Amino Acids and Proteins QUIZ-Exam-1
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Questions and Answers

Which one of the following is true about proteinogenic amino acids?

  • They are intermediates in biosynthetic pathways
  • They are nonproteinogenic amino acids
  • They are incorporated into proteins during translation (correct)
  • They form peptide bonds
  • What is the function of proteins?

  • Catalyzing reactions
  • Transport
  • DNA replication
  • All of the above (correct)
  • Which level of protein structure refers to the overall 3D structure of a single polypeptide chain?

  • Primary structure
  • Quaternary structure
  • Tertiary structure (correct)
  • Secondary structure
  • What are the two bond angles that biochemists look at within an amino acid chain?

    <p>φ and ψ angles</p> Signup and view all the answers

    Which type of amide bond is overwhelmingly preferred in proteins?

    <p>Trans amide bonds</p> Signup and view all the answers

    What are the two ends of a peptide/protein chain called?

    <p>N-terminus and C-terminus</p> Signup and view all the answers

    Which secondary structure is stabilized by intermolecular hydrogen bonds?

    <p>Alpha helix</p> Signup and view all the answers

    Which direction is more energetically favorable for alpha helices to turn?

    <p>Right-handed (clockwise)</p> Signup and view all the answers

    Which amino acid is less common in alpha helices due to its ring structure and lack of N-H bond?

    <p>Proline</p> Signup and view all the answers

    What is the function of alpha helices in proteins?

    <p>Membrane spanning motifs</p> Signup and view all the answers

    Which secondary structure is made up of linear strands of adjacent peptides?

    <p>Beta sheet</p> Signup and view all the answers

    How can the adjacent strands of peptides in a beta sheet run?

    <p>In opposite directions (antiparallel)</p> Signup and view all the answers

    Which of the following is true about proteinogenic amino acids?

    <p>They are incorporated into proteins during translation</p> Signup and view all the answers

    Which of the following is NOT a group in which proteinogenic amino acids are typically divided based on their side chains?

    <p>Hydrophobic and hydrophilic</p> Signup and view all the answers

    Which of the following is a hydrophobic/non-polar amino acid?

    <p>Valine</p> Signup and view all the answers

    Which of the following is an acidic amino acid?

    <p>Aspartic acid</p> Signup and view all the answers

    Which of the following is true about the ionization of amino acids?

    <p>Amino acids exist as zwitterions at physiological pH</p> Signup and view all the answers

    Which of the following is true about the ionization of acidic amino acids?

    <p>Aspartic acid side chain is &gt;99% ionized at physiological pH</p> Signup and view all the answers

    Which type of amino acids can be used to synthesize proteins?

    <p>L-amino acids</p> Signup and view all the answers

    Why are amino acids considered chiral?

    <p>Because the α carbon has four different substituents</p> Signup and view all the answers

    What system is typically used to describe the chirality of amino acids?

    <p>R/S system</p> Signup and view all the answers

    How are proteins synthesized using amino acids?

    <p>By condensation reactions</p> Signup and view all the answers

    Which type of bond is responsible for stabilizing tertiary structures of proteins?

    <p>Covalent bonds</p> Signup and view all the answers

    Which of the following is NOT a post-translational modification of proteins?

    <p>Acetylation</p> Signup and view all the answers

    What is the role of RNA polymerase II in protein synthesis?

    <p>Transcribing DNA into precursor mRNA</p> Signup and view all the answers

    What is the most common post-translational modification of proteins?

    <p>Phosphorylation</p> Signup and view all the answers

    What is the 3D structure of multiple polypeptide chains assembled together to form a protein called?

    <p>Quaternary structure</p> Signup and view all the answers

    What are the two types of subunits in antibodies?

    <p>Heavy and light chains</p> Signup and view all the answers

    What is the process called when DNA is used as a template to synthesize mRNA?

    <p>Transcription</p> Signup and view all the answers

    What are the enzymes responsible for attaching phosphate groups to proteins/small molecules called?

