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Questions and Answers

Which of the following statements correctly describes GPCRs?

  • GPCRs are exclusively found in the intracellular space.
  • GPCRs consist of seven transmembrane helices. (correct)
  • GPCRs can only interact with a single type of G-protein.
  • GPCRs are classified into three main types.
  • What recognition site is commonly found in the intracellular loop 2 of GPCRs?

  • Glycine-Cysteine-Methionine (GCM)
  • Serine-Glutamate-Aspartate (SGE)
  • Aspartate-Arginine-Tyrosine (DRY) (correct)
  • Leucine-Phenylalanine-Tyrosine (LFT)
  • Which feature distinguishes the different classes of GPCRs?

  • The length of the intracellular loops.
  • The presence of glycosylation on the N-terminal domain.
  • The number of transmembrane domains.
  • The type of G-proteins they couple with. (correct)
  • What is the role of post-translational modifications in GPCRs?

    <p>They can alter the receptor's functional activity. (C)</p> Signup and view all the answers

    What type of modification is commonly involved in the regulation of GPCRs?

    <p>Phosphorylation (D)</p> Signup and view all the answers

    Which of the following best describes the structure of a GPCR?

    <p>It has three extracellular and three intracellular loops. (A)</p> Signup and view all the answers

    Which components primarily enable cells to sense and respond to their environment via GPCRs?

    <p>GPCRs and G-proteins. (A)</p> Signup and view all the answers

    What is a common feature of the alpha helices within GPCRs?

    <p>They have a conserved structure across different GPCRs. (C)</p> Signup and view all the answers

    What is the function of the DRY motif in GPCRs?

    <p>It regulates the isomerization of receptors between inactive and active conformations. (B)</p> Signup and view all the answers

    Which of the following statements accurately describes GPCRs?

    <p>They are the target of the majority of prescribed drugs. (A)</p> Signup and view all the answers

    What type of molecules do GPCRs primarily interact with?

    <p>A diverse array, including neurotransmitters and lipids. (D)</p> Signup and view all the answers

    How are GPCRs classified into different subfamilies?

    <p>According to their sequence homology. (B)</p> Signup and view all the answers

    What happens to GPCRs in the absence of the DRY motif?

    <p>They are constitutively active. (C)</p> Signup and view all the answers

    Where do low-molecular-mass ligands primarily bind in GPCRs?

    <p>Within the hydrophobic core of the receptor. (B)</p> Signup and view all the answers

    Which subfamily of GPCRs includes most of the known receptors?

    <p>Class A - Rhodopsin-like group. (D)</p> Signup and view all the answers

    What is the role of TM-III and TM-VI in GPCR activation?

    <p>They undergo separation and twisting during receptor activation. (D)</p> Signup and view all the answers

    What role do PARs play in the signaling process?

    <p>PARs are auto-ligands that initiate receptor activation. (C)</p> Signup and view all the answers

    What consequence does receptor internalization have?

    <p>It maintains activation of β arrestin-dependent effects. (C)</p> Signup and view all the answers

    Which type of mutation specifically targets basal activity in GPCRs?

    <p>Specific LOF mutations. (A)</p> Signup and view all the answers

    What is a potential effect of classic LOF mutations on GPCRs?

    <p>Trapping the receptor in the RER. (A)</p> Signup and view all the answers

    What effect do some LOF mutations have on the interacting protein function?

    <p>They prevent the receptor from reaching the plasma membrane. (B)</p> Signup and view all the answers

    How do some LOF mutations affect agonist binding?

    <p>They interfere with agonist binding. (B)</p> Signup and view all the answers

    What is the role of GPCRs synthesized in the RER?

    <p>They require interaction with another protein to be routed to the plasma membrane. (D)</p> Signup and view all the answers

    Which effect may continue due to receptor desensitization?

    <p>G protein-dependent effects. (D)</p> Signup and view all the answers

    Which post-translational modification primarily involves the addition of a phosphate group to proteins?

    <p>Phosphorylation (D)</p> Signup and view all the answers

    What effect does glycosylation have on proteins?

    <p>Alters protein targeting (C)</p> Signup and view all the answers

    What role does ubiquitination play in cellular processes?

