MIC 115 Lecture 13: Viral Vectors
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Questions and Answers

What is the primary advantage of pseudotyping retroviral vectors with VSV-G?

  • It increases the package size of retroviral RNA.
  • It allows for broader cell type targeting by improving receptor interaction. (correct)
  • It enables integration of the viral DNA into the host genome.
  • It enhances the transgene expression levels in target cells.
  • Which of the following statements is true regarding adenoviral vectors?

  • Adenoviruses remain as episomes within the nucleus. (correct)
  • Adenoviral vectors are typically used for their high transgene expression levels.
  • They are limited to transducing small DNA fragments effectively.
  • Adenoviruses integrate into the host genome.
  • What is a key limitation of retroviral vectors in gene transfer?

  • They cannot transduce DNA fragments larger than 10 kb. (correct)
  • They require specific protein receptors for cell entry.
  • They cannot be used for non-dividing cells.
  • They can only package dsDNA genomes.
  • What is a defining characteristic of adeno-associated viruses (AAVs)?

    <p>They have a small ssDNA genome of 4.7 kb. (C)</p> Signup and view all the answers

    In what scenario would retroviral transduction not be the preferred method?

    <p>When transfecting cells effectively. (A), When using large DNA fragments over 10 kb. (B), When high levels of transgene expression are required. (C)</p> Signup and view all the answers

    What is a primary characteristic that differentiates lentiviruses from retroviruses?

    <p>Lentiviruses can infect both mitotically active and non-dividing cells. (B)</p> Signup and view all the answers

    Which type of viral vector is specifically known for being used in gene delivery without undergoing genomic integration?

    <p>Adeno-associated viral vectors (A), Adenoviral vectors (C)</p> Signup and view all the answers

    Why is it important to use only extensively studied viral vectors for gene therapy?

    <p>To confirm their safety for use in humans. (A)</p> Signup and view all the answers

    What containment level is necessary to perform viral transduction in a laboratory setting?

    <p>BSL-2 (C)</p> Signup and view all the answers

    What is the primary role of viral vectors in gene therapy?

    <p>To deliver DNA or RNA directly into cells. (B)</p> Signup and view all the answers

    What type of genetic material do adenoviruses carry?

    <p>Double-stranded DNA (C)</p> Signup and view all the answers

    From which component does the ability of retroviral vectors to integrate into the host genome primarily arise?

    <p>The presence of integrase enzymes. (B)</p> Signup and view all the answers

    Which statement about adeno-associated viruses is accurate?

    <p>They have a single-stranded DNA genome and are generally small. (C)</p> Signup and view all the answers

    What is the primary requirement for the integration process of proviral DNA?

    <p>Presence of LTRs (A)</p> Signup and view all the answers

    Why do most retroviruses require mitosis for productive infection?

    <p>Because the pre-integration complex cannot pass through nuclear pores (A)</p> Signup and view all the answers

    What role does the y sequence play in the lentiviral packaging system?

    <p>It is essential for viral particle packaging (A)</p> Signup and view all the answers

    What is the primary outcome of transduction in retroviral vectors?

    <p>The insertion of DNA into the host genome (D)</p> Signup and view all the answers

    What happens if the y sequence is moved from the transfer plasmid to other plasmids?

    <p>Transgenes cannot be packaged (A)</p> Signup and view all the answers

    Which gene in the retroviral genome is primarily responsible for reverse transcription?

    <p>POL gene (D)</p> Signup and view all the answers

    Which viral genes are typically removed to create replication-incompetent viral vectors?

    <p>All genes related to virulence (B)</p> Signup and view all the answers

    What is a distinguishing factor between stable transfection and transient transfection when using retroviral vectors?

    <p>Stable transfection results in longer-lasting gene expression (D)</p> Signup and view all the answers

    What role does the LTR sequence serve in the retroviral genome?

    <p>Facilitates the integration of proviral DNA (A)</p> Signup and view all the answers

    What characterizes the life cycle of retroviruses?

    <p>Integration into a host genome (D)</p> Signup and view all the answers

    Which of the following components is supplied through separate plasmids in the Recombinant Lentiviral Packaging System?

    <p>Viral structural proteins (B)</p> Signup and view all the answers

    What is the function of the packaging signal (y) in retroviruses?

