Podcast
Questions and Answers
How does increased bacterial presence affect the amount of light reaching the reflector in a turbidity test?
How does increased bacterial presence affect the amount of light reaching the reflector in a turbidity test?
Increased bacteria reduces the amount of light reaching the reflector.
Why is the turbidity test described as a 'quick and dirty' method for estimating bacterial populations?
Why is the turbidity test described as a 'quick and dirty' method for estimating bacterial populations?
It's a fast but less precise method, suitable for large populations where detailed counting isn't practical.
For what type of practical application would a turbidity test be most useful, and why is it better than other methods in this case?
For what type of practical application would a turbidity test be most useful, and why is it better than other methods in this case?
Assessing bacterial contamination in a river; it's faster and more practical than filtering and counting individual colonies.
List the three techniques mentioned for quantifying bacteria in a sample.
List the three techniques mentioned for quantifying bacteria in a sample.
Why is isolating colonies important when trying to understand how much bacteria is in a sample?
Why is isolating colonies important when trying to understand how much bacteria is in a sample?
Why is oxygen, while essential for some organisms, toxic to others?
Why is oxygen, while essential for some organisms, toxic to others?
Describe the function of catalase in the context of bacterial survival in an oxygen-rich environment.
Describe the function of catalase in the context of bacterial survival in an oxygen-rich environment.
Explain how superoxide dismutase contributes to bacterial defense against toxic oxygen species.
Explain how superoxide dismutase contributes to bacterial defense against toxic oxygen species.
Outline the steps of the catalase test and what a positive result indicates about a bacterium.
Outline the steps of the catalase test and what a positive result indicates about a bacterium.
Why is hydrogen peroxide not a perfect antiseptic?
Why is hydrogen peroxide not a perfect antiseptic?
Relate the presence or absence of catalase to a bacterium's ability to survive in aerobic conditions.
Relate the presence or absence of catalase to a bacterium's ability to survive in aerobic conditions.
Compare and contrast the roles of catalase and superoxide dismutase in neutralizing different reactive oxygen species.
Compare and contrast the roles of catalase and superoxide dismutase in neutralizing different reactive oxygen species.
If a bacterium tests negative for catalase, what can you infer about its ability to handle oxidative stress, and why?
If a bacterium tests negative for catalase, what can you infer about its ability to handle oxidative stress, and why?
How does the presence or absence of catalase and peroxidase enzymes relate to a bacterium's oxygen tolerance?
How does the presence or absence of catalase and peroxidase enzymes relate to a bacterium's oxygen tolerance?
Explain how a facultative anaerobe's growth pattern would differ in an environment with high oxygen concentration versus one with very low oxygen concentration.
Explain how a facultative anaerobe's growth pattern would differ in an environment with high oxygen concentration versus one with very low oxygen concentration.
Why are microaerophiles restricted to environments with a narrow range of oxygen concentrations?
Why are microaerophiles restricted to environments with a narrow range of oxygen concentrations?
Describe how the location of bacterial growth in a thioglycolate broth can indicate its oxygen requirement.
Describe how the location of bacterial growth in a thioglycolate broth can indicate its oxygen requirement.
What is a biofilm and where can they be found?
What is a biofilm and where can they be found?
What does it mean for bacteria to have synergistic relationships within a biofilm?
What does it mean for bacteria to have synergistic relationships within a biofilm?
How do aerotolerant anaerobes survive in the presence of oxygen, even though they don't use it for metabolism?
How do aerotolerant anaerobes survive in the presence of oxygen, even though they don't use it for metabolism?
Explain why biofilms are a concern in medical settings, especially concerning implanted medical devices.
Explain why biofilms are a concern in medical settings, especially concerning implanted medical devices.
Describe how the metabolic efficiency of a facultative anaerobe changes in the absence of oxygen and why.
Describe how the metabolic efficiency of a facultative anaerobe changes in the absence of oxygen and why.
Relate the properties of Helicobacter pylori to its classification as a microaerophile and its habitat in the human body.
Relate the properties of Helicobacter pylori to its classification as a microaerophile and its habitat in the human body.
Compare and contrast the enzyme profile and oxygen requirements of an obligate aerobe versus an obligate anaerobe.
Compare and contrast the enzyme profile and oxygen requirements of an obligate aerobe versus an obligate anaerobe.
