Glycolysis Lecture Notes PDF

Glycolysis Professor Shivananda Nayak Professor of Biochemistry Dr S Nayak 1 Objectives The student should be able to:  Describe aerobic and anaerobic glycolysis  Explain the importance, the fate of the products and important intermediates of aerobic and anaerobic glycolysis  Explain the regulati...

Glycolysis Professor Shivananda Nayak Professor of Biochemistry Dr S Nayak 1 Objectives The student should be able to:  Describe aerobic and anaerobic glycolysis  Explain the importance, the fate of the products and important intermediates of aerobic and anaerobic glycolysis  Explain the regulation of glycolysis Dr S Nayak 2 CARBOHYDRATE METABOLISM Glucose speaks: “I burn myself to provide fuel to life! Generated through gluconeogenesis by my friends; Engaged in the synthesis of lipids, amino acids; Deranged in my duties due to diabetes mellitus.” Glycolysis: Degradation of glucose to pyruvate (Lactate under anaerobic) generates 7 ATP. Citric acid cycle: The oxidation of acetyl CoA to CO2 Gluconeogenesis: The synthesis of glucose from non-carbohydrate precursors (amino acids, glycerol etc) Glycogenesis: The synthesis of glycogen from glucose Dr S Nayak 3 Glycogenolysis; breakdown of glycogen to glucose and then to lactate or pyruvate. Hexose monophosphate shunt: alternative pathway to glycolysis and TCA cycle for the oxidation of glucose. Here the glucose is directly oxidised to CO2 and H2O. Dr S Nayak 4 GLYCOLYSIS (Embden Meyerhof pathway) Carbohydrates are the important energy source of the body. Glucose is the preferred source of energy for most of the body tissues. Brain cells derive energy mainly from glucose Pyruvate is the end product of aerobic glycolysis Lactate is the end product of anaerobic glycolysis Site: Cytoplasm Importance of the pathway Takes place in all the cells of the body Source of energy in erythrocytes Anaerobic glycolysis forms the major source of energy for muscle during exercise Dr S Nayak 5 Provide carbon skeletons for the synthesis of nonessential amino acids. Most of the reactions of glycolysis are reversible The entry of glucose from ECF to cell (ICF) is under the control of insulin Glycolysis occurrence is the pre-requisite for the aerobic oxidation of carbohydrates Aerobic oxidation takes place in the cells possessing mitochondria. Glycolysis is the major pathway for ATP synthesis in tissues lacking mitochondria (erythrocytes) Dr S Nayak 6 Dr S Nayak 7 Dr S Nayak 8 Steps of Glycolysis 1. Irreversible Glucokinase a.Present in liver b.Phosphorylation of Glu c.Low affinity for glucose d.Not inhibited by Glucose 6–P Hexokinase Present in all tissues Phosphorylation of hexoses High affinity for substrates Inhibited by glucose 6- P Glucose 6-P: Impermeable to the cell membrane. Central molecule with a variety of metabolic fates; glycolysis, glycogenesis, gluconeogenesis and HMP shunt. 2. Reversible reaction 3. PFK is an allosteric inducible key enzyme and the reaction is irreversible Dr S Nayak 9 4. Reversible, 6-carbon compound split into two 3 carbon compounds by aldolase Both are reversibly convertible by an isomerase enzyme. Two molecules of glyceraldehyde 3-phospahte are obtained from a molecule of glucose. Bromohydroxyacetone-phosphate can inhibit isomerase 5. Reversible,end product contains a high-energy bond. Iodoacetate and arsenite non-competitively Glyceraldehyde 3-Phosphate dehydrogenase inhibit 6. The high energy of 1,3 bisphosphoglycerate is trapped to synthesise one ATP molecule Dr S Nayak 10 7. Reversible reaction 8. Reversible reaction, Mg2+ act as activator Fluoride can irreversibly inhibit enolase with the removal of Mg2+ 9. High energy of Phosphoenolpyruvate is trapped into ATP by the pyruvate kinase, irreversible reaction. Ends with pyruvate in the tissues with mitochondria (aerobic) 10. If anaerobic conditions prevail, the reoxidation of NADH formed in reaction 5 is by transfer of reducing equivalents through respiratory chain to oxygen is prevented and get reoxidised by conversion of pyruvate to lactate by LDH Tissues that function under hypoxic conditions produce lactate e.g. Skeletal muscle, smooth muscle and erythrocytes Dr S Nayak 11 Steps 5 and 10 are coupled Glycolysis is