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Watson and Crick's DNA Replication

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What is the role of reverse transcriptase in the replication of RNA viruses that replicate their RNA via a DNA intermediate?

It transcribes the RNA template into a complementary cDNA strand to form a DNA:RNA hybrid and has three enzyme activities: RNA-directed DNA polymerase, RNase H, and DNA-directed DNA polymerase.

What is the function of the primer in the reverse transcription process?

The primer is a specific tRNA molecule captured from the host cell that initiates the synthesis of cDNA.

How does the RNase H activity of reverse transcriptase contribute to the replication of RNA viruses?

It degrades the RNA chain in DNA:RNA hybrids, allowing the completion of DNA synthesis.

What is the final product of the reverse transcription process in retroviruses?

A DNA duplex that directs the remainder of the viral infection process.

What is the difference between RNA-directed DNA polymerase and DNA-directed DNA polymerase activities of reverse transcriptase?

RNA-directed DNA polymerase synthesizes DNA from an RNA template, while DNA-directed DNA polymerase replicates the ssDNA remaining after RNase H degradation of the viral genome.

How do retroviruses replicate their RNA genome?

Through a DNA intermediate, using reverse transcriptase to transcribe the RNA template into a complementary cDNA strand.

What is the role of the tRNA primer in the initiation of DNA synthesis during reverse transcription?

It provides a free 3' hydroxyl group that serves as the initiation site for DNA synthesis.

What are the three enzyme activities of reverse transcriptase?

RNA-directed DNA polymerase, RNase H, and DNA-directed DNA polymerase.

What is the function of the DNA-directed DNA polymerase activity of reverse transcriptase?

It replicates the ssDNA remaining after RNase H degradation of the viral genome, yielding a DNA duplex.

Why are RNA viruses that replicate their RNA via a DNA intermediate termed retroviruses?

Because they use reverse transcriptase to transcribe their RNA genome into DNA.

What is the significance of the DNA:RNA hybrid formed during reverse transcription?

The DNA:RNA hybrid formed during reverse transcription is a crucial intermediate that allows for the synthesis of a complementary DNA strand from the RNA template.

How does the RNA-directed DNA polymerase activity of reverse transcriptase contribute to the generation of protein diversity?

The RNA-directed DNA polymerase activity of reverse transcriptase allows for the synthesis of a DNA strand from an RNA template, which can lead to genetic recombination and increased protein diversity.

What is the role of the host cell in the replication of RNA viruses?

The host cell provides a specific tRNA molecule that serves as a primer for reverse transcriptase, allowing for the initiation of DNA synthesis.

How does the RNase H activity of reverse transcriptase contribute to the formation of a DNA duplex?

The RNase H activity of reverse transcriptase degrades the RNA chain in the DNA:RNA hybrid, allowing for the formation of a DNA duplex.

What is the significance of the DNA duplex formed during reverse transcription?

The DNA duplex formed during reverse transcription serves as a template for the remainder of the viral infection process.

How does reverse transcription allow for the generation of genetic diversity in RNA viruses?

Reverse transcription allows for the generation of genetic diversity in RNA viruses by introducing errors during the synthesis of DNA from RNA.

What is the advantage of using a DNA intermediate in the replication of RNA viruses?

The use of a DNA intermediate in the replication of RNA viruses provides a more stable and durable genetic material that can be replicated and transmitted more efficiently.

How does the replication of RNA viruses that use a DNA intermediate differ from those that do not?

RNA viruses that use a DNA intermediate, such as retroviruses, replicate their RNA genome through a DNA intermediate, whereas those that do not, replicate their RNA genome directly.

What is the significance of the reverse transcription process in the life cycle of RNA viruses?

The reverse transcription process is essential for the replication of RNA viruses that use a DNA intermediate, as it allows for the synthesis of DNA from RNA.

How does the primer for reverse transcriptase contribute to the specificity of DNA synthesis?

The primer for reverse transcriptase, a specific tRNA molecule, contributes to the specificity of DNA synthesis by ensuring that DNA synthesis initiates at a specific site on the RNA template.

What is the significance of using a specific tRNA molecule as a primer in the initiation of DNA synthesis during reverse transcription?

The specific tRNA molecule serves as a primer for DNA synthesis, ensuring that DNA synthesis is initiated at a specific site, allowing for accurate and efficient replication of the viral genome.

How does the RNA-directed DNA polymerase activity of reverse transcriptase contribute to the formation of a DNA:RNA hybrid?

The RNA-directed DNA polymerase activity of reverse transcriptase transcribes the RNA template into a complementary cDNA strand, forming a DNA:RNA hybrid.

What is the role of the DNA-directed DNA polymerase activity of reverse transcriptase in the replication of RNA viruses?

The DNA-directed DNA polymerase activity of reverse transcriptase replicates the ssDNA remaining after RNase H degradation of the viral genome, yielding a DNA duplex.

