Transcription Factors and Gene Regulation
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Questions and Answers

What is the effect of transcription factors binding to enhancers?

  • They have no effect on transcription levels.
  • They reduce the transcription levels.
  • They initiate translation instead of transcription.
  • They increase transcription levels. (correct)

Which statement accurately describes silencers?

  • They are regulatory sequences found solely downstream of genes.
  • They are found within genes only.
  • They are known as repressors and decrease transcription levels. (correct)
  • They increase transcription by recruiting additional transcription factors.

Where can enhancers and silencers be located in relation to a gene?

  • Only within exons of the gene.
  • Only at the transcription site.
  • Upstream, downstream, or within introns of the gene. (correct)
  • Only upstream of the gene.

What is the primary role of transcription factors in the initiation of transcription?

<p>They bind to DNA, forming a transcription initiation complex. (C)</p> Signup and view all the answers

How do enhancers and silencers affect transcription in response to cellular needs?

<p>They modulate transcription based on the cell's requirement for gene products. (A)</p> Signup and view all the answers

What are housekeeping genes responsible for in most cells?

<p>Expressing basic cellular functions (D)</p> Signup and view all the answers

What is one major way eukaryotes regulate gene expression during development?

<p>Through transcription factor proteins (A)</p> Signup and view all the answers

Which process is NOT a post-transcriptional mechanism of gene regulation?

<p>Transcription factor binding (D)</p> Signup and view all the answers

How does chromatin structure influence gene expression?

<p>It can either enhance or restrict accessibility for transcription. (D)</p> Signup and view all the answers

Which statement best describes lineage-specific genes?

<p>They are only expressed in certain cell types. (D)</p> Signup and view all the answers

How does eukaryotic gene regulation primarily differ from prokaryotic gene regulation?

<p>Eukaryotic gene regulation involves histones and is more complex. (C)</p> Signup and view all the answers

Which of the following processes affects gene expression at the level of transcription?

<p>Chromatin modification (B)</p> Signup and view all the answers

What process must mRNAs undergo before they can be transported from the nucleus in eukaryotic cells?

<p>Splicing, capping, and polyadenylation (A)</p> Signup and view all the answers

What role does RNA interference play in gene regulation?

<p>It causes the degradation of target mRNA. (C)</p> Signup and view all the answers

What does spatial regulation refer to in the context of gene expression in multicellular eukaryotes?

<p>The specific locations where genes are expressed. (B)</p> Signup and view all the answers

What is one function of transcription factors in gene regulation?

<p>They bind to regulatory sequences to promote or inhibit transcription. (C)</p> Signup and view all the answers

In multicellular eukaryotic organisms, why can somatic cells in different tissues have distinct functions?

<p>They express different genes despite having the same DNA. (A)</p> Signup and view all the answers

Which of the following is NOT a characteristic of eukaryotic gene regulation?

<p>Transport of mRNAs from the cytoplasm. (B)</p> Signup and view all the answers

What is temporal regulation in gene expression?

<p>The control of the timing of gene expression. (A)</p> Signup and view all the answers

Why is differential regulation of gene expression crucial in multicellular organisms?

<p>It allows different cells to perform unique functions. (B)</p> Signup and view all the answers

How do multicellular eukaryotic organisms manage complex gene expression patterns?

<p>Through spatial and temporal regulations. (C)</p> Signup and view all the answers

What role do transcription factors play in gene expression?

<p>They modulate the connection between enhancers and promoters. (B)</p> Signup and view all the answers

How does enhancer availability affect gene expression in different cell types?

<p>Specific transcription factors in certain cells influence enhancer effectiveness. (B)</p> Signup and view all the answers

What does spatial regulation of gene expression refer to?

<p>The specific genes expressed in various tissues. (A)</p> Signup and view all the answers

Why might some transcription factors only be produced at specific times?

<p>To coordinate with developmental stages or external signals. (D)</p> Signup and view all the answers

Which gene is expressed in the liver cell according to the content provided?

<p>Albumin gene (D)</p> Signup and view all the answers

What defines the biochemical nature of enhancers?

<p>Enhancers interact with specific transcription factors within all cells. (C)</p> Signup and view all the answers

Which of the following best describes the relationship between enhancers and gene expression?

<p>Enhancers must interact with specific transcription factors to activate transcription. (C)</p> Signup and view all the answers

What is the significance of enhancer region modularity?