    <p>Labels proteins for degradation (D)</p> Signup and view all the answers

    Which of the following is a critical role of phosphorylation?

    <p>Regulation of protein interactions (B)</p> Signup and view all the answers

    Which post-translational modification is primarily associated with targeting proteins to membranes?

    <p>Lipidation (D)</p> Signup and view all the answers

    What is a characteristic of loss-of-function (LOF) mutations in GPCRs?

    <p>They interfere with the ability to bind G proteins. (B)</p> Signup and view all the answers

    Which of the following displays different levels of constitutive activity?

    <p>Both wild-type and mutated GPCRs (A)</p> Signup and view all the answers

    What effect do gain-of-function (GOF) mutations typically have on GPCR sensitivity?

    <p>They make GPCRs sensitive to inert positive allosteric modulators. (B)</p> Signup and view all the answers

    Which statement about G-proteins is true?

    <p>Their structure changes based on the bound nucleotide. (D)</p> Signup and view all the answers

    What outcome is possible due to mutations that affect GPCR interaction with G proteins?

    <p>Biased activation affecting specific protein interactions. (C)</p> Signup and view all the answers

    What is a possible characteristic of GPCRs displaying increased basal activity?

    <p>They may have altered responses to normal agonists. (B)</p> Signup and view all the answers

    What role do G-proteins play in GPCR signaling?

    <p>They act as molecular switches that interact with downstream proteins. (D)</p> Signup and view all the answers

    What is a feature of the GTP-bound complex of G-proteins?

    <p>It participates in reversible interactions with higher affinity. (D)</p> Signup and view all the answers

    What is the role of G-proteins in cell signaling?

    <p>They couple GPCRs to various effector proteins. (D)</p> Signup and view all the answers

    What effect does cholera toxin (CTX) have on the Gαs protein?

    <p>It causes ADP-ribosylation, leading to loss of GTPase activity. (A)</p> Signup and view all the answers

    Which of the following does Gαq activate?

    <p>Phospholipase C (PLC) (C)</p> Signup and view all the answers

    What is the primary consequence of Gαi being blocked from interacting with GPCRs by pertussis toxin?

    <p>Inhibition of adenylyl cyclase (AC) activity. (C)</p> Signup and view all the answers

    Which post-translational modification is primarily responsible for membrane targeting in proteins?

    <p>Myristoylation and palmitoylation (A)</p> Signup and view all the answers

    What is the function of Regulators of G-protein Signaling (RGSs)?

    <p>They promote the dissociation of GTP from G-proteins. (A)</p> Signup and view all the answers

    What role do Guanine-nucleotide Exchange Factors (GEFs) play in G-protein signaling?

    <p>They facilitate the dissociation of GDP and promote GTP binding. (B)</p> Signup and view all the answers

    What is a primary function of Protein Kinase A (PKA) after it is activated?

    <p>Phosphorylation of various proteins affecting multiple cellular processes. (B)</p> Signup and view all the answers

    Flashcards

    GPCR

    G-protein coupled receptors are a large family of cell surface receptors that are involved in signal transduction pathways. They are characterized by their seven transmembrane domains, which form a serpentine structure.

    7TMR

    Another name for GPCRs. Stands for 'seven transmembrane receptors.'

    Serpentine Receptors

    A descriptive term for GPCRs because of their snake-like, coiled structure within the cell membrane.

    Extracellular Domains

    The parts of the GPCR that stick outside of the cell membrane. They are responsible for binding signaling molecules (like hormones, neurotransmitters, etc.).

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    Intracellular Loops

    The parts of the GPCR that are inside the cell membrane. They interact with G proteins, which relay the signal inside the cell.

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    DRY Motif

    A conserved amino acid sequence (Aspartate-Arginine-Tyrosine) found in the second intracellular loop (IL2) of GPCRs. Essential for GPCR function.

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    Phosphorylation Sites

    Specific amino acid residues on the GPCR that can be modified by the addition of a phosphate group. This modification can regulate the activity of the receptor.

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    β2-adrenergic receptor

    A well-studied GPCR that binds to adrenaline (epinephrine). It is involved in various physiological processes, including heart rate regulation.