Why do RNA viruses that replicate their RNA via a DNA intermediate require a unique enzyme, reverse transcriptase?

RNA viruses that replicate their RNA via a DNA intermediate require reverse transcriptase because it can transcribe RNA into DNA, which is necessary for their replication.

What is the advantage of having a DNA intermediate in the replication of RNA viruses?

The DNA intermediate serves as a stable template for the synthesis of new viral RNA, ensuring accurate and efficient replication of the viral genome.

How does the RNase H activity of reverse transcriptase contribute to the degradation of the viral genome during reverse transcription?

The RNase H activity of reverse transcriptase degrades the RNA chain in the DNA:RNA hybrid, allowing for the formation of a double-stranded DNA duplex.

What is the significance of the specific base pairing postulated by Watson and Crick in the context of DNA replication?

The specific base pairing immediately suggests a possible copying mechanism for the genetic material.

What is the difference between unidirectional and bidirectional DNA replication?

Bidirectional replication involves two replication forks, which move in opposite directions, whereas unidirectional replication involves a single replication fork.

What is the role of DNA helicases and gyrases in DNA replication?

They overcome supercoiling, which is necessary for DNA replication to occur.

What is the difference between the leading strand and the lagging strand in DNA replication?

The leading strand is formed continuously, while the lagging strand is formed from Okazaki fragments.

What is the significance of the semidiscontinuous model of DNA replication?

It describes the process of DNA replication, where the leading strand is formed continuously, and the lagging strand is formed from Okazaki fragments.

What is the characteristic of DNA replication that makes it 'semiconservative'?

One of the two original strands is conserved in each progeny molecule.

What is the reason why AZT and 3TC inhibit the replication of HIV?

Because they lack a 3'-OH group, preventing further chain elongation.

Why is it difficult to devise an effective vaccine against HIV?

Due to the high error rate of HIV reverse transcriptase, making the virus ever-changing.

What is the function of phosphorylation in the in vitro and in vivo processes of AZT and 3TC?

To form deoxynucleoside-5'-triphosphate substrate analogs for HIV reverse transcriptase.

How do AZT and 3TC get incorporated into growing DNA chains?

They are incorporated in place of dTMP (in the case of AZT) or dCMP (in the case of 3TC).

What is the significance of the structure of AZT and 3TC in inhibiting HIV replication?

Their structures allow them to be incorporated into growing DNA chains, blocking further DNA synthesis.

What is the consequence of incorporating AZT and 3TC into growing DNA chains?

It blocks further chain elongation due to the lack of a 3'-OH group.

What is the significance of nicks at W and E in the context of recombinant heteroduplexes?

Nicks at W and E yield patch recombinant heteroduplexes.

What is the major discovery made by Barbara McClintock in the 1950s?

Activator genes can cause mutations in other genes and can move about the genome.

What is the purpose of genetic recombination as it relates to generating protein diversity?

Genetic recombination can generate protein diversity.

How are the ends of chromosomes replicated?

The process of replicating the ends of chromosomes is not explicitly stated in the provided text.

What is the primary function of DNA polymerases?

The function of DNA polymerases is not explicitly stated in the provided text.

What is the role of DNA repair mechanisms in maintaining genome stability?

The role of DNA repair mechanisms is not explicitly stated in the provided text.

What is the process called when genetic information is rearranged to create new associations?

Genetic recombination

What is the term for the enzymatic insertion of a transposon, a mobile segment of DNA?

Transposition

What is the experiment that demonstrated the exchange of DNA segments during recombination?

Meselson and Weigle's experiment

What is the process that requires the breakage and reunion of DNA strands?

General recombination

What type of recombination involves similar DNA sequences?

Homologous recombination

What is the term for recombination involving very different nucleotide sequences?

Nonhomologous recombination

What is the significance of the semiconservative model of DNA replication in the context of genetic information transmission?

The semiconservative model ensures that each new DNA molecule contains one old strand and one new strand, allowing for the transmission of genetic information from one generation to the next.

How does the bidirectional replication mechanism overcome the problem of supercoiling during DNA replication?

The bidirectional replication mechanism involves two replication forks that move in opposite directions, allowing for the simultaneous unwinding and rewinding of DNA, thus overcoming supercoiling.

What is the role of Okazaki fragments in the semidiscontinuous model of DNA replication?

Okazaki fragments are short, discontinuously synthesized DNA segments that are formed on the lagging strand during DNA replication.

What is the significance of the specific base pairing postulated by Watson and Crick in the context of DNA replication?

The specific base pairing (A-T and G-C) allows for the complementarity of DNA strands, enabling the formation of a double helix and the transmission of genetic information.

How does the process of DNA replication ensure the accuracy of genetic information transmission?

DNA replication involves the synthesis of new strands that are complementary to the original template strands, ensuring the accuracy of genetic information transmission through the correction of errors by proofreading and editing mechanisms.

