Bacterial Quantification & Oxygen Sensitivity
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Questions and Answers

How does increased bacterial presence affect the amount of light reaching the reflector in a turbidity test?

Increased bacteria reduces the amount of light reaching the reflector.

Why is the turbidity test described as a 'quick and dirty' method for estimating bacterial populations?

It's a fast but less precise method, suitable for large populations where detailed counting isn't practical.

For what type of practical application would a turbidity test be most useful, and why is it better than other methods in this case?

Assessing bacterial contamination in a river; it's faster and more practical than filtering and counting individual colonies.

List the three techniques mentioned for quantifying bacteria in a sample.

<p>Serial dilutions, membrane filtration, and the turbidity test.</p> Signup and view all the answers

Why is isolating colonies important when trying to understand how much bacteria is in a sample?

<p>Isolating colonies allows for quantifying the bacteria in a sample.</p> Signup and view all the answers

Why is oxygen, while essential for some organisms, toxic to others?

<p>Oxygen's effectiveness as an electron acceptor leads to the formation of toxic free radicals. Organisms lacking the means to neutralize these radicals experience toxicity.</p> Signup and view all the answers

Describe the function of catalase in the context of bacterial survival in an oxygen-rich environment.

<p>Catalase is an enzyme that breaks down hydrogen peroxide ($H_2O_2$) into water ($H_2O$) and oxygen ($O_2$), thus neutralizing the toxic effects of peroxide radicals within the bacteria.</p> Signup and view all the answers

Explain how superoxide dismutase contributes to bacterial defense against toxic oxygen species.

<p>Superoxide dismutase converts the superoxide radical ($O_2^{-.}$) into oxygen ($O_2$) and hydrogen peroxide ($H_2O_2$). The hydrogen peroxide produced is then further detoxified by catalase or peroxidase.</p> Signup and view all the answers

Outline the steps of the catalase test and what a positive result indicates about a bacterium.

<p>The catalase test involves adding hydrogen peroxide ($H_2O_2$) to a bacterial sample. A positive result, indicated by the formation of bubbles, signifies that the bacteria produce catalase.</p> Signup and view all the answers

Why is hydrogen peroxide not a perfect antiseptic?

<p>Some bacteria possess enzymes like catalase and peroxidase, which can break down hydrogen peroxide into less harmful substances, reducing its effectiveness as an antiseptic.</p> Signup and view all the answers

Relate the presence or absence of catalase to a bacterium's ability to survive in aerobic conditions.

<p>Bacteria with catalase are better equipped to survive in aerobic conditions because catalase helps them detoxify harmful peroxide radicals produced during aerobic metabolism.</p> Signup and view all the answers

Compare and contrast the roles of catalase and superoxide dismutase in neutralizing different reactive oxygen species.

<p>Superoxide dismutase converts superoxide radicals into hydrogen peroxide and oxygen, while catalase converts hydrogen peroxide into water and oxygen. They work sequentially to detoxify different reactive oxygen species.</p> Signup and view all the answers

If a bacterium tests negative for catalase, what can you infer about its ability to handle oxidative stress, and why?

<p>A catalase-negative bacterium has a reduced capacity to handle oxidative stress because it cannot efficiently break down hydrogen peroxide, leading to potential cellular damage from the accumulation of toxic peroxide radicals.</p> Signup and view all the answers

How does the presence or absence of catalase and peroxidase enzymes relate to a bacterium's oxygen tolerance?

<p>Obligate anaerobes lack both catalase and peroxidase, making them susceptible to the toxic effects of hydrogen peroxide. Aerobes have these enzymes to neutralize toxic oxygen byproducts.</p> Signup and view all the answers

Explain how a facultative anaerobe's growth pattern would differ in an environment with high oxygen concentration versus one with very low oxygen concentration.

<p>In high oxygen, facultative anaerobes will exhibit optimal growth, utilizing aerobic respiration. In low oxygen, they will grow slower using fermentation or anaerobic respiration to survive.</p> Signup and view all the answers

Why are microaerophiles restricted to environments with a narrow range of oxygen concentrations?

<p>Microaerophiles require oxygen for metabolism, but are harmed by high concentrations due to limited enzymes to combat toxic forms of oxygen.</p> Signup and view all the answers

Describe how the location of bacterial growth in a thioglycolate broth can indicate its oxygen requirement.

<p>Growth at the top indicates an obligate aerobe. Growth at the bottom indicates an obligate anaerobe. Growth throughout indicates a aerotolerant anaerobe. Growth concentrated in the middle indicates a microaerophile. Growth concentrated at the top, but present throughout indicates a facultative anaerobe.</p> Signup and view all the answers

What is a biofilm and where can they be found?

<p>Biofilms are communities of microorganisms attached to a surface. They can be found on surfaces such as teeth, rocks in streams, shower curtains, and implanted medical devices.</p> Signup and view all the answers

What does it mean for bacteria to have synergistic relationships within a biofilm?

<p>This means that the different types of bacteria in the biofilm benefit from each other's presence. This commonly involves metabolic cooperation where waste products of one microbe are food sources for another.</p> Signup and view all the answers

How do aerotolerant anaerobes survive in the presence of oxygen, even though they don't use it for metabolism?

<p>Aerotolerant anaerobes can survive in the presence of oxygen because they possess enzymes like superoxide dismutase that neutralize harmful reactive oxygen species.</p> Signup and view all the answers

Explain why biofilms are a concern in medical settings, especially concerning implanted medical devices.

<p>Biofilms on medical devices can cause infections that are difficult to treat due to increased antibiotic resistance and protection from the host's immune system.</p> Signup and view all the answers

Describe how the metabolic efficiency of a facultative anaerobe changes in the absence of oxygen and why.

