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Questions and Answers
Which of the following applies to the structure of the isoleucine side chain?
Which of the following applies to the structure of the isoleucine side chain?
Which of the following amino acids has the basic properties?
Which of the following amino acids has the basic properties?
Stereoisomers exist for all amino acids, except: Glycine
Stereoisomers exist for all amino acids, except: Glycine
True
The primary structure of the protein is the ______ in a protein.
The primary structure of the protein is the ______ in a protein.
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What type of bond is formed between the non-protein and protein part in the phosphoprotein molecule?
What type of bond is formed between the non-protein and protein part in the phosphoprotein molecule?
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Match the amino acid with its prevalence in the structure of collagen:
Match the amino acid with its prevalence in the structure of collagen:
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What is the isoelectric point?
What is the isoelectric point?
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Choose the reaction of pentose phosphate pathway that is accompanied by dehydrogenation and decarboxylation:
Choose the reaction of pentose phosphate pathway that is accompanied by dehydrogenation and decarboxylation:
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Choose the reactions of glycolysis that are accompanied by isomerization:
Choose the reactions of glycolysis that are accompanied by isomerization:
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Choose the correct sequence of the enzymes of pyruvate dehydrogenase complex:
Choose the correct sequence of the enzymes of pyruvate dehydrogenase complex:
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Choose the correct sequence of the coenzymes of multienzyme complex performing oxidative decarboxylation of pyruvate:
Choose the correct sequence of the coenzymes of multienzyme complex performing oxidative decarboxylation of pyruvate:
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Choose the correct sequence of citrate cycle stages:
Choose the correct sequence of citrate cycle stages:
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Choose the correct sequence of dehydrogenase reactions in Krebs cycle:
Choose the correct sequence of dehydrogenase reactions in Krebs cycle:
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Choose the possible causes of hyperenzymemia:
Choose the possible causes of hyperenzymemia:
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Hypoenzymemia may be due to:
Hypoenzymemia may be due to:
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Choose the correct answers about parietal digestion of carbohydrates:
Choose the correct answers about parietal digestion of carbohydrates:
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During anaerobic glycolysis ATP is synthesized by the mechanism of substrate-level phosphorylation.
During anaerobic glycolysis ATP is synthesized by the mechanism of substrate-level phosphorylation.
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Synthesis of glucose from other organic non-carbohydrate compounds is called ________.
Synthesis of glucose from other organic non-carbohydrate compounds is called ________.
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What is the biological role of the non-oxidative phase of the pentose phosphate pathway?
What is the biological role of the non-oxidative phase of the pentose phosphate pathway?
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Choose the factors necessary for the elongation of translation:
Choose the factors necessary for the elongation of translation:
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Choose the factors necessary for the termination of translation:
Choose the factors necessary for the termination of translation:
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Choose processes that require GTP energy during translation:
Choose processes that require GTP energy during translation:
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MRNA is involved in the processes of:
MRNA is involved in the processes of:
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TRNA is involved in the processes of:
TRNA is involved in the processes of:
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Choose main metabolic effect of insulin:
Choose main metabolic effect of insulin:
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Which hormone binds to nuclear receptors?
Which hormone binds to nuclear receptors?
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Identify the correct sequence of events in the cascade mechanism of hormonal signal transduction:
Identify the correct sequence of events in the cascade mechanism of hormonal signal transduction:
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Waxes are composed of:
Waxes are composed of:
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Simple lipids include:
Simple lipids include:
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Palmitic acid is a:
Palmitic acid is a:
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Cholesterol belongs to which classification of lipids?
Cholesterol belongs to which classification of lipids?
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What are common structural components for mono-, di- and triacylglycerols?
What are common structural components for mono-, di- and triacylglycerols?
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Which of the following are amphipathic lipids?
Which of the following are amphipathic lipids?
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What region of phospholipid molecules is hydrophobic?
What region of phospholipid molecules is hydrophobic?
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Why are triacylglycerols completely insoluble in water?
Why are triacylglycerols completely insoluble in water?
