Lodish Ch 14: Vesicular Traffic and Secretion Mechanisms

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Questions and Answers

The discovery of green fluorescent protein (GFP) has greatly facilitated living cell experiments because:

  • GFP requires a jellyfish-specific cofactor.
  • GFP is green.
  • GFP sequences may be readily fused to those of other proteins. (correct)
  • wild-type GFP folding is adapted to normal seawater temperatures, 15-25 °C.

Endoglycosidase D is a useful reagent because it allows scientists to distinguish glycosylated proteins that:

  • remain in the cis-Golgi.
  • remain in the trans-Golgi.
  • get secreted.
  • remain in the ER. (correct)

Yeast sec mutations:

  • invariably affect nonessential genes.
  • affect protein transport into mitochondria but not chloroplasts.
  • all fall into the same complementation class.
  • provide little evidence regarding the mechanism, necessitating other assays or information. (correct)

Cell-free transport assays:

<p>all of the above (D)</p> Signup and view all the answers

The first step in the secretory pathway that should be inhibited by a non-functional mutant of NSF is:

<p>ER to Golgi transport. (A)</p> Signup and view all the answers

Given the wild type (normal) yeast on the left and the mutant yeast on the right, identify the defective phenotype for the mutant.

<p>fusion of transport vesicles from the ER to the Golgi (D)</p> Signup and view all the answers

Vesicle budding recruits proteins that are needed for subsequent:

<p>selective vesicle targeting and fusion. (C)</p> Signup and view all the answers

The presence of clathrin mediates vesicular transport:

<p>trans-Golgi to endosome. (D)</p> Signup and view all the answers

Which of the following small GTPases are NOT involved in vesicle budding or docking?

<p>ras (C)</p> Signup and view all the answers

If Sar1 is inserted into the membrane:

<p>it is bound to GTP and recruits COPII coat proteins. (B)</p> Signup and view all the answers

Proteins that function in the ER will encounter which of the following?

<p>anterograde transport in COPII coated vesicles (A)</p> Signup and view all the answers

What phenotype would be observed in a cell containing a nonhydrolyzable form of ATP with respect to the vesicles of the secretory pathway?

<p>Coated vesicles would accumulate. (C)</p> Signup and view all the answers

COPI coat proteins mediate ______ transport between the Golgi apparatus and other organelles.

<p>retrograde (A)</p> Signup and view all the answers

Which of the following is a forward transport sorting signal acting at the ER?

<p>diacidic amino acid motif within the cytosolic domain (A)</p> Signup and view all the answers

Soluble and membrane proteins advance through the Golgi complex by:

<p>cisternal progression. (D)</p> Signup and view all the answers

Protein sorting of anterograde cargo to different destinations within the Golgi complex occurs in the:

<p>trans-Golgi network. (A)</p> Signup and view all the answers

In hepatocytes, the process by which apically destined proteins travel from the basolateral region across the cell before fusing with the apical membrane is called:

<p>transcytosis. (B)</p> Signup and view all the answers

The mannose 6-phosphate residue is important, as it is required to target soluble enzymes to the lysosome. The two enzymes responsible for attaching this residue onto these soluble enzymes reside in the:

<p>cis-Golgi. (C)</p> Signup and view all the answers

In MDCK cells, which of the following is a sorting signal that allows proteins to be targeted to the apical membrane?

<p>GPI (A)</p> Signup and view all the answers

The LDL receptor is a receptor for:

<p>apolipoprotein B and receptor-mediated endocytosis of LDL. (A)</p> Signup and view all the answers

Lipoproteins are effective in transporting lipid molecules in an aqueous environment because their surface layer is:

<p>amphipathic. (A)</p> Signup and view all the answers

Acidification of endosomes is important in dissociating:

<p>iron from transferrin. (B)</p> Signup and view all the answers

Formation of the late endosome/multivesicular endosome occurs by mechanisms similar to those of:

<p>retrovirus budding from the plasma membrane. (C)</p> Signup and view all the answers

An important molecule for generating fatty acids in the cell enters via receptor-mediated endocytosis. The complex formed between the receptor on the plasma membrane and the important molecule is stable only at neutral pH. Based on this knowledge, you would predict:

<p>both the molecule and the receptor are degraded to release the molecule from the receptor. (A)</p> Signup and view all the answers

The topogenic sequence of transferrin must include:

<p>an internal signal-anchor sequence with positive charges N-terminal to the SA. (B)</p> Signup and view all the answers

Receptor-mediated endocytosis of iron-carrying transferrin results in:

<p>vesicle formation at the plasma membrane mediated by COP proteins. (C)</p> Signup and view all the answers

The mannose 6-phosphate residue is important, as it is required to target soluble enzymes to the lysosome. The two enzymes responsible for attaching this residue onto these soluble enzymes reside in the trans-Golgi.

<p>lysosome; cis-Golgi (A)</p> Signup and view all the answers

Which of the following is TRUE about lysosomes?

<p>They are bound by a single membrane but can engulf organelles containing double membranes. (B)</p> Signup and view all the answers

Flashcards

GFP's value in cell experiments

GFP sequences can be easily fused with other proteins, allowing researchers to track their movement and location within cells.