<p>Their metabolic efficiency is often reduced in the absence of oxygen because they switch to less efficient processes like fermentation or anaerobic respiration.</p> Signup and view all the answers

Relate the properties of Helicobacter pylori to its classification as a microaerophile and its habitat in the human body.

<p><em>H. pylori</em>'s need for low oxygen levels (2-10%) as a microaerophile allows it to colonize the stomach lining, where oxygen levels are lower than in fully aerobic environments.</p> Signup and view all the answers

Compare and contrast the enzyme profile and oxygen requirements of an obligate aerobe versus an obligate anaerobe.

<p>Obligate aerobes possess catalase and oxidase and require oxygen for survival. Obligate anaerobes lack catalase and peroxidase and cannot survive in the presence of oxygen.</p> Signup and view all the answers

How do biofilms contribute to increased antibiotic resistance in bacterial infections?

<p>Biofilms limit antibiotic penetration and promote horizontal gene transfer of resistance genes among the bacterial population, making the bacteria much harder to kill with typical antibiotic treatments.</p> Signup and view all the answers

Explain why simply 'eating dirt' might not be sufficient for developing a robust immune system, despite exposure to diverse microbes.

<p>While exposure to microbes is important, merely 'eating dirt' exposes one to uncontrolled and potentially pathogenic organisms, unlike controlled vaccinations. Also, hygiene prevents overwhelming exposure to pathogens.</p> Signup and view all the answers

What are the implications of biofilms forming on implanted medical devices, and what strategies can be used to prevent this?

<p>Biofilms on medical devices can cause persistent infections. Prevention strategies include using antimicrobial coatings on devices and strict sterilization protocols, as well as prescribing prophylactic antibiotics.</p> Signup and view all the answers

Describe how oxygen gradients can influence the distribution and survival of different types of bacteria in a natural environment.

<p>Oxygen gradients create niches for different bacteria based on their oxygen requirements, such as aerobes at the surface and anaerobes in deeper, oxygen-depleted zones.</p> Signup and view all the answers

Why is it difficult to obtain a pure culture, even when using sterile instruments during sample collection?

<p>The rest of the body that the sterile instrument comes into contact with is not sterile, leading to potential contamination during the process.</p> Signup and view all the answers

Why are urine samples typically collected midstream?

<p>Midstream collection aims to minimize contamination from the urethra and surrounding areas, providing a more accurate sample of the bladder's contents.</p> Signup and view all the answers

What is added to blood sample test tubes and why?

<p>Anticoagulants are added to prevent blood from clotting, which can hinder the isolation of bacteria or other microorganisms during testing.</p> Signup and view all the answers

Why is obtaining a pure culture essential in microbiological studies, and what does it ensure about the microbial population being studied?

<p>A pure culture ensures that all microbes originate from a single progenitor cell or isolated colony, making them genetically identical. This is essential for accurate and reliable study results.</p> Signup and view all the answers

Describe the fundamental principle behind the streak plate method for isolating bacterial colonies.

<p>The streak plate method dilutes an inoculum across an agar plate surface, decreasing the density of cells until single bacterial cells are deposited far enough apart to grow into isolated colonies.</p> Signup and view all the answers

From which area of the body is cerebrospinal fluid collected, and why is this procedure performed?

<p>Cerebrospinal fluid is collected from the subarachnoid space in the spinal column via lumbar puncture to check for infections or other abnormalities in the brain and spinal cord.</p> Signup and view all the answers

A researcher observes a bacterial colony on blood agar that exhibits a greenish discoloration around the growth. What type of hemolysis is likely occurring, and what does this indicate about the bacteria's interaction with red blood cells?

<p>Alpha hemolysis is likely occurring, indicating partial lysis of red blood cells.</p> Signup and view all the answers

In the TB case described, why did it take multiple hospital visits to diagnose the patient correctly?

<p>The initial symptoms mimicked other conditions, and the first lumbar puncture did not reveal the TB infection, leading to delays in diagnosis until a CT scan revealed a nodule in the lung.</p> Signup and view all the answers

How does differential media differ from selective media in microbiology, and what information can be obtained by using differential media that cannot be obtained using selective media?

<p>Differential media allows visualization of metabolic differences between bacteria, while selective media inhibits or promotes the growth of certain bacteria. Differential media provides information on how different bacteria utilize specific nutrients or substrates.</p> Signup and view all the answers

Why is aseptic technique so important when trying to get pure cultures?

<p>Aseptic technique is important because it minimizes contamination of the sample from the microbes on our bodies.</p> Signup and view all the answers

Explain the concept of serial dilutions and their importance in quantifying bacterial populations, particularly when dealing with high concentrations.

<p>Serial dilutions involve repeatedly diluting a sample to reduce the bacterial concentration to a countable range. This allows for an estimation of the original population size by accounting for the dilution factors.</p> Signup and view all the answers

Besides a CT scan, what specific diagnostic procedure ultimately led to the discovery of TB in the patient's lungs?

<p>A biopsy of a nodule found in the patient's lung during a CT scan led to the discovery of TB.</p> Signup and view all the answers

In a carbohydrate utilization test using phenol red as a pH indicator, a microbiologist observes a yellow color change and a bubble in the Durham tube. What do these observations indicate about the bacteria's metabolic activity?

<p>It indicates that the bacteria fermented the carbohydrate, producing acid (yellow color) and gas (bubble in the Durham tube) as byproducts.</p> Signup and view all the answers

Why is it necessary to use specialized techniques, such as stab cultures or anaerobic culture systems, when studying obligate anaerobes, and what environmental condition are these techniques designed to create?