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The diagnosis confirmation was provided by the finding of high blood level of:
The diagnosis confirmation was provided by the finding of high blood level of:
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All these effects are characteristic of insulin, except:
All these effects are characteristic of insulin, except:
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All statements regarding insulin are true, except:
All statements regarding insulin are true, except:
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Insulin is necessary for transport of glucose to the following pair of tissues:
Insulin is necessary for transport of glucose to the following pair of tissues:
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Binding of insulin to its receptor results in stimulation of enzyme activity, except for:
Binding of insulin to its receptor results in stimulation of enzyme activity, except for:
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Diabetes is characterized by all of the following metabolic changes, except:
Diabetes is characterized by all of the following metabolic changes, except:
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Glucocorticoids have a catabolic effect on:
Glucocorticoids have a catabolic effect on:
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All the following compounds are produced in the liver, except:
All the following compounds are produced in the liver, except:
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One of the main functions of the liver is to maintain blood glucose level. Even with the complete exclusion of carbohydrates from the diet, glucose blood level is maintained mainly due to:
One of the main functions of the liver is to maintain blood glucose level. Even with the complete exclusion of carbohydrates from the diet, glucose blood level is maintained mainly due to:
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Unconjugated bilirubin in blood is transferred bound to albumin because:
Unconjugated bilirubin in blood is transferred bound to albumin because:
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Feces normally contain:
Feces normally contain:
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Obstructive jaundice is accompanied by increasing blood level of:
Obstructive jaundice is accompanied by increasing blood level of:
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Hemolytic jaundice is accompanied by:
Hemolytic jaundice is accompanied by:
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Decreased antitoxic function of the liver is accompanied by the following changes in the blood:
Decreased antitoxic function of the liver is accompanied by the following changes in the blood:
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This reaction is used in the processes of: a) oxidative deamination b) indirect deamination of amino acids c) citric acid cycle d) ornithine cycle
This reaction is used in the processes of: a) oxidative deamination b) indirect deamination of amino acids c) citric acid cycle d) ornithine cycle
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Choose the enzymes involved in the oxidative deamination of amino acids in the human body: a) oxidases of D-amino acids b) glutamate dehydrogenase c) α-ketoglutarate dehydrogenase d) glutamine synthetase
Choose the enzymes involved in the oxidative deamination of amino acids in the human body: a) oxidases of D-amino acids b) glutamate dehydrogenase c) α-ketoglutarate dehydrogenase d) glutamine synthetase
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Choose ketogenic amino acids: a) Gly b) Lys c) Leu d) Ala
Choose ketogenic amino acids: a) Gly b) Lys c) Leu d) Ala
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Choose possible ways to use nitrogen-free products of the transamination and deamination reactions: a) the synthesis of new amino acids b) use as an energy source c) conversion to glucose d) conversion to nucleotides
Choose possible ways to use nitrogen-free products of the transamination and deamination reactions: a) the synthesis of new amino acids b) use as an energy source c) conversion to glucose d) conversion to nucleotides
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Amino acids are the main substrates for gluconeogenesis in fasting. Choose the amino acid metabolites that can be used for the synthesis of glucose: a) pyruvate b) HMG-CoA c) acetoacetyl-CoA d) oxaloacetate
Amino acids are the main substrates for gluconeogenesis in fasting. Choose the amino acid metabolites that can be used for the synthesis of glucose: a) pyruvate b) HMG-CoA c) acetoacetyl-CoA d) oxaloacetate
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After a meal, amino acids are the primary energy producing substrates for hepatocytes. Choose the pathways which allow to use ALA as an energy source during this period: a) synthesis of ketone bodies b) transamination c) oxidative decarboxylation of pyruvate d) TCA cycle
After a meal, amino acids are the primary energy producing substrates for hepatocytes. Choose the pathways which allow to use ALA as an energy source during this period: a) synthesis of ketone bodies b) transamination c) oxidative decarboxylation of pyruvate d) TCA cycle
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Choose the correct answer. Hydrochloric acid in the stomach: a) cause denaturation of proteins b) has a bactericidal effect c) stimulates lipase d) cause activation of pepsinogen
Choose the correct answer. Hydrochloric acid in the stomach: a) cause denaturation of proteins b) has a bactericidal effect c) stimulates lipase d) cause activation of pepsinogen
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Choose exopeptidases: a) carboxypeptidases A and B b) aminopeptidase c) trypsin d) elastase
Choose exopeptidases: a) carboxypeptidases A and B b) aminopeptidase c) trypsin d) elastase
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Choose the coenzyme of transaminases:
Choose the coenzyme of transaminases:
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Choose an enzyme involved in the neutralization of biogenic amines:
Choose an enzyme involved in the neutralization of biogenic amines:
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Choose the compound that is formed from aspartate in the transamination reaction:
Choose the compound that is formed from aspartate in the transamination reaction:
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Histamine is formed in the process of:
Histamine is formed in the process of:
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Choose the function of GABA:
Choose the function of GABA:
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From these statements, choose the one that characterizes the serotonin:
From these statements, choose the one that characterizes the serotonin:
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Choose the correct ending of the sentence. Aminotransferases:
Choose the correct ending of the sentence. Aminotransferases:
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Which vitamin is a part of coenzyme that is used by amino acid decarboxylases?