What is the consequence of the discontinuous synthesis of DNA on the lagging strand during DNA replication?

The discontinuous synthesis of DNA on the lagging strand results in the formation of Okazaki fragments, which are later joined together to form a continuous strand.

What is the significance of reverse transcriptase in the replication of RNA viruses that use a DNA intermediate?

Reverse transcriptase is necessary for the replication of RNA viruses that use a DNA intermediate, as it converts the RNA genome into a DNA molecule that can be integrated into the host cell's genome.

How does the RNase H activity of reverse transcriptase contribute to the replication of RNA viruses?

The RNase H activity of reverse transcriptase degrades the RNA template strand in the DNA:RNA hybrid, allowing the formation of a double-stranded DNA molecule.

What is the role of the specific tRNA molecule used as a primer in the initiation of DNA synthesis during reverse transcription?

The specific tRNA molecule serves as a primer for DNA synthesis, allowing the initiation of reverse transcription and the conversion of the RNA genome into a DNA molecule.

What is the significance of the DNA duplex formed during reverse transcription?

The DNA duplex formed during reverse transcription is the template for the remainder of the viral infection process, allowing the integration of the viral genome into the host cell's genome.

How does the DNA-directed DNA polymerase activity of reverse transcriptase contribute to the replication of RNA viruses?

The DNA-directed DNA polymerase activity of reverse transcriptase replicates the single-stranded DNA molecule formed during reverse transcription, resulting in a double-stranded DNA molecule that can be integrated into the host cell's genome.

What is the significance of nicks at N and S in the context of recombinant heteroduplexes?

Nicks at N and S yield splice recombinant heteroduplexes.

What is the significance of the RNA-directed DNA polymerase activity of reverse transcriptase in the replication of RNA viruses?

The RNA-directed DNA polymerase activity of reverse transcriptase transcribes the RNA template into a complementary DNA strand, forming a DNA:RNA hybrid that is essential for the replication of RNA viruses.

How do transposons contribute to genetic recombination?

Transposons move from place to place in the genome, allowing for recombination of genetic information.

What is the role of genetic recombination in generating protein diversity?

Genetic recombination allows for the rearrangement of genetic information, generating new associations and leading to protein diversity.

What is the process by which genetic information is rearranged to create new associations?

Recombination

What is the significance of Barbara McClintock's 'jumping genes' model?

It showed that activator genes could move about the genome, leading to genetic recombination.

What is the result of nicks at W and E in the context of recombinant heteroduplexes?

Patch recombinant heteroduplexes

What is the underlying process that involves the breakage and reunion of DNA strands, leading to the shuffling of genetic information?

General recombination

What type of recombination involves similar DNA sequences, leading to the exchange of genetic material?

Homologous recombination

What is the term for the enzymatic insertion of a transposon, a mobile segment of DNA, into a new location?

Transposition

What is the process called when genetic information is rearranged to create new associations, such as during homologous recombination?

Genetic recombination

What is the experiment that demonstrated the exchange of DNA segments during recombination, involving 'heavy' and 'light' phage?

Meselson and Weigle's experiment

What type of recombination involves very different nucleotide sequences, leading to the creation of new genetic combinations?

Nonhomologous recombination

How does the incorporation of AZT and 3TC into growing DNA chains affect HIV replication?

The incorporation of AZT and 3TC into growing DNA chains blocks further chain elongation because they lack a 3'-OH where the next incoming dNTP can be added.

What is the significance of the high error rate of HIV reverse transcriptase?

The high error rate of HIV reverse transcriptase makes it difficult to devise an effective vaccine against HIV, as the virus is constantly changing.

How do nucleoside analogs like AZT and 3TC work as HIV reverse transcriptase inhibitors?

Nucleoside analogs like AZT and 3TC work as HIV reverse transcriptase inhibitors by being phosphorylated to form deoxynucleoside-5'-triphosphate substrate analogs, which are then incorporated into growing DNA chains, terminating DNA synthesis.

What is the role of phosphorylation in the in vitro and in vivo processes of AZT and 3TC?

Phosphorylation is necessary for the conversion of AZT and 3TC into their active forms, which can then be incorporated into growing DNA chains and inhibit HIV replication.

What is the significance of the structure of AZT and 3TC in inhibiting HIV replication?

The structure of AZT and 3TC, lacking a 3'-OH group, allows them to be incorporated into growing DNA chains and terminate DNA synthesis, thereby inhibiting HIV replication.

How do HIV reverse transcriptase inhibitors like AZT and 3TC affect the life cycle of HIV?

HIV reverse transcriptase inhibitors like AZT and 3TC block the replication of HIV by terminating DNA synthesis, thereby preventing the virus from replicating.

Discover the famous 1953 discovery of Watson and Crick, where they proposed a copying mechanism for genetic material. Learn about the semiconservative process of DNA replication, involving strand separation and template synthesis. Test your understanding of this crucial biological concept.

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