How do biofilms contribute to increased antibiotic resistance in bacterial infections?
How do biofilms contribute to increased antibiotic resistance in bacterial infections?
Explain why simply 'eating dirt' might not be sufficient for developing a robust immune system, despite exposure to diverse microbes.
Explain why simply 'eating dirt' might not be sufficient for developing a robust immune system, despite exposure to diverse microbes.
What are the implications of biofilms forming on implanted medical devices, and what strategies can be used to prevent this?
What are the implications of biofilms forming on implanted medical devices, and what strategies can be used to prevent this?
Describe how oxygen gradients can influence the distribution and survival of different types of bacteria in a natural environment.
Describe how oxygen gradients can influence the distribution and survival of different types of bacteria in a natural environment.
Why is it difficult to obtain a pure culture, even when using sterile instruments during sample collection?
Why is it difficult to obtain a pure culture, even when using sterile instruments during sample collection?
Why are urine samples typically collected midstream?
Why are urine samples typically collected midstream?
What is added to blood sample test tubes and why?
What is added to blood sample test tubes and why?
Why is obtaining a pure culture essential in microbiological studies, and what does it ensure about the microbial population being studied?
Why is obtaining a pure culture essential in microbiological studies, and what does it ensure about the microbial population being studied?
Describe the fundamental principle behind the streak plate method for isolating bacterial colonies.
Describe the fundamental principle behind the streak plate method for isolating bacterial colonies.
From which area of the body is cerebrospinal fluid collected, and why is this procedure performed?
From which area of the body is cerebrospinal fluid collected, and why is this procedure performed?
A researcher observes a bacterial colony on blood agar that exhibits a greenish discoloration around the growth. What type of hemolysis is likely occurring, and what does this indicate about the bacteria's interaction with red blood cells?
A researcher observes a bacterial colony on blood agar that exhibits a greenish discoloration around the growth. What type of hemolysis is likely occurring, and what does this indicate about the bacteria's interaction with red blood cells?
In the TB case described, why did it take multiple hospital visits to diagnose the patient correctly?
In the TB case described, why did it take multiple hospital visits to diagnose the patient correctly?
How does differential media differ from selective media in microbiology, and what information can be obtained by using differential media that cannot be obtained using selective media?
How does differential media differ from selective media in microbiology, and what information can be obtained by using differential media that cannot be obtained using selective media?
Why is aseptic technique so important when trying to get pure cultures?
Why is aseptic technique so important when trying to get pure cultures?
Explain the concept of serial dilutions and their importance in quantifying bacterial populations, particularly when dealing with high concentrations.
Explain the concept of serial dilutions and their importance in quantifying bacterial populations, particularly when dealing with high concentrations.
Besides a CT scan, what specific diagnostic procedure ultimately led to the discovery of TB in the patient's lungs?
Besides a CT scan, what specific diagnostic procedure ultimately led to the discovery of TB in the patient's lungs?
In a carbohydrate utilization test using phenol red as a pH indicator, a microbiologist observes a yellow color change and a bubble in the Durham tube. What do these observations indicate about the bacteria's metabolic activity?
In a carbohydrate utilization test using phenol red as a pH indicator, a microbiologist observes a yellow color change and a bubble in the Durham tube. What do these observations indicate about the bacteria's metabolic activity?
Why is it necessary to use specialized techniques, such as stab cultures or anaerobic culture systems, when studying obligate anaerobes, and what environmental condition are these techniques designed to create?
Why is it necessary to use specialized techniques, such as stab cultures or anaerobic culture systems, when studying obligate anaerobes, and what environmental condition are these techniques designed to create?
Why might a sputum sample not always be sufficient for lung sampling, and what alternative method is used in such cases?
Why might a sputum sample not always be sufficient for lung sampling, and what alternative method is used in such cases?
In the context of serial dilutions, if you count 65 colonies on a plate that resulted from a $10^{-4}$ dilution, how would you calculate the number of bacteria per milliliter in the original culture?
In the context of serial dilutions, if you count 65 colonies on a plate that resulted from a $10^{-4}$ dilution, how would you calculate the number of bacteria per milliliter in the original culture?
Explain the purpose of the Durham tube in a carbohydrate utilization assay. How does it aid in the identification of bacterial metabolic properties?