<p>Obligate anaerobes cannot survive in the presence of oxygen. These techniques create an oxygen-free environment.</p> Signup and view all the answers

Why might a sputum sample not always be sufficient for lung sampling, and what alternative method is used in such cases?

<p>If a patient is not coughing or producing sputum, a biopsy from the lung is required to obtain a sample for testing.</p> Signup and view all the answers

In the context of serial dilutions, if you count 65 colonies on a plate that resulted from a $10^{-4}$ dilution, how would you calculate the number of bacteria per milliliter in the original culture?

<p>To calculate the number of bacteria per milliliter, multiply the number of colonies (65) by the inverse of the dilution factor ($10^4$). So, $65 \times 10^4 = 650,000$ bacteria per milliliter.</p> Signup and view all the answers

Explain the purpose of the Durham tube in a carbohydrate utilization assay. How does it aid in the identification of bacterial metabolic properties?

<p>The Durham tube detects gas production during fermentation. It indicates the bacteria's ability to produce gas as a byproduct of carbohydrate metabolism.</p> Signup and view all the answers

For assessing stomach microbes, what invasive procedure might be necessary?

<p>Intubation, such as endoscopy, is necessary to directly sample stomach microbes like H. pylori.</p> Signup and view all the answers

How does membrane filtration allow for the quantification of bacteria, and under what circumstances is it preferred over serial dilutions?

<p>Membrane filtration involves passing a liquid sample through a filter with a defined pore size to trap bacteria on the membrane surface, after which the filter is placed on growth medium and the colonies are counted.</p> Signup and view all the answers

Why is a catheter sometimes needed for urine collection, and when is it typically used?

<p>A catheter is needed for a truly aseptic collection of urine, typically used as a last resort when a normal urinalysis is insufficient due to potential contamination.</p> Signup and view all the answers

Describe the purpose of using a spectrophotometer in estimating bacterial populations.

<p>A spectrophotometer measures the turbidity of a liquid culture, which correlates with bacterial density. More bacteria result in higher turbidity and less light penetration.</p> Signup and view all the answers

Describe the conditions that methylene blue indicates in an anaerobic culture system. What does a change in the color of methylene blue signify within the system?

<p>Methylene blue indicates the presence of oxygen. A color change signifies that the oxygen has been removed from the system.</p> Signup and view all the answers

Explain why the spectrophotometer method is considered a 'guesstimate'.

<p>The spectrophotometer method is considered a 'guesstimate' because it relies on the correlation between turbidity and bacterial density, which can be affected by factors other than cell number, such as cell size and shape.</p> Signup and view all the answers

When are biopsies generally required for disease tissues?

<p>Biopsies are required for significantly diseased tissues to obtain a direct sample for accurate diagnosis and analysis.</p> Signup and view all the answers

If a bacterial species is cultured on blood agar and no change is observed in the medium around the colonies, what type of hemolysis is this, and what does it suggest about the bacteria's ability to lyse red blood cells?

<p>This is gamma hemolysis, indicating no lysis of red blood cells.</p> Signup and view all the answers

Explain why multiple streaks are needed to isolate colonies.

<p>The first streak contains too many cells to isolate. Subsequent streaks dilute the microbes enough to isolate single colonies.</p> Signup and view all the answers

Considering the challenges in obtaining pure cultures from various body sites, describe one common strategy used to minimize contamination during urine sampling and explain why this strategy is effective.

<p>Midstream urine collection is a common strategy. It is effective because it reduces contamination from the urethra and surrounding genital area by flushing out initial contaminants before the sample is collected.</p> Signup and view all the answers

In a clinical setting, why might a microbiologist choose to use blood agar as a primary isolation medium when trying to identify a bacterial pathogen from a patient sample?

<p>Blood agar is a differential medium that can help differentiate between bacteria based on their hemolytic properties. This can aid in the preliminary identification of potential pathogens.</p> Signup and view all the answers

Why is it important to dilute a sample before trying to count the number of colonies?

<p>Dilution reduces the concentration of bacteria to a level where individual colonies can be distinguished and counted, typically around 100 colonies per plate.</p> Signup and view all the answers

Explain why diagnosing the patient with TB meningitis was challenging, referencing the diagnostic methods used and the initial findings.

<p>Diagnosing tuberculous meningitis was challenging because initial symptoms mimicked a stroke, and the first lumbar puncture didn't reveal the TB. The diagnosis was made only after a CT scan revealed a lung nodule, which led to a biopsy and confirmation of TB.</p> Signup and view all the answers

Regarding the soy agar mentioned, explain why it might be useful for selecting organisms that metabolize amino acids. What essential nutrient is limited in this type of medium?

<p>Soy agar lacking glucose selects for organisms that can break down amino acids for energy. Glucose is the limited nutrient.</p> Signup and view all the answers

Differentiate between the types of samples for which you would use serial dilution vs. membrane filtration.

<p>Serial dilutions are better for quantifying samples with large starting populations; membrane filtration is better for small populations.</p> Signup and view all the answers

How does the use of a palladium pellet in an anaerobic culture system contribute to creating the oxygen-free environment required for culturing obligate anaerobes?

<p>The palladium pellet catalyzes a reaction that removes oxygen from the air within the system.</p> Signup and view all the answers

Contrast the methods of obtaining samples from the lungs and stomach. Why are different approaches necessary for each?

<p>Lung samples can sometimes be obtained via sputum, but a lung biopsy is needed if the patient isn't coughing. For stomach microbes, intubation is necessary. These different approaches are needed because lungs can expel fluids, while the stomach requires direct access due to its internal location.</p> Signup and view all the answers

Given the difficulties in ensuring a pure culture from a urine sample, under what circumstances would a clinician opt for the more invasive method of catheterization?

