Podcast
Questions and Answers
Which of the following statements correctly describes GPCRs?
Which of the following statements correctly describes GPCRs?
What recognition site is commonly found in the intracellular loop 2 of GPCRs?
What recognition site is commonly found in the intracellular loop 2 of GPCRs?
Which feature distinguishes the different classes of GPCRs?
Which feature distinguishes the different classes of GPCRs?
What is the role of post-translational modifications in GPCRs?
What is the role of post-translational modifications in GPCRs?
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What type of modification is commonly involved in the regulation of GPCRs?
What type of modification is commonly involved in the regulation of GPCRs?
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Which of the following best describes the structure of a GPCR?
Which of the following best describes the structure of a GPCR?
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Which components primarily enable cells to sense and respond to their environment via GPCRs?
Which components primarily enable cells to sense and respond to their environment via GPCRs?
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What is a common feature of the alpha helices within GPCRs?
What is a common feature of the alpha helices within GPCRs?
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What is the function of the DRY motif in GPCRs?
What is the function of the DRY motif in GPCRs?
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Which of the following statements accurately describes GPCRs?
Which of the following statements accurately describes GPCRs?
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What type of molecules do GPCRs primarily interact with?
What type of molecules do GPCRs primarily interact with?
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How are GPCRs classified into different subfamilies?
How are GPCRs classified into different subfamilies?
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What happens to GPCRs in the absence of the DRY motif?
What happens to GPCRs in the absence of the DRY motif?
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Where do low-molecular-mass ligands primarily bind in GPCRs?
Where do low-molecular-mass ligands primarily bind in GPCRs?
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Which subfamily of GPCRs includes most of the known receptors?
Which subfamily of GPCRs includes most of the known receptors?
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What is the role of TM-III and TM-VI in GPCR activation?
What is the role of TM-III and TM-VI in GPCR activation?
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What role do PARs play in the signaling process?
What role do PARs play in the signaling process?
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What consequence does receptor internalization have?
What consequence does receptor internalization have?
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Which type of mutation specifically targets basal activity in GPCRs?
Which type of mutation specifically targets basal activity in GPCRs?
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What is a potential effect of classic LOF mutations on GPCRs?
What is a potential effect of classic LOF mutations on GPCRs?
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What effect do some LOF mutations have on the interacting protein function?
What effect do some LOF mutations have on the interacting protein function?
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How do some LOF mutations affect agonist binding?
How do some LOF mutations affect agonist binding?
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What is the role of GPCRs synthesized in the RER?
What is the role of GPCRs synthesized in the RER?
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Which effect may continue due to receptor desensitization?
Which effect may continue due to receptor desensitization?
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Which post-translational modification primarily involves the addition of a phosphate group to proteins?
Which post-translational modification primarily involves the addition of a phosphate group to proteins?
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What effect does glycosylation have on proteins?
What effect does glycosylation have on proteins?
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What role does ubiquitination play in cellular processes?
What role does ubiquitination play in cellular processes?
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Which of the following is a critical role of phosphorylation?
Which of the following is a critical role of phosphorylation?
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Which post-translational modification is primarily associated with targeting proteins to membranes?
Which post-translational modification is primarily associated with targeting proteins to membranes?
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What is a characteristic of loss-of-function (LOF) mutations in GPCRs?
What is a characteristic of loss-of-function (LOF) mutations in GPCRs?
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Which of the following displays different levels of constitutive activity?
Which of the following displays different levels of constitutive activity?
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What effect do gain-of-function (GOF) mutations typically have on GPCR sensitivity?
What effect do gain-of-function (GOF) mutations typically have on GPCR sensitivity?
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Which statement about G-proteins is true?
Which statement about G-proteins is true?
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What outcome is possible due to mutations that affect GPCR interaction with G proteins?
What outcome is possible due to mutations that affect GPCR interaction with G proteins?
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What is a possible characteristic of GPCRs displaying increased basal activity?
What is a possible characteristic of GPCRs displaying increased basal activity?
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What role do G-proteins play in GPCR signaling?
What role do G-proteins play in GPCR signaling?
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What is a feature of the GTP-bound complex of G-proteins?
What is a feature of the GTP-bound complex of G-proteins?
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What is the role of G-proteins in cell signaling?
What is the role of G-proteins in cell signaling?
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What effect does cholera toxin (CTX) have on the Gαs protein?
What effect does cholera toxin (CTX) have on the Gαs protein?
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Which of the following does Gαq activate?
Which of the following does Gαq activate?
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What is the primary consequence of Gαi being blocked from interacting with GPCRs by pertussis toxin?
What is the primary consequence of Gαi being blocked from interacting with GPCRs by pertussis toxin?
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Which post-translational modification is primarily responsible for membrane targeting in proteins?
Which post-translational modification is primarily responsible for membrane targeting in proteins?
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What is the function of Regulators of G-protein Signaling (RGSs)?
What is the function of Regulators of G-protein Signaling (RGSs)?