Explain the purpose of the Durham tube in a carbohydrate utilization assay. How does it aid in the identification of bacterial metabolic properties?
For assessing stomach microbes, what invasive procedure might be necessary?
For assessing stomach microbes, what invasive procedure might be necessary?
How does membrane filtration allow for the quantification of bacteria, and under what circumstances is it preferred over serial dilutions?
How does membrane filtration allow for the quantification of bacteria, and under what circumstances is it preferred over serial dilutions?
Why is a catheter sometimes needed for urine collection, and when is it typically used?
Why is a catheter sometimes needed for urine collection, and when is it typically used?
Describe the purpose of using a spectrophotometer in estimating bacterial populations.
Describe the purpose of using a spectrophotometer in estimating bacterial populations.
Describe the conditions that methylene blue indicates in an anaerobic culture system. What does a change in the color of methylene blue signify within the system?
Describe the conditions that methylene blue indicates in an anaerobic culture system. What does a change in the color of methylene blue signify within the system?
Explain why the spectrophotometer method is considered a 'guesstimate'.
Explain why the spectrophotometer method is considered a 'guesstimate'.
When are biopsies generally required for disease tissues?
When are biopsies generally required for disease tissues?
If a bacterial species is cultured on blood agar and no change is observed in the medium around the colonies, what type of hemolysis is this, and what does it suggest about the bacteria's ability to lyse red blood cells?
If a bacterial species is cultured on blood agar and no change is observed in the medium around the colonies, what type of hemolysis is this, and what does it suggest about the bacteria's ability to lyse red blood cells?
Explain why multiple streaks are needed to isolate colonies.
Explain why multiple streaks are needed to isolate colonies.
Considering the challenges in obtaining pure cultures from various body sites, describe one common strategy used to minimize contamination during urine sampling and explain why this strategy is effective.
Considering the challenges in obtaining pure cultures from various body sites, describe one common strategy used to minimize contamination during urine sampling and explain why this strategy is effective.
In a clinical setting, why might a microbiologist choose to use blood agar as a primary isolation medium when trying to identify a bacterial pathogen from a patient sample?
In a clinical setting, why might a microbiologist choose to use blood agar as a primary isolation medium when trying to identify a bacterial pathogen from a patient sample?
Why is it important to dilute a sample before trying to count the number of colonies?
Why is it important to dilute a sample before trying to count the number of colonies?
Explain why diagnosing the patient with TB meningitis was challenging, referencing the diagnostic methods used and the initial findings.
Explain why diagnosing the patient with TB meningitis was challenging, referencing the diagnostic methods used and the initial findings.
Regarding the soy agar mentioned, explain why it might be useful for selecting organisms that metabolize amino acids. What essential nutrient is limited in this type of medium?
Regarding the soy agar mentioned, explain why it might be useful for selecting organisms that metabolize amino acids. What essential nutrient is limited in this type of medium?
Differentiate between the types of samples for which you would use serial dilution vs. membrane filtration.
Differentiate between the types of samples for which you would use serial dilution vs. membrane filtration.
How does the use of a palladium pellet in an anaerobic culture system contribute to creating the oxygen-free environment required for culturing obligate anaerobes?
How does the use of a palladium pellet in an anaerobic culture system contribute to creating the oxygen-free environment required for culturing obligate anaerobes?
Contrast the methods of obtaining samples from the lungs and stomach. Why are different approaches necessary for each?
Contrast the methods of obtaining samples from the lungs and stomach. Why are different approaches necessary for each?
Given the difficulties in ensuring a pure culture from a urine sample, under what circumstances would a clinician opt for the more invasive method of catheterization?
Given the difficulties in ensuring a pure culture from a urine sample, under what circumstances would a clinician opt for the more invasive method of catheterization?
Describe the potential impact of contamination during any of these counting methods and what steps are crucial to prevent it.
Describe the potential impact of contamination during any of these counting methods and what steps are crucial to prevent it.
Imagine a scenario where a lab technician forgets to add the palladium pellet to an anaerobic culture system. How would this error likely affect the growth of obligate anaerobes in the system?
Imagine a scenario where a lab technician forgets to add the palladium pellet to an anaerobic culture system. How would this error likely affect the growth of obligate anaerobes in the system?