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    GPCR activation

    GPCRs undergo a conformational change upon ligand binding, transitioning from an inactive to an active state. This involves a separation of transmembrane domains (TM-III and TM-VI) and a twist in TM-VI, pulling the third cytoplasmic loop (IL3) into the cell.

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    GPCR family

    The largest known receptor family, constituting over 1% of the human genome. It includes over 800-950 genes and comprises receptors for various molecules: neurotransmitters, odorants, lipids, neuropeptides, and large glycoprotein hormones.

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    GPCR classes

    GPCRs are grouped into six main subfamilies or classes based on sequence homology. Class A is the rhodopsin-like group, encompassing most GPCRs.

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    Ligand binding sites

    Low-molecular-mass ligands (amines, nucleotides, eicosanoids) bind to sites within the hydrophobic core of GPCRs. Peptide and glycoprotein hormones bind to sites on the exterior face of the receptor.

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    GPCR signaling pathway

    The process starts with a ligand binding to a GPCR, activating the receptor, which then interacts with a G protein. The activated G protein triggers the activation of downstream effectors, leading to a cellular response.

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    GPCR importance

    GPCRs are crucial for transmitting signals from various stimuli in the body. They are targeted by a significant proportion of approved drugs, playing a major role in drug development.

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    Calcium sensors and metabotropic receptors

    These GPCRs include receptors for calcium ions (Ca2+), glutamate, and GABAB. They have large N-terminal extensions where ligands bind.

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    GPCR basal activity

    Some GPCRs exhibit a low level of activity even in the absence of an agonist. This is called basal activity.

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    GPCR desensitization

    The process by which GPCRs become less responsive to stimulation after prolonged exposure to an agonist. This can occur through internalization of the receptor or by phosphorylation of the receptor.

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    LOF mutations

    Loss-of-function mutations are genetic changes that impair the normal function of a protein, including GPCRs.

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    How LOF mutations affect GPCR basal activity

    Some LOF mutations specifically affect the basal activity of GPCRs, either reducing or eliminating it.

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    How LOF mutations affect GPCR structure

    Some LOF mutations affect the overall structure of the GPCR, preventing it from reaching the cell membrane.

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    LOF mutations and interacting proteins

    Some LOF mutations disrupt the function of interacting proteins that are necessary for GPCR trafficking to the cell membrane.

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    Phosphorylation

    Adding a phosphate group to a protein. This happens primarily on serine, threonine, or tyrosine residues. It's crucial for various cellular processes like cell growth and signal transduction.

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    Glycosylation

    Adding a sugar molecule (carbohydrate) to a protein. This occurs mainly on asparagine, hydroxylysine, serine, or threonine residues. It influences protein folding, stability, and activity.

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    Lipidation

    Adding a lipid molecule to a protein. This process helps anchor proteins to membranes, allowing them to be localized to specific cellular compartments.

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    Ubiquitination

    Adding a small protein called ubiquitin to a protein. This acts like a 'death tag' for the protein, marking it for destruction.

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    Constitutive Activity

    The level of signaling activity a GPCR exhibits even when its ligand (the signal molecule) isn't bound. It's like the receptor's internal 'chatter'.

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    Loss-of-Function (LOF) Mutations

    Mutations in GPCRs that prevent them from functioning properly. They may interfere with G-protein binding or signaling.

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    Gain-of-Function (GOF) Mutations

    Mutations that enhance GPCR activity, making them either more sensitive to their natural ligand or activated by other molecules.

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    Biased Agonism

    When a ligand (signaling molecule) activates one pathway but not another within GPCRs. It's like a 'selective' signal, affecting specific parts.

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    G-Proteins

    Proteins that act as molecular switches, turning on or off signaling pathways within the cell. They bind to GTP or GDP, changing their shape and activity.

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    GTP/GDP Binding

    G-proteins bind to either GTP (active form) or GDP (inactive form). This binding cycle regulates their activity.

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    Heterotrimeric G-Proteins

    G-proteins are composed of three subunits (alpha, beta, and gamma) that work together.

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    GPCR/Gαs

    A specific combination of a G-protein-coupled receptor (GPCR) and the stimulatory alpha subunit (Gαs). This complex activates adenylyl cyclase, leading to the production of cAMP.