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What role do Guanine-nucleotide Exchange Factors (GEFs) play in G-protein signaling?
What role do Guanine-nucleotide Exchange Factors (GEFs) play in G-protein signaling?
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What is a primary function of Protein Kinase A (PKA) after it is activated?
What is a primary function of Protein Kinase A (PKA) after it is activated?
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Flashcards
GPCR
GPCR
G-protein coupled receptors are a large family of cell surface receptors that are involved in signal transduction pathways. They are characterized by their seven transmembrane domains, which form a serpentine structure.
7TMR
7TMR
Another name for GPCRs. Stands for 'seven transmembrane receptors.'
Serpentine Receptors
Serpentine Receptors
A descriptive term for GPCRs because of their snake-like, coiled structure within the cell membrane.
Extracellular Domains
Extracellular Domains
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Intracellular Loops
Intracellular Loops
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DRY Motif
DRY Motif
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Phosphorylation Sites
Phosphorylation Sites
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β2-adrenergic receptor
β2-adrenergic receptor
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GPCR activation
GPCR activation
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GPCR family
GPCR family
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GPCR classes
GPCR classes
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Ligand binding sites
Ligand binding sites
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GPCR signaling pathway
GPCR signaling pathway
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GPCR importance
GPCR importance
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Calcium sensors and metabotropic receptors
Calcium sensors and metabotropic receptors
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GPCR basal activity
GPCR basal activity
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GPCR desensitization
GPCR desensitization
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LOF mutations
LOF mutations
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How LOF mutations affect GPCR basal activity
How LOF mutations affect GPCR basal activity
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How LOF mutations affect GPCR structure
How LOF mutations affect GPCR structure
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LOF mutations and interacting proteins
LOF mutations and interacting proteins
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Phosphorylation
Phosphorylation
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Glycosylation
Glycosylation
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Lipidation
Lipidation
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Ubiquitination
Ubiquitination
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Constitutive Activity
Constitutive Activity
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Loss-of-Function (LOF) Mutations
Loss-of-Function (LOF) Mutations
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Gain-of-Function (GOF) Mutations
Gain-of-Function (GOF) Mutations
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Biased Agonism
Biased Agonism
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G-Proteins
G-Proteins
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GTP/GDP Binding
GTP/GDP Binding
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Heterotrimeric G-Proteins
Heterotrimeric G-Proteins
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GPCR/Gαs
GPCR/Gαs
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GPCR/Gαq
GPCR/Gαq
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RGSs
RGSs
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Cholera toxin
Cholera toxin
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Study Notes
G-Protein Coupled Receptors (GPCRs)
- GPCRs are a large family of transmembrane receptors.
- They are responsible for enabling cells to respond to their surroundings.
- They have seven transmembrane helices (7TMR).
- They are also known as hepta-helical receptors or serpentine receptors.
Learning Objectives
- Introduce the basic aspects of GPCRs, including classification and structure.
- Introduce G-proteins and their characteristics.
- Introduce the effect of post-translational modifications on protein action, particularly the GPCR.
Lecture Outline
- Part 1: GPCR general qualities and classes
- Part 2: G-proteins
- Part 3: Post-translational modifications
Part 1: GPCR General Features and Classes
- GPCRs are seven transmembrane receptors (7TMR).
- These receptors include hepta-helical and serpentine receptors.
Nobel Prize (2012)
- Robert J. Lefkowitz and Brian K. Kobilka were awarded the Nobel Prize in Chemistry.
- Their work characterized G-protein-coupled receptors (GPCRs).
Historical Context
- 1968: Lefkowitz used radiolabelled hormones to identify receptors.
- 1980: Lefkowitz and colleagues proposed the widely accepted 'ternary complex model' for receptor activation.
- 1986: Lefkowitz, Kobilka and co-workers cloned the ẞ2-adrenergic receptor, revealing its transmembrane structure.
- 2011: Kobilka and colleagues solved the crystal structure of the β2-adrenergic receptor in complex with an activating ligand and a G protein.
7TM Superfamily of GPCRs
- Includes the β2-adrenergic receptor.
- Has phosphorylation sites for PKA and GRK2 (β2-adrenergic receptor kinase).
7TM Superfamily of GPCR (Detailed View)
- Adrenaline molecule binds between membrane-spanning sections.
- N-terminal domain is glycosylated.
- Catechol hydroxyls of adrenaline interact with serine residues in the membrane-spanning α-helix E.
GPCR Special Features
- Seven transmembrane domains with highly conserved α helices.
- Three extracellular loops (ELs).
- Three or four intracellular loops (ILs).
- S-bridge between extracellular loops 1 and 2.
- Consensus sequences, such as Aspartate-Arginine-Tyrosine (DRY).
- DRY motif is key for inactive to active receptor conformation switching.
- In the absence of the DRY motif, receptors are constitutively active.
Active vs. Inactive Conformations
- GPCR activation likely involves the separation of the third transmembrane (TM-III) and TM-VI domains and a twist in TM-VI.