A researcher is studying a new bacterial isolate and observes that it produces a large amount of gas during carbohydrate fermentation. How would this observation manifest in a carbohydrate utilization test using a Durham tube?
A researcher is studying a new bacterial isolate and observes that it produces a large amount of gas during carbohydrate fermentation. How would this observation manifest in a carbohydrate utilization test using a Durham tube?
Reflecting on the TB meningitis case, what does this case highlight about the challenges of diagnosing infections that affect the brain?
Reflecting on the TB meningitis case, what does this case highlight about the challenges of diagnosing infections that affect the brain?
Apart from direct counting and spectrophotometry, what other methods exist for estimating bacterial population size, and what are their underlying principles?
Apart from direct counting and spectrophotometry, what other methods exist for estimating bacterial population size, and what are their underlying principles?
How might the principle of differential media be applied in a clinical laboratory to distinguish between different strains of Staphylococcus, particularly Staphylococcus aureus and other less pathogenic species?
How might the principle of differential media be applied in a clinical laboratory to distinguish between different strains of Staphylococcus, particularly Staphylococcus aureus and other less pathogenic species?
When is the liquid broth used in the serial dilution method?
When is the liquid broth used in the serial dilution method?
Compare and contrast the growth patterns you would expect to see in a stab culture of obligate aerobes, facultative anaerobes and obligate anaerobes.
Compare and contrast the growth patterns you would expect to see in a stab culture of obligate aerobes, facultative anaerobes and obligate anaerobes.
What is inoculum?
What is inoculum?
A scientist is working with a bacterial species suspected to be an obligate anaerobe but is unsure of its exact oxygen sensitivity. Describe a simple experiment, using readily available lab equipment, to determine the bacterium's tolerance to oxygen.
A scientist is working with a bacterial species suspected to be an obligate anaerobe but is unsure of its exact oxygen sensitivity. Describe a simple experiment, using readily available lab equipment, to determine the bacterium's tolerance to oxygen.
Why is agar preferred over gelatin or potato wedges as a solidifying agent in microbiological media?
Why is agar preferred over gelatin or potato wedges as a solidifying agent in microbiological media?
Explain how the properties of agar (melting and solidifying temperatures) are advantageous for creating culture media.
Explain how the properties of agar (melting and solidifying temperatures) are advantageous for creating culture media.
Describe the key difference between synthetic and complex media, and note a specific advantage and disadvantage of each.
Describe the key difference between synthetic and complex media, and note a specific advantage and disadvantage of each.
What are fastidious organisms, and what type of media is commonly used to culture them? Explain why this media is suitable.
What are fastidious organisms, and what type of media is commonly used to culture them? Explain why this media is suitable.
Explain how selective media works to promote the growth of certain microorganisms while inhibiting others.
Explain how selective media works to promote the growth of certain microorganisms while inhibiting others.
Give an example of how a researcher might use selective media to isolate fungi from a mixed bacterial and fungal sample.
Give an example of how a researcher might use selective media to isolate fungi from a mixed bacterial and fungal sample.
How can a researcher determine if a bacterium is a halophile using microbiological media?
How can a researcher determine if a bacterium is a halophile using microbiological media?
Describe how removing glucose from a defined or complex medium can help researchers understand bacterial metabolism and growth.
Describe how removing glucose from a defined or complex medium can help researchers understand bacterial metabolism and growth.
What is the significance of Koch’s postulates in the context of culturing microorganisms?
What is the significance of Koch’s postulates in the context of culturing microorganisms?
Explain why catheters and IVs can be a 'breeding ground' for bacteria.
Explain why catheters and IVs can be a 'breeding ground' for bacteria.
Distinguish between the terms "inoculum," "medium," and "colony" in the context of microbial culture.
Distinguish between the terms "inoculum," "medium," and "colony" in the context of microbial culture.
Explain how you could use both selective and complex media in sequence to isolate and then grow a specific bacterium from a mixed environmental sample (e.g., soil).
Explain how you could use both selective and complex media in sequence to isolate and then grow a specific bacterium from a mixed environmental sample (e.g., soil).
A researcher is trying to culture a newly discovered bacterium from a remote hot spring. Considering the bacterium is likely adapted to extreme heat and unique minerals, what considerations should the researcher take when designing the culture medium?