<p>A clinician would opt for catheterization when a truly aseptic urine sample is necessary and a standard urinalysis is insufficient due to likely contamination, typically as a last resort.</p> Signup and view all the answers

Describe the potential impact of contamination during any of these counting methods and what steps are crucial to prevent it.

<p>Contamination can introduce extraneous microbes, leading to inaccurate counts and misrepresentation of the original sample's composition. Strict aseptic techniques, sterilized equipment, and controlled environments are crucial to minimize contamination.</p> Signup and view all the answers

Imagine a scenario where a lab technician forgets to add the palladium pellet to an anaerobic culture system. How would this error likely affect the growth of obligate anaerobes in the system?

<p>The obligate anaerobes likely would not grow because the system would not be oxygen-free.</p> Signup and view all the answers

A researcher is studying a new bacterial isolate and observes that it produces a large amount of gas during carbohydrate fermentation. How would this observation manifest in a carbohydrate utilization test using a Durham tube?

<p>A large bubble would be observed at the top of the inverted Durham tube.</p> Signup and view all the answers

Reflecting on the TB meningitis case, what does this case highlight about the challenges of diagnosing infections that affect the brain?

<p>This case highlights that diagnosing brain infections can be challenging due to vague symptoms, potential for misdiagnosis, and the need for multiple diagnostic procedures to identify the causative agent.</p> Signup and view all the answers

Apart from direct counting and spectrophotometry, what other methods exist for estimating bacterial population size, and what are their underlying principles?

<p>Other methods include quantitative PCR (qPCR) which measures the amount of specific DNA sequences, and flow cytometry which counts cells based on their light scattering and fluorescence properties.</p> Signup and view all the answers

How might the principle of differential media be applied in a clinical laboratory to distinguish between different strains of Staphylococcus, particularly Staphylococcus aureus and other less pathogenic species?

<p>Differential media like mannitol salt agar can distinguish <em>Staphylococcus</em> species based on mannitol fermentation and colony color.</p> Signup and view all the answers

When is the liquid broth used in the serial dilution method?

<p>Liquid broth, a liquid medium with nutrients, is used to dilute the original culture and facilitate even distribution of bacterial cells during serial dilutions.</p> Signup and view all the answers

Compare and contrast the growth patterns you would expect to see in a stab culture of obligate aerobes, facultative anaerobes and obligate anaerobes.

<p>Obligate aerobes will only grow near the surface, obligate anaerobes will only grow away from the surface, and facultative anaerobes can grow throughout.</p> Signup and view all the answers

What is inoculum?

<p>The inoculum is the initial sample obtained for cultures.</p> Signup and view all the answers

A scientist is working with a bacterial species suspected to be an obligate anaerobe but is unsure of its exact oxygen sensitivity. Describe a simple experiment, using readily available lab equipment, to determine the bacterium's tolerance to oxygen.

<p>Inoculate the bacteria in an agar deep tube and observe the growth pattern relative to the surface. Growth only at the bottom would indicate obligate anaerobe.</p> Signup and view all the answers

Why is agar preferred over gelatin or potato wedges as a solidifying agent in microbiological media?

<p>Agar is not digestible by most microbes, has a high melting point, and doesn't destroy nutrients when it dissolves.</p> Signup and view all the answers

Explain how the properties of agar (melting and solidifying temperatures) are advantageous for creating culture media.

<p>Agar dissolves at high temperatures (100°C) without damaging nutrients, allowing heat-sensitive nutrients to be added as it cools before it solidifies below 40°C.</p> Signup and view all the answers

Describe the key difference between synthetic and complex media, and note a specific advantage and disadvantage of each.

<p>Synthetic media have a precisely known chemical composition, which is advantageous for controlled experiments. However, they are difficult and expensive to prepare. Complex media contain nutrients from digested sources with unknown exact compositions, which is easier to prepare but less precise.</p> Signup and view all the answers

What are fastidious organisms, and what type of media is commonly used to culture them? Explain why this media is suitable.

<p>Fastidious organisms require a large number of growth factors and specific nutrients. Blood agar is commonly used because it provides nutrient supplements that these organisms need to thrive.</p> Signup and view all the answers

Explain how selective media works to promote the growth of certain microorganisms while inhibiting others.

<p>Selective media contains substances that either favor the growth of a particular organism or inhibit the growth of unwanted ones, such as adjusting the pH or adding specific chemicals.</p> Signup and view all the answers

Give an example of how a researcher might use selective media to isolate fungi from a mixed bacterial and fungal sample.

<p>A researcher might use dextrose agar, which is more acidic than regular agar; the slightly more acidic environment inhibits bacterial growth while allowing fungi to thrive.</p> Signup and view all the answers

How can a researcher determine if a bacterium is a halophile using microbiological media?

<p>A researcher can add salt to the medium and observe whether the bacteria grow better in the presence of higher salt concentrations, indicating they are halophiles.</p> Signup and view all the answers

Describe how removing glucose from a defined or complex medium can help researchers understand bacterial metabolism and growth.

<p>Removing glucose forces the bacteria to use alternative metabolic pathways for growth, allowing researchers to observe how the bacteria metabolize other available nutrients.</p> Signup and view all the answers

What is the significance of Koch’s postulates in the context of culturing microorganisms?

<p>Koch’s postulates require the isolation and culturing of a microorganism to demonstrate that a specific agent causes a specific disease.</p> Signup and view all the answers

Explain why catheters and IVs can be a 'breeding ground' for bacteria.

<p>Catheters and IVs, especially when left in place for extended periods, provide a surface for bacteria to adhere to and colonize, leading to potential infections.</p> Signup and view all the answers

Distinguish between the terms "inoculum," "medium," and "colony" in the context of microbial culture.