    <p>Kinases</p> Signup and view all the answers

    Which amino acid is phosphorylated by kinases?

    <p>All of the above</p> Signup and view all the answers

    Which amino acid can undergo O-linkage glycosylation?

    <p>Serine</p> Signup and view all the answers

    What system is typically used to describe the chirality of amino acids?

    <p>D/L system</p> Signup and view all the answers

    Which amino acid is achiral?

    <p>Glycine</p> Signup and view all the answers

    Which type of bond is responsible for stabilizing secondary structures of proteins?

    <p>Hydrogen bond</p> Signup and view all the answers

    What are the two ends of a peptide/protein chain called?

    <p>N-terminus and C-terminus</p> Signup and view all the answers

    Which type of amino acid can undergo O-linkage glycosylation?

    <p>Serine</p> Signup and view all the answers

    Which of the following is a non-proteinogenic amino acid?

    <p>Tryptophan</p> Signup and view all the answers

    Which of the following groups are proteinogenic amino acids typically divided into based on their side chains?

    <p>Polar vs non-polar</p> Signup and view all the answers

    Which of the following is a hydrophobic/non-polar amino acid?

    <p>Valine</p> Signup and view all the answers

    At physiological pH, what is the charge of zwitterions?

    <p>Neutral</p> Signup and view all the answers

    What is the pKa range for carboxylic acid groups in amino acids?

    <p>1.5-2.5</p> Signup and view all the answers

    What is the pKa range for amino groups in amino acids?

    <p>9.5-10.5</p> Signup and view all the answers

    Which of the following is true about the Ramachandran plot?

    <p>It shows the different bond angles observed within proteins.</p> Signup and view all the answers

    What is the function of alpha helices in proteins?

    <p>They can be DNA-binding motifs.</p> Signup and view all the answers

    Which of the following is true about beta sheets?

    <p>They are made up of linear strands of adjacent peptides.</p> Signup and view all the answers

    What is the primary difference between parallel and antiparallel beta sheets?

    <p>The direction in which the adjacent strands of peptides run.</p> Signup and view all the answers

    What is the function of protein domains?

    <p>They are able to form a particular function within a protein.</p> Signup and view all the answers

    What is the tertiary structure of a protein?

    <p>The 3D shape of a protein.</p> Signup and view all the answers

    Which of the following is true about the primary structure of proteins?

    <p>It is determined by the sequence of amino acids in the protein.</p> Signup and view all the answers

    Which of the following is true about the secondary structure of proteins?

    <p>It consists of various structural motifs within proteins.</p> Signup and view all the answers

    Which of the following is true about the tertiary structure of proteins?

    <p>It refers to the overall 3D structure of a single polypeptide chain.</p> Signup and view all the answers

    Which of the following is true about the quaternary structure of proteins?

    <p>It is the arrangement of multiple polypeptide chains in a protein.</p> Signup and view all the answers

    Which of the following bond angles do biochemists look at within an amino acid chain?

    <p>φ and ψ angles</p> Signup and view all the answers

    Which type of bond is responsible for stabilizing tertiary structures of proteins?

    <p>Hydrogen bond</p> Signup and view all the answers

    Which of the following is true about quaternary protein structure?

    <p>Quaternary structure refers to the 3D structure of multiple polypeptide chains assembled together to form a protein.</p> Signup and view all the answers

    Which of the following is responsible for synthesizing precursor mRNA?

    <p>RNA polymerase II</p> Signup and view all the answers

    Which of the following is NOT a post-translational modification of proteins?

    <p>Phosphorylation</p> Signup and view all the answers

    Which amino acid is most commonly phosphorylated by kinases?

    <p>Tyrosine</p> Signup and view all the answers

    What is the addition of sugar molecules to a protein called?

    <p>Glycosylation</p> Signup and view all the answers

    Which of the following is true about antibodies?

    <p>Antibodies consist of two heavy chains and two light chains.</p> Signup and view all the answers

    Which of the following is NOT a characteristic of proteinogenic amino acids?