A researcher is trying to culture a newly discovered bacterium from a remote hot spring. Considering the bacterium is likely adapted to extreme heat and unique minerals, what considerations should the researcher take when designing the culture medium?
A lab technician accidentally overheats agar while preparing growth media. How might this affect the media's ability to support bacterial growth, and what adjustments can be made to compensate?
A lab technician accidentally overheats agar while preparing growth media. How might this affect the media's ability to support bacterial growth, and what adjustments can be made to compensate?
Why is it important that most microbes cannot digest agar?
Why is it important that most microbes cannot digest agar?
Why is it important to eliminate oxygen when culturing anaerobic bacteria, and how can methylene blue be used as an indicator in this process?
Why is it important to eliminate oxygen when culturing anaerobic bacteria, and how can methylene blue be used as an indicator in this process?
Explain the difference between selective and differential media, and provide an example of a media that can be both.
Explain the difference between selective and differential media, and provide an example of a media that can be both.
Describe how McConkey agar functions as both a selective and differential medium, and include specific examples of how different bacteria react on this agar.
Describe how McConkey agar functions as both a selective and differential medium, and include specific examples of how different bacteria react on this agar.
List four characteristics of bacterial colonies that can be used to identify and categorize them.
List four characteristics of bacterial colonies that can be used to identify and categorize them.
If you observe a bacterial colony that is circular, smooth, flat, large (20mm), opaque, red, and shiny, how would you describe these characteristics in a lab report?
If you observe a bacterial colony that is circular, smooth, flat, large (20mm), opaque, red, and shiny, how would you describe these characteristics in a lab report?
Outline the general steps involved in clinical sampling for microbial cultures, providing two specific examples of sampling locations.
Outline the general steps involved in clinical sampling for microbial cultures, providing two specific examples of sampling locations.
Compare and contrast the growth of E. coli and Staph aureus on nutrient agar versus McConkey agar. Explain the reasons for any differences observed.
Compare and contrast the growth of E. coli and Staph aureus on nutrient agar versus McConkey agar. Explain the reasons for any differences observed.
Explain why size is considered a relative characteristic when describing bacterial colonies.
Explain why size is considered a relative characteristic when describing bacterial colonies.
How does the ability of a bacterium to ferment lactose affect its appearance on McConkey agar, and why is this differentiation important in clinical microbiology?
How does the ability of a bacterium to ferment lactose affect its appearance on McConkey agar, and why is this differentiation important in clinical microbiology?
Describe the role of selective media in isolating a specific type of bacteria from a mixed culture, and how this is applicable in a clinical setting.
Describe the role of selective media in isolating a specific type of bacteria from a mixed culture, and how this is applicable in a clinical setting.
Predict what would happen if you tried to culture a strict aerobe in a vessel containing methylene blue under anaerobic conditions. Explain your prediction.
Predict what would happen if you tried to culture a strict aerobe in a vessel containing methylene blue under anaerobic conditions. Explain your prediction.
Explain how the texture and appearance (shiny vs. dull) of a bacterial colony can provide clues about its physiological state or species.
Explain how the texture and appearance (shiny vs. dull) of a bacterial colony can provide clues about its physiological state or species.
Describe a scenario where using a combination of selective and differential media would be beneficial in identifying a bacterial pathogen from a clinical sample.
Describe a scenario where using a combination of selective and differential media would be beneficial in identifying a bacterial pathogen from a clinical sample.
Why is it important to consider the source of a clinical sample when interpreting the results of a microbial culture?
Why is it important to consider the source of a clinical sample when interpreting the results of a microbial culture?
How can the concept of 'elevation' in bacterial colony morphology assist in differentiating between bacterial species on an agar plate?
How can the concept of 'elevation' in bacterial colony morphology assist in differentiating between bacterial species on an agar plate?
Flashcards
Obligate Aerobes
Obligate Aerobes
Bacteria that require oxygen to survive.
Free Radicals
Free Radicals
Unstable molecules with unpaired electrons that can damage cells.
Catalase, Peroxidase, Superoxide Dismutase
Catalase, Peroxidase, Superoxide Dismutase
Enzymes that protect bacteria by converting toxic oxygen species into non-toxic substances.