<p>&quot;Inoculum&quot; refers to the sample being introduced into a culture. &quot;Medium&quot; is the nutrient-rich substance that supports microbial growth. &quot;Colony&quot; is the visible population of microorganisms growing on a solid medium.</p> Signup and view all the answers

Explain how you could use both selective and complex media in sequence to isolate and then grow a specific bacterium from a mixed environmental sample (e.g., soil).

<p>First, use selective media to inhibit unwanted organisms and enrich for the target bacterium. Then, transfer the enriched sample to complex media to provide ample nutrients for robust growth and further study of the isolated bacterium.</p> Signup and view all the answers

A researcher is trying to culture a newly discovered bacterium from a remote hot spring. Considering the bacterium is likely adapted to extreme heat and unique minerals, what considerations should the researcher take when designing the culture medium?

<p>The researcher should consider the bacterium's need for high temperatures, the specific mineral composition of the hot spring, and potentially test a variety of complex media to find one that supports growth.</p> Signup and view all the answers

A lab technician accidentally overheats agar while preparing growth media. How might this affect the media's ability to support bacterial growth, and what adjustments can be made to compensate?

<p>Overheating could damage or destroy some nutrients. To compensate, additional nutrients might be added after the agar has cooled to a safe temperature to ensure sufficient growth factors are available.</p> Signup and view all the answers

Why is it important that most microbes cannot digest agar?

<p>If microbes could digest agar, the solid medium would be consumed, the culture would disappear, and the agar would no longer be able to act as a stable growing environment.</p> Signup and view all the answers

Why is it important to eliminate oxygen when culturing anaerobic bacteria, and how can methylene blue be used as an indicator in this process?

<p>Anaerobic bacteria cannot survive in the presence of oxygen. Methylene blue turns colorless when oxygen is absent, indicating a successful environment for anaerobic culture.</p> Signup and view all the answers

Explain the difference between selective and differential media, and provide an example of a media that can be both.

<p>Selective media inhibits the growth of some microorganisms while promoting the growth of others, whereas differential media allows multiple types of microorganisms to grow but display different characteristics. McConkey agar inhibits the growth of some bacteria and differentiates others based on lactose fermentation.</p> Signup and view all the answers

Describe how McConkey agar functions as both a selective and differential medium, and include specific examples of how different bacteria react on this agar.

<p>McConkey agar is selective because it inhibits the growth of Gram-positive bacteria, while it differentiates Gram-negative bacteria based on their ability to ferment lactose. <em>E. coli</em> completely utilizes lactose, whereas <em>Salmonella</em> only partially utilizes it.</p> Signup and view all the answers

List four characteristics of bacterial colonies that can be used to identify and categorize them.

<p>Shape, margin, elevation, texture, pigmentation, and opacity/transparency.</p> Signup and view all the answers

If you observe a bacterial colony that is circular, smooth, flat, large (20mm), opaque, red, and shiny, how would you describe these characteristics in a lab report?

<p>The colony presents as circular, smooth margins, a flat elevation, and a large size (20mm). It is also opaque, exhibits red pigmentation, and has a shiny appearance.</p> Signup and view all the answers

Outline the general steps involved in clinical sampling for microbial cultures, providing two specific examples of sampling locations.

<p>Clinical sampling involves collecting specimens from areas such as skin scrapes, accessible membranes, or wounds. Examples include throat swabs for strep throat and urine samples for UTI testing.</p> Signup and view all the answers

Compare and contrast the growth of E. coli and Staph aureus on nutrient agar versus McConkey agar. Explain the reasons for any differences observed.

<p><em>E. coli</em> and <em>Staph aureus</em> both thrive on nutrient agar. However, on McConkey agar, <em>E. coli</em> thrives but <em>Staph aureus</em> does not grow because McConkey agar selects against Gram-positive bacteria like <em>Staph aureus</em>.</p> Signup and view all the answers

Explain why size is considered a relative characteristic when describing bacterial colonies.

<p>The size of a bacterial colony is relative because it must be compared to a known standard or measurement to be accurately described. Without context, terms like 'small' or 'large' are subjective.</p> Signup and view all the answers

How does the ability of a bacterium to ferment lactose affect its appearance on McConkey agar, and why is this differentiation important in clinical microbiology?

<p>Bacteria that ferment lactose will produce acid, causing a color change (usually pink or red) on McConkey agar, while non-fermenters will not change the color. This differentiation helps identify potential pathogens in clinical samples.</p> Signup and view all the answers

Describe the role of selective media in isolating a specific type of bacteria from a mixed culture, and how this is applicable in a clinical setting.

<p>Selective media inhibits the growth of unwanted bacteria while allowing the desired bacteria to grow, thus isolating it. In a clinical setting, this helps identify a specific pathogen from a sample containing multiple types of bacteria.</p> Signup and view all the answers

Predict what would happen if you tried to culture a strict aerobe in a vessel containing methylene blue under anaerobic conditions. Explain your prediction.

<p>The strict aerobe would not grow because it requires oxygen, which is absent in anaerobic conditions. The methylene blue would turn colorless, indicating the lack of oxygen.</p> Signup and view all the answers

Explain how the texture and appearance (shiny vs. dull) of a bacterial colony can provide clues about its physiological state or species.

<p>Texture and appearance can indicate the presence of capsules (shiny) or metabolic products. Differences can also be species-specific, aiding in identification.</p> Signup and view all the answers

Describe a scenario where using a combination of selective and differential media would be beneficial in identifying a bacterial pathogen from a clinical sample.

<p>In a urine sample suspected of UTI, McConkey agar can inhibit Gram-positive bacteria (selective) and differentiate Gram-negative bacteria based on lactose fermentation, helping to identify <em>E. coli</em> as a potential cause.</p> Signup and view all the answers

Why is it important to consider the source of a clinical sample when interpreting the results of a microbial culture?