Endoglycosidase D use

Endoglycosidase D identifies glycosylated proteins remaining in the endoplasmic reticulum (ER).

Yeast sec mutations

Yeast sec mutations often reveal information about secretory pathway mechanisms, but they don't always point to one specific problem/mechanism.

Cell-free transport assays

Cell-free transport assays complement genetic approaches in studying the secretory pathway, often probing protein glycosylation and changes.

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VSV G protein's roles

VSV G protein, particularly the mutant tsO45 G, is useful in studying membrane trafficking due to its temperature-sensitive folding (allows researchers to control folding and tracking) and glycosylation.

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Golgi vesicle direction

Cell-free systems show Golgi enzyme transport to compartments with cargo protein, indicating retrograde vesicle transfer.

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NSF mutant effect

A non-functional NSF mutant inhibits ER to Golgi transport in the secretory pathway.

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Yeast mutant phenotype

The mutant yeast in the image shows a defective fusion of transport vesicles from the ER to the Golgi.

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Vesicle budding function

Vesicle budding recruits proteins for selective vesicle targeting and fusion.

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Clathrin and vesicular transport

Clathrin is involved in trans-Golgi to endosome vesicular transport.

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Small GTPases not in budding/docking

Ras is not involved in vesicle budding or docking (ARF, rab1, and Sar1p are).

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Coat protein recruitment

Small GTPases (like Sar1) recruit specific coat proteins like COPII to parts of the cell.

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SNARE protein's function

SNARE proteins bring vesicles and target membranes together for fusion.

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Sar1 membrane insertion

Sar1 insertion into the membrane activates it to bind GTP and recruit COPII proteins.

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ER protein encounter

ER proteins encounter anterograde transport in COPII coated vesicles to be moved through the cell.

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Nonhydrolyzable ATP affect

A nonhydrolyzable form of ATP causes coated vesicles to accumulate.

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COPI coat protein role

COPI coat proteins mediate retrograde transport between Golgi and other organelles.

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ER forward sorting signal

A diacidic amino acid motif within the cytosolic domain acts as a forward sorting signal within the ER.

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Golgi protein movement

Soluble and membrane proteins move through the Golgi in a process called cisternal progression.

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LDL receptor's target

The LDL receptor binds to apolipoprotein B and mediates receptor-mediated endocytosis of LDL.

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Anterograde cargo sorting

Anterograde cargo sorting to different Golgi destinations occurs in the TGN.

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Lysosome cargo targeting

Proteins to lysosomes are glycosylated in the ER; a specific mannose is phosphorylated, targeted to the lysosome by mannose-6-phosphate.

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Apical membrane sorting signal

The GPI anchor is involved in protein sorting for the apical membrane in MDCK cells.

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Clathrin vesicle pinching

Clathrin-coated vesicles pinch off via a dynamin-mediated process involving a GTPase collar.

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Autophagy

Autophagy is a process where bulk amounts of cytosol or organelles are delivered to lysosomes for degradation.

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Endosome acidification importance

Endosome acidification is important for releasing iron from transferrin, thus allowing iron to be absorbed and used by a cell.

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Study Notes

Vesicular Traffic, Secretion, and Endocytosis

  • GFP (green fluorescent protein) discovery facilitated living cell experiments due to its ability to fuse with other proteins.
  • Endoglycosidase D distinguishes glycosylated proteins that remain in the ER.
  • Yeast sec mutations provide insight into mechanisms but may affect non-essential genes.
  • Cell-free transport assays offer evidence for secretory pathway analysis, assess glycosylation status, and test protein effects.
  • VSV G protein analysis is useful due to its temperature-sensitive folding properties permitting protein synthesis and inhibitor use in experiments.
  • Vesicles' movement direction in VSV G-based systems is determined through isolating and characterizing vesicles.
  • NSF, a protein in the secretory pathway, is implicated in inhibiting ER-to-Golgi transport.
  • Identifying defective phenotype in relation to wild-type yeast.
  • Role of vesicle budding, trafficking, and membrane fusion in the secretory pathway for correct movement of proteins through the system.
  • COPI, COPII proteins, and GTPases' association in vesicle transport in various cellular locations.
  • SNARE proteins' role in membrane fusion; their pairing mechanisms for vesicle and target membrane association.
  • Protein sorting signals and how specific enzymes are targeted to particular locations.
  • Receptor-mediated endocytosis involving proteins in internalizing different molecules.
  • Autophagy process and regulation for cellular cleaning.
  • Role of pH in facilitating protein dissociation for different targets.
  • Sorting signals for proteins targeted to apical membranes in MDCK cells.
  • Clathrin-coated vesicles pinching off through a process mediated by the GTPase Dynamin.
  • LDL receptor and its role in targeting apolipoproteins for cellular use or degradation.
  • Receptor-mediated endocytosis of iron-carrying transferrin for iron release.
  • Importance of mannose 6-phosphate in targeting enzymes to the lysosome.
  • Correctly identifying and understanding the enzymes responsible for mannose 6-phosphate addition to enzymes for transport.
  • Importance of lysosomal enzymes for protein degradation/removal.
  • Processes/molecules involved in transporting proteins to and from the endoplasmic reticulum (ER).

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