Biological Chemistry Lecture 5: Proteins
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Questions and Answers

What is the key characteristic of fibrous proteins?

Fibrous proteins are elongated and insoluble, providing structural support.

How are globular proteins generally described in terms of solubility?

Globular proteins are generally soluble in water.

What role do transport or carrier proteins play?

Transport or carrier proteins transport ions or molecules in the body.

Which classification of proteins includes those that provide nutrition and store ions?

<p>Nutrient or storage proteins.</p> Signup and view all the answers

What are the two main categories of proteins based on composition?

<p>Simple proteins and conjugated proteins.</p> Signup and view all the answers

What distinguishes regulatory proteins from other types of proteins?

<p>Regulatory proteins regulate cellular or metabolic activities.</p> Signup and view all the answers

What type of proteins are involved in the contractile system?

<p>Contractile and mobile proteins.</p> Signup and view all the answers

Define the term 'amphoteric' in the context of amino acids.

<p>Amphoteric amino acids can act as both acids and bases.</p> Signup and view all the answers

Why are enzymes categorized as enzymatic proteins?

<p>Enzymes are classified as enzymatic proteins because they function as biological catalysts.</p> Signup and view all the answers

What is a prosthetic group in conjugated proteins?

<p>A prosthetic group is a non-protein component that binds to the protein part (apoprotein).</p> Signup and view all the answers

What characterizes nonpolar, aliphatic R groups in amino acids?

<p>They are nonpolar and hydrophobic.</p> Signup and view all the answers

How do aromatic R groups differ from polar uncharged R groups?

<p>Aromatic R groups are relatively nonpolar and hydrophobic, while polar uncharged R groups are hydrophilic.</p> Signup and view all the answers

Describe the charge of positively charged (basic) R groups at pH 7.0.

<p>They contain a net positive charge.</p> Signup and view all the answers

What is the general function of selenocysteine in proteins?

<p>Selenocysteine functions as a site for redox reactions due to its unique selenium composition.</p> Signup and view all the answers

How do amino acids act as acids and bases in solution?

<p>They can donate protons as acids or accept protons as bases.</p> Signup and view all the answers

What role does a zwitterion play in the behavior of amino acids in solution?

<p>A zwitterion can act as both a proton donor and a proton acceptor.</p> Signup and view all the answers

What differentiates negatively charged (acidic) R groups from polar uncharged R groups?

<p>Negatively charged R groups have a net negative charge, while polar uncharged groups do not.</p> Signup and view all the answers

List two uncommon amino acids and their specific functions.

<p>Citrulline is involved in the urea cycle; Desmosine is crucial for elastin structure.</p> Signup and view all the answers

What are derived proteins and give two examples?

<p>Derived proteins are proteins that have been modified or degraded from their original form. Examples include coagulated proteins and peptones.</p> Signup and view all the answers

How do albumins and globulins differ in terms of solubility?

<p>Albumins are water-soluble proteins that coagulate upon heating, while globulins are insoluble in pure water but soluble in dilute salt solutions.</p> Signup and view all the answers

Explain the significance of the α-carbon in amino acids.

<p>The α-carbon in amino acids is significant because it is a chiral center, which allows amino acids to exist as enantiomers. It is bonded to four different groups: a carboxyl group, an amino group, an R group, and a hydrogen atom.</p> Signup and view all the answers

List the three-letter abbreviations for three common amino acids.

<p>Examples include Ala for alanine, Gly for glycine, and Ser for serine.</p> Signup and view all the answers

What are the five main classes of amino acids based on their R groups?

<p>The five main classes are nonpolar aliphatic, aromatic, polar uncharged, positively charged, and negatively charged amino acids.</p> Signup and view all the answers

What was the first amino acid to be discovered and in what year?

<p>The first amino acid to be discovered was asparagine, in the year 1806.</p> Signup and view all the answers

Describe the process of identifying the carbons in an amino acid.

<p>Carbons in an amino acid are identified by designating the α carbon as the central carbon, and then additional carbons in the R group are designated as β, γ, δ, etc., or numbered from the highest priority substituent.</p> Signup and view all the answers

Why are amino acids, except glycine, optically active?