Catalase
Catalase
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Superoxide Dismutase
Superoxide Dismutase
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Catalase Test
Catalase Test
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Bubbling in Catalase Test
Bubbling in Catalase Test
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Hydrogen Peroxide (H2O2)
Hydrogen Peroxide (H2O2)
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Catalase and Peroxidase
Catalase and Peroxidase
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Facultative Anaerobes
Facultative Anaerobes
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Aerotolerant Anaerobes
Aerotolerant Anaerobes
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Microaerophiles
Microaerophiles
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Liquid Ethy Glycolate Growth Medium
Liquid Ethy Glycolate Growth Medium
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Biofilms
Biofilms
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Dental Caries (Cavities)
Dental Caries (Cavities)
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Shower Curtains
Shower Curtains
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Implanted Medical Devices
Implanted Medical Devices
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Staph Aureus
Staph Aureus
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70%
70%
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Optimal growth in oxygen zone
Optimal growth in oxygen zone
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Inoculum
Inoculum
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Medium (plural: media)
Medium (plural: media)
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Broth
Broth
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Colonies
Colonies
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Agar
Agar
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Why is agar useful?
Why is agar useful?
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Synthetic Media
Synthetic Media
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Complex Media
Complex Media
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Blood Agar
Blood Agar
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Fastidious organisms
Fastidious organisms
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Selective Media
Selective Media
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Dextrose Agar
Dextrose Agar
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Dye and Bile Salts
Dye and Bile Salts
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Halophiles
Halophiles
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Removing Glucose
Removing Glucose
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Serial Dilutions
Serial Dilutions
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Membrane Filtration
Membrane Filtration
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Turbidity Test
Turbidity Test
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Quick Bacterial Count
Quick Bacterial Count
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Streaking Method
Streaking Method
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Proper Technique Importance
Proper Technique Importance
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Midstream Urine Sample
Midstream Urine Sample
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Anticoagulants
Anticoagulants
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Cerebrospinal Fluid Sampling
Cerebrospinal Fluid Sampling
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Sputum Sample
Sputum Sample
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Intubation for Stomach Sampling
Intubation for Stomach Sampling
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Aseptic Urine Collection
Aseptic Urine Collection
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Biopsy Significance
Biopsy Significance
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Pure Culture
Pure Culture
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H. Pylori
H. Pylori
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Blood needle aspiration
Blood needle aspiration
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Lumbar Punctures
Lumbar Punctures
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Sub arachnoid spaces
Sub arachnoid spaces
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symptomatic lung infection
symptomatic lung infection
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TB in the lung
TB in the lung
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Soy Agar
Soy Agar
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Differential Media
Differential Media
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Beta Hemolysis
Beta Hemolysis
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Alpha Hemolysis
Alpha Hemolysis
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Gamma Hemolysis
Gamma Hemolysis
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Carbohydrate Utilization Tube
Carbohydrate Utilization Tube
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Durham Tube
Durham Tube
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Stab Culture
Stab Culture
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Anaerobic Culture System
Anaerobic Culture System
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Phenol Red Dye Change
Phenol Red Dye Change
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Gas Production in Fermentation
Gas Production in Fermentation
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Complete Hemolysis
Complete Hemolysis
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Methylene Blue Indicator
Methylene Blue Indicator
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Selective and Differential Media
Selective and Differential Media
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McConkey Agar
McConkey Agar
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McConkey Agar: Selective Action
McConkey Agar: Selective Action
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McConkey Agar: Differential Action
McConkey Agar: Differential Action
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E. coli on McConkey Agar
E. coli on McConkey Agar
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Salmonella on McConkey Agar
Salmonella on McConkey Agar
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Colony Characteristics
Colony Characteristics
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Bacterial Colony Shapes
Bacterial Colony Shapes
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Bacterial Margin Types
Bacterial Margin Types
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Bacterial Elevation Types
Bacterial Elevation Types
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Clinical Sampling
Clinical Sampling
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Clinical Sample Sources
Clinical Sample Sources
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Strep Throat Bacteria
Strep Throat Bacteria
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Affect
Affect
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Aseptic Technique
Aseptic Technique
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Streak Plate
Streak Plate
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TNTC
TNTC
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Colony Calculation
Colony Calculation
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Indirect Method
Indirect Method
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Spectrophotometer
Spectrophotometer
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Turbidity
Turbidity
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Agar Plate
Agar Plate
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Transferring
Transferring
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Sterilized Equipment
Sterilized Equipment
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Study Notes
- Oxygen is essential for some living beings and bacteria called obligate Arabs use it as the final electron receptor in their electron transport chain.