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    GPCR/Gαq

    A specific combination of a GPCR and the alpha subunit (Gαq). This complex activates phospholipase C (PLC), leading to the production of IP3 and DAG.

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    RGSs

    Regulators of G-protein Signaling. These proteins promote the hydrolysis of GTP into GDP, turning off the activity of the G-protein.

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    Cholera toxin

    A bacterial toxin that modifies the alpha subunit (Gαs) of the G-protein, leading to its permanent activation, resulting in high levels of cAMP.

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    Study Notes

    G-Protein Coupled Receptors (GPCRs)

    • GPCRs are a large family of transmembrane receptors.
    • They are responsible for enabling cells to respond to their surroundings.
    • They have seven transmembrane helices (7TMR).
    • They are also known as hepta-helical receptors or serpentine receptors.

    Learning Objectives

    • Introduce the basic aspects of GPCRs, including classification and structure.
    • Introduce G-proteins and their characteristics.
    • Introduce the effect of post-translational modifications on protein action, particularly the GPCR.

    Lecture Outline

    • Part 1: GPCR general qualities and classes
    • Part 2: G-proteins
    • Part 3: Post-translational modifications

    Part 1: GPCR General Features and Classes

    • GPCRs are seven transmembrane receptors (7TMR).
    • These receptors include hepta-helical and serpentine receptors.

    Nobel Prize (2012)

    • Robert J. Lefkowitz and Brian K. Kobilka were awarded the Nobel Prize in Chemistry.
    • Their work characterized G-protein-coupled receptors (GPCRs).

    Historical Context

    • 1968: Lefkowitz used radiolabelled hormones to identify receptors.
    • 1980: Lefkowitz and colleagues proposed the widely accepted 'ternary complex model' for receptor activation.
    • 1986: Lefkowitz, Kobilka and co-workers cloned the ẞ2-adrenergic receptor, revealing its transmembrane structure.
    • 2011: Kobilka and colleagues solved the crystal structure of the β2-adrenergic receptor in complex with an activating ligand and a G protein.

    7TM Superfamily of GPCRs

    • Includes the β2-adrenergic receptor.
    • Has phosphorylation sites for PKA and GRK2 (β2-adrenergic receptor kinase).

    7TM Superfamily of GPCR (Detailed View)

    • Adrenaline molecule binds between membrane-spanning sections.
    • N-terminal domain is glycosylated.
    • Catechol hydroxyls of adrenaline interact with serine residues in the membrane-spanning α-helix E.

    GPCR Special Features

    • Seven transmembrane domains with highly conserved α helices.
    • Three extracellular loops (ELs).
    • Three or four intracellular loops (ILs).
    • S-bridge between extracellular loops 1 and 2.
    • Consensus sequences, such as Aspartate-Arginine-Tyrosine (DRY).
    • DRY motif is key for inactive to active receptor conformation switching.
    • In the absence of the DRY motif, receptors are constitutively active.

    Active vs. Inactive Conformations

    • GPCR activation likely involves the separation of the third transmembrane (TM-III) and TM-VI domains and a twist in TM-VI.
    • These changes potentially lead to GPCR-G-protein interactions along the intracellular loop 3 (IL3).

    GPCR Superfamily

    • The largest known receptor family.
    • Includes around 800-950 genes and contributes over 1% of the human genome.
    • Receptors for diverse molecules, including neurotransmitters, odorants, lipids, neuropeptides, and large glycoprotein hormones.
    • A target for a significant portion (40%-50%) of best-selling drugs.

    Main GPCR Subfamilies

    • GPCRs are grouped into six major subfamilies/classes.
    • Rhodopsin-like receptors (Class A).
    • Glucagon-like receptors (Class B).
    • Metabotropic glutamate and GABAB receptor family (Class C).
    • Subfamilies grouped by >20% sequence homology.

    Ligands-GPCR Binding (Low-molecular mass)

    • Binding of low-molecular-mass ligands, such as amines, nucleotides, and eicosanoids.
    • These ligands bind to sites within the hydrophobic core.

    Ligands-GPCR Binding (Peptides)

    • Binding of peptide hormones (40-100 kDa).
    • Peptide ligands are accommodated on the exterior face of the receptor.