the major source of energy in anaerobiosis For smooth operation of the pathway NADH is to be reconverted to NAD+. Formation of lactate allows the regeneration of NAD+ NAD+ reused by glyceraldehyde 3-P Dh. Glycolysis proceeds even in the absence of oxygen to supply ATP. Fate of pyruvate depends on the presence or absence oxygen in the cells. The occurrence of un-interrupted glycolysis is very important in skeletal muscle during strenuous exercise. Brain, retina, renal medulla and GI tract derive their energy from glycolysis. Glycolysis in the erythrocytes leads to lactate production Dr S Nayak 12 Energetics of glycolysis: Energy consuming steps are 1 and 3 Hexokinase and phosphofructokinase catalysed reactions = - 2 ATP Energy yielding steps are: Step 5 Catalysed by Glyceraldehyde –3-PDH Oxidative phosphorylation:NADH x 2 = 2.5 ATP x 2 = 5 ATP Substrate level phosphorylation Steps 6 and 9 Catalysed by Phosphoglycerate kinase & Pyruvate kinase 2ATP x 2 = 4 ATP Total ATP in aerobic glycolysis = 9 ATP – 2 ATP = 7 ATP/ glucose Anaerobic glycolysis: 1 and 3 = 2 ATP used Steps 6 and 9 2 ATP x 2 = 4–2 = 2 ATP Dr S Nayak 13 Shuttle pathways: If the cytosolic NADH uses malate-aspartate shuttle, 3 ATP are produced. If it uses Glycerol phosphate shuttle produces 2 ATP. Regulation Insulin favours glycolysis by activating key glycolytic enzymes like glucokinase, phosphofructokinase(PFK) & pyruvate kinase Glucose–6 P, inhibits hexokinase. This enzyme prevents the accumulation of glucose 6-phosphate. Dr S Nayak 14 PFK-1 is an inducible enzyme that increases its synthesis in response to insulin and decreases in response to glucagon Pyruvate kinase is an inducible enzyme that increases its synthesis in response to insulin and decreases in response to glucagon Dr S Nayak 15 Role of Fructose 2, 6-bisphosphate and regulation of PFK2 F 2,6 BP is the regulatory factor for controlling PFK and then glycolysis in the liver. The function of synthesis and degradation of Fructose 2, 6-BP is brought out by a single enzyme (with two active sites), which is referred to as bi-functional or Tandem enzyme. The activity of these enzymes is controlled by covalent modification. cAMP phosphorylate the tandem enzyme, which results in the inactivation of PFK2 and activation of Fructose 2,6-bisphosphatase 16 Dr S Nayak Regulation by PFK-2 Low blood glucose: PFK2 inactive and F 2,6 BP active (cAMP dependent phosphorylation ) High blood glucose: PFK2 active and F 2,6 BP inactive (dephosphrylation) There will be no stimulation when Fru-2, 6 bisphosphate decreases, with low glucose the PFK1 remains inactive. Dr S Nayak 17 Pasteur effect The inhibition of glycolysis by oxygen When anaerobic yeast exposed to air, the glucose utilisation decreases. In the aerobic condition the levels of glycolytic intermediates from fructose 1, 6 bisphosphate onwards decreases while the earlier intermediates accumulate. The Pasteur effect is due to the inhibition of PFK. Citrate and ATP inhibition explains the Pasteur effect. Dr S Nayak 18 Rapoport Luebering shunt (BPG Shunt) Dr S Nayak 19  The kinase reaction is bypassed in the erythrocytes  No energy is trapped from 2, 3 BPG  The BPG when combines with Hb, reduces the affinity of Hb towards oxygen. In the presence of 2, 3 BPG oxyhemoglobin unload oxygen more easily in tissues  Therefore the 2, 3 BPG increases in hypoxic condition 15 to 25% of the lactate formed goes through this pathway  In hexokinase deficiency phosphorylation does not takes place further. So 2,3 BPG decreases. Then affinity to hemoglobin increases Dr S Nayak 20 Fate of pyruvate Under aerobic condition pyruvate is transported into mitochondria via pyruvate transporter Pyruvate dehydrogenase Complex Pyruvate Acetyl CoA NAD+ NADH+ H+ TPP, FAD, Lipoic acid, CoASH Lack of TPP leads to accumulation of pyruvate In thiamine deficient alcoholics, pyruvate converted to lactate and it leads to lactic acidosis Lactic acidosis is caused by: Inherited deficiency of PDH Inability to reoxidise NADH in the electron transport chain Excessive NADH production, e.g., ethanol intoxication Pyruvate dehydrogenase inhibited by arsenic and Dr S Nayak 21 mercuric ions Ref: Essentials of Biochemistry, Dr S Nayak Dr S Nayak 22