- Oxygen is toxic for a lot of bacteria.
Oxygen Toxicity
- The reason oxygen is a good electron acceptor is the same reason it can be toxic, it easily creates free radicals.
- Free radicals like peroxide or the oxygen radical (O2 radical) can be toxic.
- Some bacteria have enzymes like catalase, peroxidase, or superoxide dismutase that can turn toxic oxygen into something nontoxic.
- Bacteria with these enzymes are able to grow in an environment with oxygen.
Catalase
- Catalase is an enzyme that turns peroxide into oxygen and water.
- Peroxidase can turn peroxide into water and NAD.
- Superoxide dismutase can turn the superoxide radical into oxygen peroxide and H2O, the peroxide then needs catalase or peroxidase to be detoxified further.
Catalase Test
- This test determines if a bacterium has catalase.
- Drop H2O2 on a slide with bacteria, bubbling indicates water and oxygen formation, meaning the bacteria has catalase.
- Staphylococcus epidermis is catalase positive, it has the enzyme, so when hydrogen peroxide is dropped on it, it bubbles.
- Hydrogen peroxide can be used to kill bacteria, but some bacteria can dismantle and break it down.
Bacteria Grouping by Oxygen Requirements
- Obligate Arabs have catalase and oxidase, they need oxygen.
- Obligate anaerobes like clostridium lack both catalase and peroxidase, so they are susceptible to the toxic action of hydrogen peroxide.
- Facultative anaerobes like E.coli are Arabs that maintain life via fermentation or anaerobic respiration, their metabolic efficiency is reduced without oxygen, but they can still survive.
- Error tolerant anaerobes like lactobacilli don't use aerobic metabolism but they can tolerate oxygen, they have low levels of enzymes.
- Micro aero files like pylori need oxygen levels within a certain range, 2 to 10%, and don't do well lower or higher.
Visualizing Oxygen Requirements
- A liquid ethyl glycol ate growth medium can create an oxygen gradient, with the most oxygen at the top and none at the bottom.
- Obligate Arabs thrive in the anoxic zone at the top because they need oxygen and have all the enzymes.
- Strict anaerobes are all at the bottom because they don't have the enzymes and avoid oxygen.
- Micro aero files thrive between 2 to 10% of oxygen, so they hang out in the middle.
- Facultative anaerobes do best when there's oxygen, so their optimal growth happens in the oxygen zone, but they can survive in other areas.
- Arab tolerant Arabs prefer not to have oxygen, but they have low level enzymes, so they are spread throughout the test tube.
Biofilms
- Biofilms are microbial communities with synergistic relationships that attach to surfaces.
- Examples include dental caries or cavities, slippery rocks, shower curtains.
- 70% of bacterial diseases in industrialized nations are caused by biofilms, often due to tooth decay and infections from implanted medical devices.
- Catheters and IVs are breeding grounds for bacteria, especially if in place for a long time.
Microbial Cultures
- Inoculum is the sample you're trying to grow.
- Medium is the collection of nutrients, can be hard like agar on a petri dish or liquid, called a broth.
- Colonies are cultures visible on solid media.
- Cox's postulates for demonstrating that a certain agent causes a specific disease requires the microorganism to be isolated and then cultured.
Agar
- The basis of all solid media is agar.
- Agar is a complex polysaccharide derived from the cell walls of red algae.
- Most microbes can't digest agar, powdered agar dissolves in water at 100°C, but it doesn't destroy the nutrients.
- It solidifies at a temperature below 40 degrees.
Types of Media
- Synthetic media has an exact chemical composition that is known.
- Complex media contain nutrients released from partially digested beef, yeast, soy, or proteins like casein from milk.
- Selective media contains a substance that favors the growth of one particular organism or inhibits the growth of unwanted ones.
- Differential media allows you to see how different bacteria use this media or this particular nutrient.
Selective Media
- Separate dextrose agar is more acidic than regular agar, and inhibits the growth of bacteria and is selective for fungi.