Which vitamin is a part of coenzyme that is used by amino acid decarboxylases?
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Catecholamines are synthesized from:
Catecholamines are synthesized from:
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What disease is caused by the deficiency of phenylalanine hydroxylase?
What disease is caused by the deficiency of phenylalanine hydroxylase?
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Melanin is synthesized from:
Melanin is synthesized from:
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Which enzyme catalyzes the following reaction: Pyruvate + Glutamate ↔ Alanine + α-Ketoglutarate
Which enzyme catalyzes the following reaction: Pyruvate + Glutamate ↔ Alanine + α-Ketoglutarate
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Match the missing component to the ornithine cycle reaction:
Match the missing component to the ornithine cycle reaction:
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Select the appropriate enzyme for the ornithine cycle reaction: citrulline + aspartate → argininosuccinate
Select the appropriate enzyme for the ornithine cycle reaction: citrulline + aspartate → argininosuccinate
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The final product of detoxification of ammonia in the liver is:
The final product of detoxification of ammonia in the liver is:
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Select the cause of elevated level of urea in blood:
Select the cause of elevated level of urea in blood:
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Choose the amino acid that participates in the formation of disulfide bonds:
Choose the amino acid that participates in the formation of disulfide bonds:
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Choose the amino acid that is a precursor of catecholamines:
Choose the amino acid that is a precursor of catecholamines:
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Select the altered chemical reaction in patients with alcaptonuria:
Select the altered chemical reaction in patients with alcaptonuria:
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Choose the enzyme that catalyzes the reaction Glu + NH3 + ATP → Gln +ADP + H3PO4:
Choose the enzyme that catalyzes the reaction Glu + NH3 + ATP → Gln +ADP + H3PO4:
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Choose the correct statement:
Choose the correct statement:
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Select the pathology associated with DOPA decarboxylase deficiency:
Select the pathology associated with DOPA decarboxylase deficiency:
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What transformations occur during post-transcriptional mRNA processing? Match each process to its description:
What transformations occur during post-transcriptional mRNA processing? Match each process to its description:
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The diagnosis confirmation was provided by the finding of high blood level of:
The diagnosis confirmation was provided by the finding of high blood level of:
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All these effects are characteristic of insulin, except:
All these effects are characteristic of insulin, except:
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All statements regarding insulin are true, except:
All statements regarding insulin are true, except:
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Insulin is necessary for transport of glucose to the following pair of tissues:
Insulin is necessary for transport of glucose to the following pair of tissues:
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Binding of insulin to its receptor results in stimulation of enzyme activity, except for:
Binding of insulin to its receptor results in stimulation of enzyme activity, except for:
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Diabetes is characterized by all of the following metabolic changes, except:
Diabetes is characterized by all of the following metabolic changes, except:
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Glucocorticoids have a catabolic effect on:
Glucocorticoids have a catabolic effect on:
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All the following compounds are produced in the liver, except:
All the following compounds are produced in the liver, except:
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One of the main functions of the liver is to maintain blood glucose level. Even with the complete exclusion of carbohydrates from the diet, glucose blood level is maintained mainly due to:
One of the main functions of the liver is to maintain blood glucose level. Even with the complete exclusion of carbohydrates from the diet, glucose blood level is maintained mainly due to:
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Unconjugated bilirubin in blood is transferred bound to albumin because:
Unconjugated bilirubin in blood is transferred bound to albumin because:
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Indirect bilirubin is produced in:
Indirect bilirubin is produced in:
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Ethanol oxidation has the following characteristics:
Ethanol oxidation has the following characteristics:
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Obstructive jaundice is accompanied by increasing blood level of:
Obstructive jaundice is accompanied by increasing blood level of:
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Hemolytic jaundice is accompanied by:
Hemolytic jaundice is accompanied by:
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Hepatic jaundice is accompanied by:
Hepatic jaundice is accompanied by:
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Hageman factor:
Hageman factor:
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Initiation complex of extrinsic pathway of coagulation contains:
Initiation complex of extrinsic pathway of coagulation contains:
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Tenase complex contains:
Tenase complex contains:
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Choose the correct statements about role of calcium ions (factor IV) in blood coagulation:
Choose the correct statements about role of calcium ions (factor IV) in blood coagulation:
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Antithrombin III:
Antithrombin III:
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The anticoagulant activity of heparin is based on:
The anticoagulant activity of heparin is based on:
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Choose the plasminogen activators:
Choose the plasminogen activators:
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Protein C:
Protein C:
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Factor Xa:
Factor Xa:
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Factor XIII:
Factor XIII:
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Vitamin K takes part in the synthesis of γ-carboxyglutamate in:
Vitamin K takes part in the synthesis of γ-carboxyglutamate in:
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Plasma proteins have all these functions, except:
Plasma proteins have all these functions, except:
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Albumins perform all of the following functions, except:
Albumins perform all of the following functions, except:
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Haptoglobin - is:
Haptoglobin - is:
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Paraproteinemia - is:
Paraproteinemia - is:
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The reduced content of haptoglobin in blood results in:
The reduced content of haptoglobin in blood results in:
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Choose the correct statements regarding the formation of ketone bodies:
Choose the correct statements regarding the formation of ketone bodies:
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In diabetes, ketosis could develop due to the following reasons:
In diabetes, ketosis could develop due to the following reasons:
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For ketone bodies utilization, the following conditions are required:
For ketone bodies utilization, the following conditions are required:
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Choose the correct statements regarding the ketone bodies:
Choose the correct statements regarding the ketone bodies:
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Liberation of arachidonic acid from membrane phospholipids catalyzed by phospholipase A2 is inhibited by:
Liberation of arachidonic acid from membrane phospholipids catalyzed by phospholipase A2 is inhibited by:
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Anti-inflammatory activity of aspirin is based on inhibition of:
Anti-inflammatory activity of aspirin is based on inhibition of:
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Key enzyme in leukotriene synthesis is:
Key enzyme in leukotriene synthesis is:
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Study Notes
Amino Acid Structure
- Isoleucine side chain contains a branched hydrocarbon chain
- Phenylalanine side chain contains an aromatic ring
- Methionine side chain contains a sulfomethyl group
- Histidine has basic properties
- Glycine is the only amino acid that does not have stereo-isomers
- Lysine, arginine, and histidine have no charge in a weakly alkaline medium
- All hydrophobic amino acids except lysine have no charge
Protein Structure
- Primary structure: linear sequence of amino acids joined by peptide bonds
- Primary structure is stabilized by peptide bonds
- Basis of the protein primary structure is the polypeptide chain
- Tertiary structure: arrangement of the entire polypeptide chain in space
- Factors that form the protein tertiary structure: water environment, hydrophobic interactions, and ionic bonds
- Quaternary structure: location of protomers and the character of bonds between them in an oligomeric protein
Protein-Ligand Interactions
- Western blot analysis involves antigen-antibody interactions
- Protein-ligand interactions are complementary in shape and charge
- Myoglobin has a non-protein part (heme) that binds to globin via a coordination bond
- In lipoproteins, hydrophobic bonds are formed between lipid and protein parts
- In nucleoproteins, ionic bonds are formed between nucleic acid and protein parts
Protein Stability and Denaturation
- Factors affecting protein stability: charge of the protein molecule, hydration shell, and molecular weight
- Denaturation involves the destruction of non-covalent bonds, including hydrogen, ionic, and disulfide bonds
- Denaturation leads to changes in protein solubility, loss of function, and changes in non-covalent bonds
Enzymes
- Characteristics of enzymes: high specificity, high efficiency, and optimal pH and temperature
- Factors affecting enzyme activity: substrate concentration, enzyme concentration, pH, temperature, and inhibitors
- Competitive inhibitors bind to the active site, while non-competitive inhibitors bind to an allosteric site
- Allosteric effectors can be activators or inhibitors, and their action can be reversed by increasing substrate concentration
- Coenzymes: NAD+, NADP+, FMN, and FAD are coenzymes of oxidoreductases
- Enzyme regulation: feedback inhibition, allosteric regulation, and covalent modification
Enzyme Kinetics
- Michaelis-Menten constant (Km) is the substrate concentration at which the reaction rate is half-maximal
- Km value indicates the enzyme's affinity for the substrate
- Lineweaver-Burk graph: built in the double reciprocals of enzymatic reaction rate and substrate concentration
- Types of enzyme inhibitors: competitive, non-competitive, and uncompetitive
Enzyme Classification
- Oxidoreductases: catalyze oxidation-reduction reactions
- Transferases: catalyze the transfer of a functional group
- Hydrolases: catalyze the hydrolysis of a covalent bond
- Ligases: catalyze the formation of a covalent bond
- Lyases: catalyze the cleavage of a covalent bond without hydrolysis
- Isomerases: catalyze the rearrangement of a molecule### Enzymes
- A quaternary structure refers to the arrangement of multiple polypeptide chains (subunits) in an enzyme
- Enzymes have 4 isoenzyme forms
- Lactate dehydrogenase catalyzes the reaction of reversible conversion of pyruvate to lactate
- Oxidoreductases, like lactate dehydrogenase, catalyze oxidation and reduction reactions
- Enzymes can be used as drugs, but their use is limited by their short duration of action, high specificity, low stability, and difficulty in obtaining highly purified preparations
Enzyme Leaks
- Enzyme leakage from the cell into the blood is influenced by:
- Size of enzyme molecules
- Presence of enzyme activators
- Intracellular localization of enzymes
- Enzyme life-time
Immobilized Enzymes
- Advantages of immobilized enzymes over non-immobilized enzymes:
- Reusability
- Increased stability
- Directional transport (targeted delivery)
Urine Diastase
- Urine diastase is:
- A diagnostic test for pancreatic diseases
- Measures amylase activity in urine
- Not a measure of starch or its cleavage products in urine
Treatment of Septic Wounds
- Enzymes used in treatment of septic wounds:
- Trypsin
- Deoxyribonuclease
- Not alkaline phosphatase or amylase
Pancreatic Autolysis
- Activation of trypsin and other enzymes can lead to pancreatic autolysis