<p>All common amino acids except glycine are optically active because their α-carbon is attached to four different groups, allowing for two stereoisomers.</p> Signup and view all the answers

Study Notes

Biological Chemistry - Lecture 5: Proteins

  • Proteins are classified by structure, function, composition, and solubility.
  • Proteins are classified based on the following aspects:
    • Structure (fibrous, globular, membrane)
    • Function (enzymatic, structural, transport, nutrient/storage, contractile, defence, regulatory, toxic)
    • Composition (simple, conjugated, derived)
    • Solubility (albumins, globulins, prolamins, glutelins)

Protein Classification - Based on Structure

  • Fibrous proteins: Elongated, insoluble, provide structural support (e.g., collagen, keratin, elastin)
  • Globular proteins: Compact, generally soluble in water, complex shapes, perform diverse functions (e.g., enzymes, antibodies, hemoglobin)
  • Membrane proteins: Embedded in cell membranes, involved in transport, signaling, and communication (e.g., ion channels, receptors)

Protein Classification - Based on Function

  • Enzymatic proteins: Biological catalysts (e.g., urease, amylase, catalase, alcohol dehydrogenase)
  • Structural proteins: Strengthening or protecting biological structures (e.g., collagen, elastin, keratin, fibroin)
  • Transport or carrier proteins: Transport ions or molecules in the body (e.g., myoglobin, hemoglobin, lipoproteins)
  • Nutrient or storage proteins: Provide nutrition to growing embryos and store ions (e.g., ovalbumin, casein, ferritin)
  • Contractile and mobile proteins: Function in the contractile system (e.g., actin, myosin, tubulin)
  • Defense proteins: Defending against other organisms (e.g., antibodies, fibrinogen, thrombin)
  • Regulatory proteins: Regulate cellular or metabolic activities (e.g., insulin, G protein, growth hormone)
  • Toxic proteins: Hydrolyse enzymes (e.g., snake venom, ricin)

Protein Classification - Based on Composition

  • Simple proteins: Yield only amino acids during hydrolysis (e.g., albumins, globulins)
  • Conjugated proteins: Consist of a protein part (apoprotein) and a non-protein component (prosthetic group) (e.g., glycoproteins, lipoproteins, metalloproteins)
  • Derived proteins: Modified or degraded from their original form through chemical or physical processes (e.g., proteans, metaproteins, coagulated proteins, peptones)

Protein Classification - Based on Solubility

  • Albumins: Water-soluble; coagulate when heated (e.g., blood plasma)
  • Globulins: Insoluble in pure water, soluble in dilute salt solutions (e.g., blood, milk)
  • Prolamins: Soluble in alcohol (e.g., gliadin in wheat)
  • Glutelins: Soluble in acids or bases (e.g., wheat, rice)

Amino Acids

  • General Structure: Amino group (-NH2), carboxyl group (-COOH), hydrogen atom (-H), and a variable side chain (R group), all bonded to a central carbon atom (α-carbon).
  • Common Amino Acids: Twenty different amino acids commonly found in proteins.
  • α-amino acids: All 20 common amino acids are α-amino acids.
  • Chirality: Most amino acids exist as L-stereoisomers, in proteins.
  • Classification by R group:
    • Nonpolar, aliphatic
    • Aromatic
    • Polar, uncharged
    • Positively charged (basic)
    • Negatively charged (acidic)

Additional Amino Acids

  • Importance of Uncommon Amino Acids: (e.g. 4-hydroxyproline, 5-hydroxylysine, 6-N-Methyllysine, γ-carboxyglutamate, Desmosine, Selenocysteine, Ornithine, Citrulline)

Amino Acid Behavior in Solution

  • Zwitterions: In water, amino acids exist as dipolar ions called zwitterions.
  • Ampholytic nature: Zwitterions can act as both acids (proton donors) and bases (proton acceptors).
  • Diprotic nature: Amino acids are diprotic when fully protonated by having two groups (-COOH, -NH3+) that can yield protons.

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This quiz covers Lecture 5 from your Biological Chemistry course, focusing on the classification of proteins. Learn about the various types of proteins based on their structure, function, composition, and solubility. Test your knowledge of fibrous, globular, and membrane proteins along with their specific roles.

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