    Ligands-GPCR Binding (Glycoprotein Hormones)

    • Binding of glycoprotein hormones like TSH, LH, and FSH.
    • Protein ligands are accommodated outside the receptor.

    Ligands-GPCR Binding (Calcium Sensors)

    • Calcium sensors and metabotropic receptors (Ca2+, Glutamate, GABAB).
    • Binding to large N-terminal extensions induces a conformational change.
    • These receptors affect the extension, and then the receptor.

    Ligands-GPCR Binding (Proteinase-Activated Receptors)

    • Proteinase activated receptors (PARs).
    • Cleaved; newly exposed N-terminus acts as an auto-ligand.
    • Freed peptide may also separately interact with another receptor.

    Life Cycle of a Wild-Type GPCR

    • GPCR synthesis in the RER.
    • An interacting protein guides some GPCRs to the plasma membrane.
    • GPCRs may be silent, or display basal activity.
    • Agonist binding activates G-protein and arrestin-dependent effects .
    • Receptor desensitization and internalization occurs.

    Loss-of-Function (LOF) Mutations

    • Specific LOF mutations may only affect basal activity.
    • LOF mutations may lead to constitutive desensitization.
    • Classic LOF mutations affect gross protein structure; receptors are trapped in the RER.

    Loss-of-Function (LOF) Mutations (Continued)

    • Other LOF mutations may interfere with interactions with interacting proteins or with agonist binding.
    • LOF mutations may interrupt intramolecular activation.
    • Other LOF mutations may interfere with the ability to bind to G proteins.

    Gain-of-Function (GOF) Mutations

    • Wild-type GPCRs might display very different levels of constitutive activity.
    • Some GOF mutations may increase receptor sensitivity to the normal agonist with minimal basal activity change.
    • Other GOF mutations may cause a receptor to be sensitive to normally inert positive allosteric modulators.
    • This leads to an increase in sensitivity to the normal agonist.

    GPCRs and Diverse Ligands

    • GPCRs are activated by a wide range of ligands including proteins, peptides, lipids, nucleosides, nucleotides, ions, biogenic amines, amino acids, and dicarboxylic acids.

    G-protein Coupled Receptor Signaling

    • G-proteins are coupled to receptors and enzymes.
    • G-proteins act as a bridge between GPCRs and effectors.
    • They consist of α, β, and γ subunits.

    G-protein α Subunit

    • α and γ subunits are attached to the plasma membrane by lipid anchors.
    • α can bind either GDP or GTP; the bound nucleotide determines its activity status.
    • When GDP is bound, the G-protein is inactive.

    G-proteins, Effectors, and Regulation

    • G-proteins affect effector systems by promoting or decreasing activity in response to stimuli.
    • G-proteins have GTPase activity; regulation is via RGSs and GEFs.

    Methods to Study G-proteins

    • Cholera toxin (CTX) sensitivity test.
    • Pertussis toxin (PTX) sensitivity test.

    Other Topics (Part 3)

    • Post-translational modifications (PTMs): Chemical modifications of proteins that occur after translation; significant role in proteomics.
    • Types of PTMs: Phosphorylation, glycosylation, lipidation, ubiquitination, S-nitrosylation, methylation, N-acetylation, proteolysis

    Phosphorylation

    • Addition of a phosphate group to a protein, primarily on serine, threonine, or tyrosine residues.
    • Plays a crucial role in cell cycle, growth, apoptosis, and signaling pathways.

    Glycosylation

    • Addition of a glycosyl group (carbohydrate) to a protein.
    • This primarily occurs on asparagine, hydroxylysine, serine, or threonine residues.
    • Important in folding, conformation, and protein function.

    Lipidation

    • Proteins are targeted to membranes, like the endoplasmic reticulum, Golgi apparatus, mitochondria, and plasma membrane.
    • Addition of lipid anchors (e.g., farnesyl or geranylgeranyl group on Cys residues).

    Ubiquitination

    • Small regulatory protein (ubiquitin) can be attached to and label proteins for destruction.
    • This affects cell cycle regulation, DNA repair, apoptosis, immune processes, and organelle biogenesis.

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