<p>Different body sites have different normal flora. Knowing the sample source helps determine if the bacteria found are normal flora or potential pathogens.</p> Signup and view all the answers

How can the concept of 'elevation' in bacterial colony morphology assist in differentiating between bacterial species on an agar plate?

<p>Elevation, referring to how the colony rises above the agar surface (e.g., flat, raised, convex), can be a distinguishing feature, as different species exhibit characteristic elevation patterns.</p> Signup and view all the answers

Flashcards

Obligate Aerobes

Bacteria that require oxygen to survive.

Free Radicals

Unstable molecules with unpaired electrons that can damage cells.

Catalase, Peroxidase, Superoxide Dismutase

Enzymes that protect bacteria by converting toxic oxygen species into non-toxic substances.

Catalase

An enzyme that converts hydrogen peroxide into water and oxygen.

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Superoxide Dismutase

An enzyme that converts superoxide radicals into hydrogen peroxide and oxygen.

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Catalase Test

A test to determine if a bacteria produces catalase.

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Bubbling in Catalase Test

The observable result of a positive catalase test; indicates the presence of catalase enzyme.

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Hydrogen Peroxide (H2O2)

A chemical that can be used to kill bacteria, but some bacteria can break it down.

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Catalase and Peroxidase

Enzymes that obligate anaerobes lack, making them susceptible to hydrogen peroxide.

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Facultative Anaerobes

Bacteria that can survive with or without oxygen, but prefer oxygen.

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Aerotolerant Anaerobes

Bacteria that don't use aerobic metabolism but can tolerate oxygen.

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Microaerophiles

Bacteria that require oxygen levels within a specific range (2-10%).

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Liquid Ethy Glycolate Growth Medium

Device used to create an oxygen gradient in a test tube to observe bacterial growth patterns based on oxygen requirements.

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Biofilms

Microbial communities attached to surfaces, displaying synergistic relationships.

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Dental Caries (Cavities)

A dental issue caused by biofilms.

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Shower Curtains

A common place one might find a biofilm.

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Implanted Medical Devices

A concerning location for biofilms to form.

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Staph Aureus

A common bacteria found in biofilms on catheters.

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70%

The approximate percentage of bacterial diseases in industrialized nations caused by biofilms.

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Optimal growth in oxygen zone

They do best when there's oxygen, but they could do without it too.

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Inoculum

Sample used to start a microbial culture.

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Medium (plural: media)

Nutrient-rich environment for growing microorganisms.

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Broth

Liquid medium used for cultivating microorganisms

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Colonies

Visible clusters of microorganisms on solid media.

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Agar

Complex polysaccharide from red algae, used to solidify growth media

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Why is agar useful?

Microbes can't digest it, stable at high temps, solidifies below 40°C.

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Synthetic Media

Growth media with a precisely defined chemical composition.

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Complex Media

Growth media with nutrients from digested organic sources (beef, yeast, etc.)

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Blood Agar

Media with added blood to enhance growth of fastidious organisms.

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Fastidious organisms

Organisms with very specific nutritional requirements.

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Selective Media

Media that favor the growth of certain microorganisms or inhibit others.

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Dextrose Agar

Inhibits bacteria, selects for fungi

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Dye and Bile Salts

Inhibits Gram-positive bacteria, allowing Gram-negative bacteria to grow.

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Halophiles

Organisms that thrive in high-salt environments.

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Removing Glucose

Studying how bacteria metabolize without it.

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Serial Dilutions

Diluting a sample to reduce bacterial concentration for easier counting.

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Membrane Filtration

Filtering a sample through a membrane to trap bacteria, then counting colonies.

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Turbidity Test

Estimating bacterial concentration by measuring the cloudiness of a liquid sample.

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Quick Bacterial Count

A quick method to estimate bacteria using light and a formula.

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Streaking Method

A method to isolate individual colonies of bacteria.

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Proper Technique Importance

Ensuring procedures don't introduce contaminants during sample collection.

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Midstream Urine Sample

Collecting urine mid-stream to reduce contamination from initial flow.

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Anticoagulants

Substances added to blood samples to prevent clot formation.

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Cerebrospinal Fluid Sampling

Needle aspiration from the subarachnoid space to collect fluid.

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Sputum Sample

Sampling lung secretions produced by coughing.

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Intubation for Stomach Sampling

Inserting a tube for stomach microbe collection ,e.g., for H. pylori testing.

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Aseptic Urine Collection

Using a catheter to obtain a sterile urine sample directly from the bladder.

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Biopsy Significance

Removing tissue samples for examination, particularly in diseased areas.

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Pure Culture

A culture containing only one type of bacteria. That can be used to identify the original bacteria.

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H. Pylori

Common bacteria found in the stomach that can be detected via endoscopy.

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Blood needle aspiration

Requires a needle to extract from the vein.

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Lumbar Punctures

Used to check for brain infections.

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Sub arachnoid spaces

The fluid surrounding the brain and the spinal cord.

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symptomatic lung infection

People who have an infection in their lungs that are symptomatic.

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TB in the lung

Requires biopsy on the nodule.

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Soy Agar

A type of media that selects for organisms that can metabolize amino acids for energy by excluding glucose.

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Differential Media

Media that allows differentiation of bacteria based on how they utilize specific nutrients or cause visible changes.

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Beta Hemolysis

Complete breakdown of red blood cells, resulting in a clear zone around bacterial colonies.

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Alpha Hemolysis

Partial breakdown of red blood cells, resulting in a greenish discoloration around bacterial colonies.

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Gamma Hemolysis

No breakdown of red blood cells, resulting in no change in the medium's appearance.

