and cure viral diseases.
  • In 1933 Rebecca Lancefield classified streptococci based on their cell wall components (variant within the species)
  • Virology is the study of viruses.
  • In 1892 Dmitri Iwanowski and in 1935 Wendell Stanley discovered the cause of mosaic disease of tobacco as a virus (TMV)
  • Electron microscopes study the structure of viruses in detail.

Recombinant DNA Technology

  • Microbial genetics is the study of how microbes inherit traits
  • Molecular biology is the study of how DNA directs protein synthesis
  • Genomics is the study of an organism's genes and has provided classifying microorganisms
  • Recombinant DNA: DNA made from two different sources: In the 1960s, Paul inserted animal DNA into bacterial DNA, and the bacteria produced an animal protein
  • 1941: George Beadle and Edward Tatum showed that genes encode a cell's enzymes
  • 1944: Oswald Avery, Colin MacLeod, and Maclyn McCarty showed that DNA is the hereditary material
  • 1953: James Watson and Francis Crick proposed a model of DNA structure
  • 1961: François Jacob and Jacques Monod discovered the role of mRNA in protein synthesis

Recycling Vital Elements

  • Microbial ecology is the study of the relationship between microorganisms and their environment
  • Bacteria convert carbon, oxygen, nitrogen, sulfur, and phosphorus into forms used by plants and animals

Using Microbes to Clean Up Pollutants

  • Bacteria degrade organic matter in sewage
  • Bacteria degrade or detoxify pollutants such as oil and mercury

Insect Pest Control by Microorganisms

  • Microbes that are pathogenic to insects are alternatives to chemical pesticides
    • These microbes prevent insect damage to agricultural crops and disease transmission
  • Bacillus thuringiensis infections are fatal in many insects but harmless to animals and plants

Modern Biotechnology and Recombinant DNA Technology

  • Biotechnology is the use of microbes for practical applications to produce foods and chemicals
  • Recombinant DNA technology enables bacteria and fungi to produce a variety of proteins, vaccines, and enzymes
  • Missing or defective genes in human cells can be replaced in gene therapy.
  • Genetically modified bacteria are used to protect crops from insects and from freezing

Normal Microbiota

  • Bacteria were once classified as plants, giving rise to the term flora for microbes -The term been replaced by microbiota
  • Microbes are normally present in on the human body and are called normal microbiota
  • Normal microbiota prevent growth of pathogens
  • Normal microbiota produce growth factors such as vitamins B and K
  • Resistance is the bodies ability to be able to ward off diseases
  • Resistance factors include skin, stomach acid, and antimicrobial chemicals

Biofilms

  • Microbes attach to solid surfaces and grow into masses
  • Microbes will grow on rocks, pipes, teeth, and medical implants
  • Biofilms can cause infections and are often resistant to antibiotics

Emerging Infectious Diseases

  • When a pathogen invades a host and overcomes the host's resistance, disease results, creating an Infectious diseases
  • Emerging infectious diseases or (EIDs) are new diseases and diseases increasing in incidence.
    • Emerging infectious diseases will evolve from existing organisms
    • The spread of known disease to a new area
    • Exposure to new, unusual infectious agents in an area undergoing ecological changes
  • Middle East respiratory syndrome (MERS)
    • Is caused by Middle East respiratory syndrome coronavirus (MERS-CoV)
    • Is common to Severe acute respiratory syndrome
    • Caused 100 deaths in the Middle East from 2012 to 2014
  • Avian influenza A (H5N1) that caused:
    • Influenza A virus
    • Primarily in waterfowl and poultry
    • Sustained human-to-human transmission of the virus has not occurred
  • Methicillin-resistant Staphylococcus aureus (MRSA)
    • Gained Penicillin resistance in the 1950s
    • Gained Methicillin resistance in the 1980s
    • In the 1990s, MRSA resistance to vancomycin was reported
    • This created VISA which is vancomycin-intermediate S. aureus and VRSA which is vancomycin-resistant S. aureus
  • West Nile Encephalitis (WNE)
    • Is caused by West Nile virus
    • Was first diagnosed in the West Nile region of Uganda in 1937
    • Appeared in New York City in and spread to Nonmigratory birds in 48 states
    • Is Transmitted between birds and to horses and humans by mosquitoes
  • Bovine spongiform encephalopathy (BSE)
    • Caused by a prion and an infectious protein that also causes Creutzfeldt-Jakob disease (CJD)
    • New variant of CJD in humans is related to cattle that have been given feed made from prion-infected sheep
  • E. coli 0157:H7
    • Is a Toxin-producing strain of E. coli
    • First seen in 1982 and causes bloody diarrhea
    • Is the leading cause of diarrhea worldwide
  • Ebola hemorrhagic fever (EHF)
    • Is comprised of Ebola virus
    • Causes causes fever, hemorrhaging, and blood clotting
    • Is transmitted via contact with infected blood or body fluids
    • Was First identified near Ebola River, Congo and caused the 2014 outbreak in Guinea with hundreds being killed
  • Cryptosporidiosis
    • Is comprised of Cryptosporidium protozoa
    • Was First reported in 1976 and causes 30% of diarrheal illness in developing countries
    • In the United States, it is transmitted via water
  • AIDS (acquired immunodeficiency syndrome)
    • Caused by human immunodeficiency virus (HIV)
    • First identified in 1981
    • Has a Sexually transmitted infection affecting both males and females and it causes a Worldwide epidemic that infects 35 million people with approximately 6000 new infections every day
    • HIV/AIDS in the United States is 26% female, and 49% are African American

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