    <p>It is required for viral packaging (B)</p> Signup and view all the answers

    What is the primary function of lentiviral vectors in gene therapy?

    <p>To introduce recombinant DNA into vertebrate cells (D)</p> Signup and view all the answers

    What determines the viral tropism of retroviruses?

    <p>The interaction between envelope glycoprotein and host receptors (B)</p> Signup and view all the answers

    What percentage of the human genome is estimated to consist of endogenous retroviruses?

    <p>5% (C)</p> Signup and view all the answers

    Which structural component encapsulates the core of the retrovirus?

    <p>Nucleocapsid (D)</p> Signup and view all the answers

    Flashcards

    Viral vectors

    Vehicles that deliver DNA or RNA directly into cells, often developed from viruses with all harmful genes removed.

    Retrovirus/Lentivirus

    Retroviruses with single-stranded RNA genomes that integrate into the host genome. Lentiviruses can infect non-dividing cells.

    Retroviral life cycle

    Involves converting RNA to DNA, integrating into host DNA, and making new viruses.

    Adenoviral vectors

    Use double-stranded DNA, do not integrate into the host genome. They are large.

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    Adeno-associated viral vectors

    Have single-stranded DNA genomes, small size, and do not integrate into the host genome.

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    Gene delivery

    The process of introducing genetic material into cells using vectors or carrier molecules.

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    Gene therapy

    Using genetic material to treat diseases.

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    Lentivirus characteristics

    A type of retrovirus that can infect non-dividing cells, known for long incubation periods and potentially chronic diseases.

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    What is transduction?

    The process of inserting DNA into a host genome as a provirus, usually by a viral vector.

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    What are retroviral vectors?

    Modified viruses that use their own integration machinery to stably insert genes into a host chromosome.

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    Why are retroviral vectors useful?

    They can efficiently and stably integrate genes into cells that are difficult to directly transfect.

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    What's the function of the Long Terminal Repeats (LTRs) in retroviral genomes?

    LTRs are essential for integration of proviral DNA and initiating viral RNA synthesis.

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    What is the purpose of the 'y' (psi) sequence in the retroviral genome?

    It ensures proper packaging of the viral genome into new viral particles.

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    What does the GAG gene encode?

    The GAG gene encodes structural proteins that form the nucleocapsid, the core of the virion.

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    What does the POL gene encode?

    The POL gene encodes reverse transcriptase, an enzyme crucial for converting viral RNA into DNA.

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    What does the ENV gene encode?

    The ENV gene encodes glycoproteins that embed within the viral membrane, allowing attachment to host cells.

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    Integration of Retroviral DNA

    The process where double-stranded proviral DNA randomly integrates into the host cell's genome. This integration is essential for the retrovirus to replicate and spread.

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    LTRs Role in Integration

    Long Terminal Repeats (LTRs) are essential for the integration of retroviral DNA. They act as landing sites for the viral integrase enzyme, which facilitates the insertion of the proviral DNA into the host genome.

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    Mitosis Requirement for Retroviruses

    Many retroviruses need the host cell to undergo mitosis (cell division) to effectively replicate. This is because the pre-integration complex, which contains the viral DNA, cannot get through the nuclear pore (a gateway to the nucleus) during the cell's resting phase.

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    Lentiviruses: Infecting Both Dividing and Non-Dividing Cells

    Lentiviruses, a specific type of retrovirus, have the ability to infect both dividing and non-dividing cells. They achieve this through viral proteins that actively transport the pre-integration complex into the nucleus.

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    Viral Vectors: Gene Delivery

    Viral vectors are tools used to introduce genetic material (DNA or RNA) into cells. They are derived from viruses, but are modified to be replication-incompetent and safe for use.

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    Replication-Incompetent Viral Vectors

    These vectors are modified versions of viruses where the genes responsible for viral replication have been removed. They can still enter cells and deliver genes, but they cannot make new viruses.

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    Essential Viral Gene Splitting

    To ensure safety, the essential genes for viral protein production (gag, pol, env, rev) are separated into different plasmids. This prevents the production of new infectious viruses from the viral vectors.

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    Ψ (Psi) Packaging Signal: Key for Packaging

    The Ψ sequence is critical for packaging viral DNA into new viral particles. A transfer plasmid containing the gene of interest must have the Ψ sequence to be packaged.