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Carbohydrate Utilization Tube

A tube containing a specific carbohydrate, a pH indicator, and an inverted Durham tube to detect fermentation and gas production.

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Durham Tube

A small, inverted test tube placed inside a larger test tube to detect gas production during fermentation.

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Stab Culture

A method for culturing obligate anaerobes in a solid medium within a test tube, minimizing oxygen exposure.

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Anaerobic Culture System

A culture system used to create an oxygen-free environment for culturing anaerobic bacteria in Petri dishes.

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Phenol Red Dye Change

Acid production during fermentation

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Gas Production in Fermentation

Gas produced as a byproduct of bacterial fermentation

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Complete Hemolysis

Complete usage of red blood cells

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Methylene Blue Indicator

A dye that loses its color in the absence of oxygen, indicating anaerobic conditions.

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Selective and Differential Media

Agar that both selects for certain bacteria and differentiates between them.

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McConkey Agar

A common agar used in labs to differentiate bacteria, often used to identify UTIs.

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McConkey Agar: Selective Action

McConkey agar suppresses some bacteria while allowing others to thrive.

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McConkey Agar: Differential Action

McConkey agar differentiates bacteria by their ability to ferment lactose.

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E. coli on McConkey Agar

Bacteria that fully ferments the lactose in McConkey agar.

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Salmonella on McConkey Agar

Bacteria that partially ferments lactose on McConkey agar allowing it to still thrive.

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Colony Characteristics

Shape, margin, elevation, texture, appearance, pigmentation, and opacity.

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Bacterial Colony Shapes

Circular, filamentous, irregular, rhizoid, spindle.

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Bacterial Margin Types

Smooth, entire, lobate, undulate, serrate, filamentous.

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Bacterial Elevation Types

Flat, raised, convex, pulvinate, umbonate.

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Clinical Sampling

Analyzing samples from the body for microbial presence.

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Clinical Sample Sources

Skin scrapes, accessible membranes, and wounds.

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Strep Throat Bacteria

Streptococcus pyogenes.

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Affect

The look or affect someone has on their face.

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Aseptic Technique

Techniques used to prevent contamination during microbial culture handling.

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Streak Plate

A method to isolate colonies by diluting a sample across an agar plate.

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TNTC

Too Numerous To Count; used when colonies on a plate are too dense to count.

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Colony Calculation

A method for counting bacteria by diluting a sample to a countable range and calculating the original concentration.

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Indirect Method

Estimating bacterial population size by measuring the turbidity of the liquid.

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Spectrophotometer

An instrument used to measure the turbidity of a liquid culture.

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Turbidity

The cloudiness or haziness of a liquid, indicating the presence of particles.

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Agar Plate

A solid medium used to culture microorganisms.

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Transferring

Transferring a small amount of a substance for testing or inoculation.

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Sterilized Equipment

Sterilized tools and work environments are essential to prevent contamination.

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Study Notes

  • Oxygen is essential for some living beings and bacteria called obligate Arabs use it as the final electron receptor in their electron transport chain.
  • Oxygen is toxic for a lot of bacteria.

Oxygen Toxicity

  • The reason oxygen is a good electron acceptor is the same reason it can be toxic, it easily creates free radicals.
  • Free radicals like peroxide or the oxygen radical (O2 radical) can be toxic.
  • Some bacteria have enzymes like catalase, peroxidase, or superoxide dismutase that can turn toxic oxygen into something nontoxic.
  • Bacteria with these enzymes are able to grow in an environment with oxygen.

Catalase

  • Catalase is an enzyme that turns peroxide into oxygen and water.
  • Peroxidase can turn peroxide into water and NAD.
  • Superoxide dismutase can turn the superoxide radical into oxygen peroxide and H2O, the peroxide then needs catalase or peroxidase to be detoxified further.

Catalase Test

  • This test determines if a bacterium has catalase.
  • Drop H2O2 on a slide with bacteria, bubbling indicates water and oxygen formation, meaning the bacteria has catalase.
  • Staphylococcus epidermis is catalase positive, it has the enzyme, so when hydrogen peroxide is dropped on it, it bubbles.
  • Hydrogen peroxide can be used to kill bacteria, but some bacteria can dismantle and break it down.

Bacteria Grouping by Oxygen Requirements

  • Obligate Arabs have catalase and oxidase, they need oxygen.
  • Obligate anaerobes like clostridium lack both catalase and peroxidase, so they are susceptible to the toxic action of hydrogen peroxide.
  • Facultative anaerobes like E.coli are Arabs that maintain life via fermentation or anaerobic respiration, their metabolic efficiency is reduced without oxygen, but they can still survive.
  • Error tolerant anaerobes like lactobacilli don't use aerobic metabolism but they can tolerate oxygen, they have low levels of enzymes.
  • Micro aero files like pylori need oxygen levels within a certain range, 2 to 10%, and don't do well lower or higher.

Visualizing Oxygen Requirements

  • A liquid ethyl glycol ate growth medium can create an oxygen gradient, with the most oxygen at the top and none at the bottom.
  • Obligate Arabs thrive in the anoxic zone at the top because they need oxygen and have all the enzymes.
  • Strict anaerobes are all at the bottom because they don't have the enzymes and avoid oxygen.
  • Micro aero files thrive between 2 to 10% of oxygen, so they hang out in the middle.
  • Facultative anaerobes do best when there's oxygen, so their optimal growth happens in the oxygen zone, but they can survive in other areas.
  • Arab tolerant Arabs prefer not to have oxygen, but they have low level enzymes, so they are spread throughout the test tube.