    <p>Can be intermediates in biosynthetic pathways</p> Signup and view all the answers

    Which group of proteinogenic amino acids is based on their side chain polarity?

    <p>Polar and non-polar</p> Signup and view all the answers

    Which amino acid side chain has a pKa value of 6.04 and is 4% ionized at physiological pH?

    <p>Histidine</p> Signup and view all the answers

    Which type of bond is responsible for stabilizing tertiary structures of proteins?

    <p>Hydrogen bond</p> Signup and view all the answers

    Which amino acid is most commonly phosphorylated by kinases?

    <p>Tyrosine</p> Signup and view all the answers

    What is the primary difference between parallel and antiparallel beta sheets?

    <p>Direction of hydrogen bonding</p> Signup and view all the answers

    Which of the following secondary structures is more extended and less tightly coiled compared to alpha helices?

    <p>Beta sheet</p> Signup and view all the answers

    What is the most common membrane-spanning motif for proteins?

    <p>Alpha helix</p> Signup and view all the answers

    Which of the following is NOT a common structural motif observed in proteins?

    <p>Random coil</p> Signup and view all the answers

    Which of the following bond angles do biochemists look at within an amino acid chain?

    <p>Phi and psi angles</p> Signup and view all the answers

    Which of the following is true about protein domains?

    <p>Protein domains are regions of a protein that are able to form a particular function</p> Signup and view all the answers

    What is the function of alpha helices?

    <p>Alpha helices can be DNA-binding motifs</p> Signup and view all the answers

    Which of the following is true about the structure of amino acids?

    <p>Amino acids contain four constituents: amino group, carboxylic acid, hydrogen atom, and side chain</p> Signup and view all the answers

    Which of the following is true about the chirality of amino acids?

    <p>All proteins use exclusively L-amino acids</p> Signup and view all the answers

    How are amino acids typically grouped?

    <p>Based on their side chains</p> Signup and view all the answers

    What is the function of protein domains?

    <p>To bind to specific molecules</p> Signup and view all the answers

    What is the primary difference between parallel and antiparallel beta sheets?

    <p>The direction of the adjacent strands</p> Signup and view all the answers

    What system is typically used to describe the chirality of amino acids?

    <p>R/S system</p> Signup and view all the answers

    Which of the following is true about peptide bonds?

    <p>Peptide bonds have less flexibility than would be expected for a normal single bond.</p> Signup and view all the answers

    What is the primary structure of a protein?

    <p>The amino acid sequence of a protein.</p> Signup and view all the answers

    Which of the following is true about the cis and trans isomers of amide bonds?

    <p>Trans amide bonds are overwhelmingly preferred in proteins.</p> Signup and view all the answers

    What is the charge of zwitterions at physiological pH?

    <p>Neutral</p> Signup and view all the answers

    What is the function of alpha helices in proteins?

    <p>Structural support</p> Signup and view all the answers

    What are the two bond angles that biochemists look at within an amino acid chain?

    <p>φ and ψ</p> Signup and view all the answers

    Which of the following is true about post-translational modifications of proteins?

    <p>Phosphorylation is the most common post-translational modification</p> Signup and view all the answers

    Which of the following is true about glycosylation of proteins?

    <p>Glycosylation is the addition of sugar molecules to a substrate</p> Signup and view all the answers

    Which of the following is true about the quaternary structure of proteins?

    <p>Quaternary structures are stabilized by disulfide bonds</p> Signup and view all the answers

    Which of the following is true about proteinogenic amino acids?

    <p>Proteinogenic amino acids can be identified by their 1-letter abbreviation</p> Signup and view all the answers

    Which of the following is true about the secondary structure of proteins?

    <p>Alpha helices and beta sheets are examples of secondary structures</p> Signup and view all the answers

    Which of the following is NOT one of the three amino acids commonly phosphorylated by kinases?

    <p>Asparagine</p> Signup and view all the answers

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