- These changes potentially lead to GPCR-G-protein interactions along the intracellular loop 3 (IL3).
GPCR Superfamily
- The largest known receptor family.
- Includes around 800-950 genes and contributes over 1% of the human genome.
- Receptors for diverse molecules, including neurotransmitters, odorants, lipids, neuropeptides, and large glycoprotein hormones.
- A target for a significant portion (40%-50%) of best-selling drugs.
Main GPCR Subfamilies
- GPCRs are grouped into six major subfamilies/classes.
- Rhodopsin-like receptors (Class A).
- Glucagon-like receptors (Class B).
- Metabotropic glutamate and GABAB receptor family (Class C).
- Subfamilies grouped by >20% sequence homology.
Ligands-GPCR Binding (Low-molecular mass)
- Binding of low-molecular-mass ligands, such as amines, nucleotides, and eicosanoids.
- These ligands bind to sites within the hydrophobic core.
Ligands-GPCR Binding (Peptides)
- Binding of peptide hormones (40-100 kDa).
- Peptide ligands are accommodated on the exterior face of the receptor.
Ligands-GPCR Binding (Glycoprotein Hormones)
- Binding of glycoprotein hormones like TSH, LH, and FSH.
- Protein ligands are accommodated outside the receptor.
Ligands-GPCR Binding (Calcium Sensors)
- Calcium sensors and metabotropic receptors (Ca2+, Glutamate, GABAB).
- Binding to large N-terminal extensions induces a conformational change.
- These receptors affect the extension, and then the receptor.
Ligands-GPCR Binding (Proteinase-Activated Receptors)
- Proteinase activated receptors (PARs).
- Cleaved; newly exposed N-terminus acts as an auto-ligand.
- Freed peptide may also separately interact with another receptor.
Life Cycle of a Wild-Type GPCR
- GPCR synthesis in the RER.
- An interacting protein guides some GPCRs to the plasma membrane.
- GPCRs may be silent, or display basal activity.
- Agonist binding activates G-protein and arrestin-dependent effects .
- Receptor desensitization and internalization occurs.
Loss-of-Function (LOF) Mutations
- Specific LOF mutations may only affect basal activity.
- LOF mutations may lead to constitutive desensitization.
- Classic LOF mutations affect gross protein structure; receptors are trapped in the RER.
Loss-of-Function (LOF) Mutations (Continued)
- Other LOF mutations may interfere with interactions with interacting proteins or with agonist binding.
- LOF mutations may interrupt intramolecular activation.
- Other LOF mutations may interfere with the ability to bind to G proteins.
Gain-of-Function (GOF) Mutations
- Wild-type GPCRs might display very different levels of constitutive activity.
- Some GOF mutations may increase receptor sensitivity to the normal agonist with minimal basal activity change.
- Other GOF mutations may cause a receptor to be sensitive to normally inert positive allosteric modulators.
- This leads to an increase in sensitivity to the normal agonist.
GPCRs and Diverse Ligands
- GPCRs are activated by a wide range of ligands including proteins, peptides, lipids, nucleosides, nucleotides, ions, biogenic amines, amino acids, and dicarboxylic acids.
G-protein Coupled Receptor Signaling
- G-proteins are coupled to receptors and enzymes.
- G-proteins act as a bridge between GPCRs and effectors.
- They consist of α, β, and γ subunits.
G-protein α Subunit
- α and γ subunits are attached to the plasma membrane by lipid anchors.
- α can bind either GDP or GTP; the bound nucleotide determines its activity status.
- When GDP is bound, the G-protein is inactive.
G-proteins, Effectors, and Regulation
- G-proteins affect effector systems by promoting or decreasing activity in response to stimuli.
- G-proteins have GTPase activity; regulation is via RGSs and GEFs.
Methods to Study G-proteins
- Cholera toxin (CTX) sensitivity test.
- Pertussis toxin (PTX) sensitivity test.
Other Topics (Part 3)
- Post-translational modifications (PTMs): Chemical modifications of proteins that occur after translation; significant role in proteomics.
- Types of PTMs: Phosphorylation, glycosylation, lipidation, ubiquitination, S-nitrosylation, methylation, N-acetylation, proteolysis
Phosphorylation
- Addition of a phosphate group to a protein, primarily on serine, threonine, or tyrosine residues.
- Plays a crucial role in cell cycle, growth, apoptosis, and signaling pathways.
Glycosylation
- Addition of a glycosyl group (carbohydrate) to a protein.
- This primarily occurs on asparagine, hydroxylysine, serine, or threonine residues.
- Important in folding, conformation, and protein function.
Lipidation
- Proteins are targeted to membranes, like the endoplasmic reticulum, Golgi apparatus, mitochondria, and plasma membrane.
- Addition of lipid anchors (e.g., farnesyl or geranylgeranyl group on Cys residues).
Ubiquitination
- Small regulatory protein (ubiquitin) can be attached to and label proteins for destruction.
- This affects cell cycle regulation, DNA repair, apoptosis, immune processes, and organelle biogenesis.
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