Biofilms

  • Biofilms are microbial communities with synergistic relationships that attach to surfaces.
  • Examples include dental caries or cavities, slippery rocks, shower curtains.
  • 70% of bacterial diseases in industrialized nations are caused by biofilms, often due to tooth decay and infections from implanted medical devices.
  • Catheters and IVs are breeding grounds for bacteria, especially if in place for a long time.

Microbial Cultures

  • Inoculum is the sample you're trying to grow.
  • Medium is the collection of nutrients, can be hard like agar on a petri dish or liquid, called a broth.
  • Colonies are cultures visible on solid media.
  • Cox's postulates for demonstrating that a certain agent causes a specific disease requires the microorganism to be isolated and then cultured.

Agar

  • The basis of all solid media is agar.
  • Agar is a complex polysaccharide derived from the cell walls of red algae.
  • Most microbes can't digest agar, powdered agar dissolves in water at 100°C, but it doesn't destroy the nutrients.
  • It solidifies at a temperature below 40 degrees.

Types of Media

  • Synthetic media has an exact chemical composition that is known.
  • Complex media contain nutrients released from partially digested beef, yeast, soy, or proteins like casein from milk.
  • Selective media contains a substance that favors the growth of one particular organism or inhibits the growth of unwanted ones.
  • Differential media allows you to see how different bacteria use this media or this particular nutrient.

Selective Media

  • Separate dextrose agar is more acidic than regular agar, and inhibits the growth of bacteria and is selective for fungi.
  • Examples of selective media include use in methylene blue bile salts, which kill gram positives but are harmless to gram negatives, or adding salt to a medium.

Differential Media

  • Allows you to see how different bacteria use the media or a particular nutrient, visible through changes in the medium or differences in the appearance of the.
  • Classic blood agar with different types of bacteria shows how they use the red blood cells specifically.
  • Beta hemolysis means all of the red blood cells were used up.
  • Alpha hemolysis is a partial usage.
  • Gamma hemolysis is no hemolysis because there's no uptake or no usage.

Carbohydrate Utilization Tube

  • Carbohydrate utilization tubes have a single kind of simple carbohydrate, a red phenol dye as a pH indicator, and an inverted test tube inside.
  • If there's fermentation with the carbohydrates from the bacteria, it changes color because fermentation usually creates more acidity and the red will turn into yellow.
  • The bacteria will produce gas as a byproduct of the fermentation, creating a bubble at the top of the inverted Durham tube.

Obligate Anaerobes

  • They require a special culture condition to protect themselves from free oxygen.
  • A stab culture uses solid media in a test tube, that is completely oxygen free with a straight inoculating wire with the bacteria transferred from one anaerobic place and stuck into the test tube..
  • The bacteria grows where the puncture in the medium is.
  • An anaerobic culture system with Petri dishes uses a palladium pellet that catalyzes a reaction and removes oxygen from the air.
  • When oxygen is completely gone from the space, the methylene blue will change color, it turns colorless in the absence of oxygen.

McConkey Agar

  • Enhances the growth of certain species and can be distinguished from other species.
  • It suppresses the growth of one and promotes the growth of another, you can see the differences in how the medium or nutrients are being used.
  • In McConkey agar, E.coli thrives and staph aureus doesn't, but in a normal nutrient agar, both do fine.
  • In McConkey agar, E coli utilizes lactose completely and salmonella does it partially, but can still grow.

Bacterial Colonies Characteristics

  • Characteristics often have distinctive characteristics.
  • Shape, margins around the outside, elevation (flat or race size), texture (smooth or rough), appearance (shiny or dull), pigmented (colorless or color), opaque or translucent etc
  • Example: Mark seasons - Shape is circle with smooth margins. It is flat, large, has red pigmentation and is shiny and opaque.

Clinical Sampling

  • Clinical sampling from a skin scrape, accessible membrane, or wound.
  • Proper technique is important, it's difficult to get a pure culture.
  • Urine samples should be midstream but are often contaminated with white blood cells.
  • Blood sampling involves needle aspiration from a vein with an anti coagulant in the test tubes to prevent clotting.
  • Cerebrospinal fluid is needle aspirated from sub arachnoid spaces in the spinal column of nerves and lumbar puncture.
  • Lung sampling is done by getting a sputum sample.
  • Stomach microbes require intubation via endoscopy to check for H. Pylori.
  • Catheter is needed for a true aseptic collection of urine.
  • Significantly diseased tissues will require biopsy.

Pure Cultures

  • A pure culture is one where all the microbes come from a single progenitor cell or as an isolated colony, with no contamination.
  • This requires a high degree of aseptic technique and sterilized equipment.

Isolating Colonies

  • Use a streak plate, dilute the inoculum by streaking it across the surface of the agar plate until only one bacterial cell is deposited every few millimeters.
  • Use a liquid broth, take one meal of the original culture and put it in nine mils of broth, then transfer point one mil onto the plate and watch it grow.
  • Continue these cereal dilutions until you get to around 100 colonies and can start counting.
  • Multiply the 65 colonies times ten, then multiply by 1000 = 650,000 bacteria per mil.

Membrane Filtration

  • Better when you have a smaller population.
  • Use a membrane that has a grid, filter a liquid sample through into a vacuum in the flask.
  • Count them through the grid and multiply the number of colonies counted by the volume of sample that was filtered to find how many bacteria per meal you started off with.

Turbidity Test

  • For super large populations, indirect method.
  • Using a spectral spectra of spectrophotometer, the more bacteria there are, the less light that's going to get penetrated through because the liquid is going to be more turbid.
  • Scattered light won't reach the reflector if there's more bacteria in there.

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Description

This lesson explores bacterial quantification methods like turbidity tests and colony isolation. It also covers bacterial responses to oxygen, including catalase and superoxide dismutase. The role of catalase in bacterial survival and the catalase test are also examined.

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