- Examples of selective media include use in methylene blue bile salts, which kill gram positives but are harmless to gram negatives, or adding salt to a medium.
Differential Media
- Allows you to see how different bacteria use the media or a particular nutrient, visible through changes in the medium or differences in the appearance of the.
- Classic blood agar with different types of bacteria shows how they use the red blood cells specifically.
- Beta hemolysis means all of the red blood cells were used up.
- Alpha hemolysis is a partial usage.
- Gamma hemolysis is no hemolysis because there's no uptake or no usage.
Carbohydrate Utilization Tube
- Carbohydrate utilization tubes have a single kind of simple carbohydrate, a red phenol dye as a pH indicator, and an inverted test tube inside.
- If there's fermentation with the carbohydrates from the bacteria, it changes color because fermentation usually creates more acidity and the red will turn into yellow.
- The bacteria will produce gas as a byproduct of the fermentation, creating a bubble at the top of the inverted Durham tube.
Obligate Anaerobes
- They require a special culture condition to protect themselves from free oxygen.
- A stab culture uses solid media in a test tube, that is completely oxygen free with a straight inoculating wire with the bacteria transferred from one anaerobic place and stuck into the test tube..
- The bacteria grows where the puncture in the medium is.
- An anaerobic culture system with Petri dishes uses a palladium pellet that catalyzes a reaction and removes oxygen from the air.
- When oxygen is completely gone from the space, the methylene blue will change color, it turns colorless in the absence of oxygen.
McConkey Agar
- Enhances the growth of certain species and can be distinguished from other species.
- It suppresses the growth of one and promotes the growth of another, you can see the differences in how the medium or nutrients are being used.
- In McConkey agar, E.coli thrives and staph aureus doesn't, but in a normal nutrient agar, both do fine.
- In McConkey agar, E coli utilizes lactose completely and salmonella does it partially, but can still grow.
Bacterial Colonies Characteristics
- Characteristics often have distinctive characteristics.
- Shape, margins around the outside, elevation (flat or race size), texture (smooth or rough), appearance (shiny or dull), pigmented (colorless or color), opaque or translucent etc
- Example: Mark seasons - Shape is circle with smooth margins. It is flat, large, has red pigmentation and is shiny and opaque.
Clinical Sampling
- Clinical sampling from a skin scrape, accessible membrane, or wound.
- Proper technique is important, it's difficult to get a pure culture.
- Urine samples should be midstream but are often contaminated with white blood cells.
- Blood sampling involves needle aspiration from a vein with an anti coagulant in the test tubes to prevent clotting.
- Cerebrospinal fluid is needle aspirated from sub arachnoid spaces in the spinal column of nerves and lumbar puncture.
- Lung sampling is done by getting a sputum sample.
- Stomach microbes require intubation via endoscopy to check for H. Pylori.
- Catheter is needed for a true aseptic collection of urine.
- Significantly diseased tissues will require biopsy.
Pure Cultures
- A pure culture is one where all the microbes come from a single progenitor cell or as an isolated colony, with no contamination.
- This requires a high degree of aseptic technique and sterilized equipment.
Isolating Colonies
- Use a streak plate, dilute the inoculum by streaking it across the surface of the agar plate until only one bacterial cell is deposited every few millimeters.
- Use a liquid broth, take one meal of the original culture and put it in nine mils of broth, then transfer point one mil onto the plate and watch it grow.
- Continue these cereal dilutions until you get to around 100 colonies and can start counting.
- Multiply the 65 colonies times ten, then multiply by 1000 = 650,000 bacteria per mil.
Membrane Filtration
- Better when you have a smaller population.
- Use a membrane that has a grid, filter a liquid sample through into a vacuum in the flask.
- Count them through the grid and multiply the number of colonies counted by the volume of sample that was filtered to find how many bacteria per meal you started off with.
Turbidity Test
- For super large populations, indirect method.
- Using a spectral spectra of spectrophotometer, the more bacteria there are, the less light that's going to get penetrated through because the liquid is going to be more turbid.
- Scattered light won't reach the reflector if there's more bacteria in there.
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Description
This lesson explores bacterial quantification methods like turbidity tests and colony isolation. It also covers bacterial responses to oxygen, including catalase and superoxide dismutase. The role of catalase in bacterial survival and the catalase test are also examined.