Indicator Enzymes
- Indicator enzymes are:
- Enzymes whose increased activity in plasma indicates pathology in internal organs and tissues
- Examples: aminotransferases, lactate dehydrogenase, creatine kinase
Aerobic Glycolysis
- Reaction of aerobic glycolysis associated with oxidative phosphorylation:
- Glyceraldehyde 3-phosphate + NAD+ + H3PO4 → 1,3-Diphosphoglycerate + NADH
Gluconeogenesis
- Gluconeogenesis is the synthesis of glucose from non-carbohydrate sources
- Gluconeogenesis involves the reversal of glycolysis, with some modifications
- Phosphofructokinase is not a gluconeogenic enzyme
Glycogenolysis
- Glycogenolysis is the breakdown of glycogen to glucose
- Glycogen phosphorylase cleaves α-1,4-glycosidic bonds in glycogen
Glycogen Synthesis
- Glycogen synthase catalyzes the formation of α-1,4-glycosidic bonds in glycogen
- The inclusion of 1 mole of glucose into glycogen requires 6 moles of high-energy compounds
Phosphofructokinase
- Phosphofructokinase catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-diphosphate
Glycolysis
- Pyruvate kinase catalyzes the conversion of phosphoenolpyruvate to pyruvate
- During anaerobic glycolysis, NADH is oxidized to NAD+ while reducing pyruvate to lactate
- During aerobic glycolysis, NADH is oxidized to NAD+ in the electron transport chain
Glucose Transport
- Insulin-dependent glucose transporters are present in:
- Adipose tissue
- Skeletal muscles
Indigestible Polysaccharides
- Indigestible polysaccharides include:
- Cellulose
- Pectins
- Not glycogen or lactulose
Carbohydrate Metabolism
- Stages of aerobic glucose oxidation to end products (CO2 and H2O):
- Glycolysis
- Oxidative decarboxylation of pyruvate
- Tricarboxylic acid cycle
Pentose Phosphate Pathway
- The pentose phosphate pathway:
- Generates NADPH in the cytosol
- Provides ribose-5-phosphate for nucleic acid synthesis
- Involves the reduction of NADP+
Uronic Acid Pathway
- The uronic acid pathway:
- Provides UDP-glucuronic acid for detoxification of xenobiotics and biosynthesis of glycosaminoglycans
- Involves the oxidation of glucose to glucuronic acid
Glucose-6-Phosphatase Deficiency
- Glucose-6-phosphatase deficiency leads to:
- Von Gierke's disease
- Impaired glycogenolysis and glucose release from the liver
Blood Glucose Regulation
- Insulin decreases blood glucose by:
- Stimulating glycolysis
- Inhibiting gluconeogenesis and glycogenolysis
- Glucagon and epinephrine increase blood glucose by:
- Stimulating glycogenolysis and gluconeogenesis
- Inhibiting glycolysisHere are the study notes:
- Lipid Metabolism*
Fatty Acid Oxidation
- Electron Transport Chain: Uncoupling of tissue respiration and phosphorylation occurs due to increasing the permeability of the inner mitochondrial membrane to protons.
- Inhibitors of Cytochrome c Oxidoreductase: Cyanides bind to the iron atoms of cytochromes a and a3, inhibiting tissue respiration.
Regulation of Lipid Metabolism
- Regulatory Enzymes of Citric Acid Cycle: Isocitrate dehydrogenase is the regulatory enzyme of the citric acid cycle.
- Inhibitor of Regulatory Enzymes: ATP is an inhibitor of regulatory enzymes of the citric acid cycle.
Lipid Structure and Classification
- Triacylglycerols: Consist of a glycerol backbone and three fatty acid chains.
- Phospholipids: Amphipathic molecules composed of a glycerol backbone, two fatty acid chains, and a phosphate group.
- Lecithin: A type of phospholipid with a choline head group.
- Sphingomyelin: A type of phospholipid with a sphingosine backbone and a choline head group.
- Styrene: A type of simple lipid.
- Cholesterol: A type of unsaponifiable lipid.
Lipid Digestion and Absorption
- Lipases: Pancreatic lipase hydrolyzes triacylglycerols into fatty acids and glycerol.
- Micelle Formation: Bile salts facilitate the formation of micelles, which are absorbed into enterocytes.
Fatty Acid Synthesis
- Acetyl-CoA Carboxylase: The key enzyme in fatty acid synthesis, catalyzing the reaction of acetyl-CoA and CO2 to form malonyl-CoA.
- NADPH: The coenzyme required for fatty acid synthesis.
Cholesterol Synthesis
- Mevalonate: An intermediate in cholesterol synthesis.
- Farnesyl Pyrophosphate: An intermediate in cholesterol synthesis, with 15 carbon atoms.
Eicosanoids
- Arachidonic Acid: The precursor for eicosanoid synthesis.
- Thromboxanes: Involved in platelet aggregation.
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Description
Identify the structural features of various amino acids, including isoleucine and phenylalanine.