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    VSV-G Pseudotyping

    Replacing the Env glycoprotein of a retroviral vector with the Vesicular Stomatitis Virus Glycoprotein (VSV-G) to broaden the range of cell types the vector can infect.

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    VSV-G Entry Mechanism

    VSV-G interacts with a general phospholipid component of the cell membrane, allowing entry without the need for specific protein receptors.

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    Limitations of Retroviral Vectors

    Retroviral transduction may not be the ideal choice for cells that can be easily transfected or when high transgene expression is needed. They are also limited in the size of DNA they can carry.

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    Adenovirus Genome

    Adenoviruses have a double-stranded DNA genome and remain in the nucleus as an episome (not integrated into the host genome).

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    Adeno-associated Virus (AAV) Genome

    AAV has a small, single-stranded DNA genome, and does not integrate into the host genome.

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    Study Notes

    Viral Vectors Overview

    • Viral vectors are used for gene delivery and gene therapy.
    • Viruses naturally deliver DNA or RNA into cells.
    • Viral vectors are vehicles to deliver DNA or RNA directly into cells.
    • Viral vectors are derived from viruses, but all viral genes are removed and modified to only deliver the desired DNA or RNA.
    • Only extensively studied and determined safe for humans are used.
    • Biosafety level 2 (BSL-2) facility needed for viral transduction in a lab

    Retrovirus and Lentivirus

    • Retroviruses and lentiviruses have single-stranded RNA genomes.
    • Retroviruses integrate into the host genome as proviruses.
    • Retroviral vectors utilize the integration machinery of naturally occurring retroviruses.
    • Retroviruses are used for stable and efficient gene transfer into cells.
    • Lentiviruses can infect non-dividing cells as well as dividing cells.

    Retroviral and Lentiviral Vectors

    • Retroviral vectors are developed using retroviruses, including human immunodeficiency virus (HIV).
    • Retroviral and lentiviral genomes have long terminal repeats (LTRs).
    • LTRs are crucial for integration into host genome and viral replication.
    • The packaging signal sequence (ψ) is required for viral packaging.

    Adenoviral Vectors

    • Adenoviruses have double-stranded DNA genomes.
    • Adenoviruses do not undergo genomic integration.
    • Adenoviruses are large.
    • Adenovirus vectors are widely used for vaccines and in vivo gene therapies.

    Adeno-Associated Viral Vectors (AAV)

    • Adeno-associated viruses have single-stranded DNA genomes.
    • AAVs are small.
    • AAVs do not integrate into the host genome.
    • AAV vectors are stably maintained in non-dividing cells (e.g., liver, nerve cells).
    • AAVs are popular tools for in vivo gene therapies.

    Viral Vector Life Cycle

    • Viral vectors use the host cell's machinery for replication and transgene expression.
    • Retroviruses use reverse transcription to convert RNA to DNA for integration.
    • Viral tropism describes the ability of a virus to infect specific cell types.
    • Integration is the process where viral material combines into the host genome.
    • Retroviruses often require mitosis for effective infection as their integration process relies on cell division.

    Stable Transfection vs. Lentiviral Transduction

    • Stable transfection doesn't involve integration into host genome whereas lentiviral transduction does.
    • The expression pattern for stable transfection differs from lentiviral.
    • Different viral vectors used for diverse applications, considering various factors like stability, integration, and target cells.

    Pseudotyping Retroviral Vectors

    • Retroviral vectors can be modified to target different cell types by replacing the viral envelope protein (Env) with another protein.
    • The Vesicular Stomatitis Virus Glycoprotein (VSV-G) is one common replacement that expands vector cell types which can target cells lacking receptors for the original viral envelope.

    Limitations of Retroviral Vectors

    • Retroviral vectors have limited capacity for carrying large DNA fragments.
    • Retroviruses are most effective in cells capable of division.
    • Retroviral transduction may not be ideal for high transgene expression or efficient transfection.

    Adenovirus and AAV Considerations

    • Adenoviruses and AAVs do not integrate their genetic material into the host genome; hence, the viral DNA resides independently (episome).
    • This characteristic makes them suitable for situations where stable integration is not needed.

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    Description

    This quiz covers the fundamentals of viral vectors, their use in gene therapy, and specific types such as retroviruses and lentiviruses. It explores how these vectors function, their safety considerations, and their application in gene delivery. Test your understanding of these essential tools in modern genetic research.

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