<p>It enables the selective association of enhancers with specific genes under certain conditions. (A)</p> Signup and view all the answers

What is the primary role of phosphorylation in proteins?

<p>To induce conformational changes in proteins (B)</p> Signup and view all the answers

Which amino acids are primarily involved in the phosphorylation process?

<p>Serine, threonine, and tyrosine (A)</p> Signup and view all the answers

What enzyme is responsible for removing phosphate groups from proteins?

<p>Phosphatase (C)</p> Signup and view all the answers

How does ubiquitination affect proteins?

<p>It targets proteins for degradation (A)</p> Signup and view all the answers

What complex recognizes ubiquitinated proteins for breakdown?

<p>Proteasome (C)</p> Signup and view all the answers

What effect does phosphorylation NOT have on proteins?

<p>It increases protein synthesis (C)</p> Signup and view all the answers

Which of the following statements about posttranslational modifications is incorrect?

<p>They are only reversible changes. (D)</p> Signup and view all the answers

What is the common outcome of a protein being phosphorylated?

<p>Altered conformation and potentially altered activity (D)</p> Signup and view all the answers

What is the main function of RNA interference (RNAi)?

<p>To regulate gene expression posttranscriptionally (D)</p> Signup and view all the answers

What triggers the production of small interfering RNAs (siRNAs)?

<p>Virus infections or lab experimentation (C)</p> Signup and view all the answers

Which enzyme is responsible for recognizing and cleaving double-stranded RNA to form siRNAs?

<p>Dicer (B)</p> Signup and view all the answers

How do micro RNAs (miRNAs) primarily function in the cell?

<p>They regulate gene expression negatively (A)</p> Signup and view all the answers

What potential therapeutic application does RNA interference (RNAi) have?

<p>Attacking diseases caused by specific gene overexpression (D)</p> Signup and view all the answers

What is one way that mRNA localization regulates gene expression?

<p>By controlling timing and localization of translation (A)</p> Signup and view all the answers

What role does cytoplasmic polyadenylation play in mRNA regulation?

<p>It regulates storage and translation timing of mRNAs (D)</p> Signup and view all the answers

Which of the following statements about RNA interference (RNAi) is incorrect?

<p>RNAi directly promotes gene expression. (C)</p> Signup and view all the answers

Flashcards

Eukaryotic Gene Regulation

The complex process of controlling which genes are expressed in eukaryotic cells.

Complexity in Eukaryotic Gene Regulation

Eukaryotic gene regulation differs from prokaryotic regulation due to larger genomes, DNA packaging with proteins, a nucleus, and complex RNA processing.

Differential Gene Expression

Different cells expressing different genes, even with the same DNA.

Spatial Regulation

Controlling where and when genes are expressed in different parts of an organism.

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Temporal Regulation

Controlling when genes are expressed in a cell over time.

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Genome Utilization

How a cell decides what parts of its genome to use.

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Somatic Cells

Non-reproductive cells in multicellular organisms.

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Genomic Instructions

The inherent genetic code present in the DNA of a somatic cell.

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Eukaryotic Promoter

DNA sequence that signals the start of a gene for transcription.

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Transcription Factors

Proteins that bind to DNA and regulate transcription.

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Transcription Initiation Complex

Assembly of proteins needed to begin transcription.

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Enhancers

Regulatory sequences that increase gene expression.

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Silencers

Regulatory sequences that decrease gene expression.

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Gene Expression

The process of using a gene's instructions to create a functional product, usually a protein.

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Eukaryotic Gene Regulation

The control of when and where genes are expressed in a eukaryotic cell.

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Chromatin Structure

The way DNA and proteins are packaged in the cell's nucleus; can affect gene access.

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Transcription Factors

Proteins that bind to DNA and regulate the initiation of transcription.

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Housekeeping Genes

Genes that are consistently expressed in most cells.

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Lineage-Specific Genes

Genes that are expressed only in particular cell types.

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Zygote to Embryo to Adult

The developmental progression where unique combinations of genes influence specific cell types

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Regulation at Transcription Level

"On-off" switch of gene transcription based on cell's needs.

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Enhancer Function

Enhancers are DNA sequences that increase the rate of transcription of target genes, acting like 'speed dials' for gene expression.

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Tissue-Specific Expression

Gene expression controlled by enhancers to occur only in specific cell types (e.g., albumin only in liver cells).

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Transcription Factors

Proteins binding to enhancers that promote transcription.

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Spatial Regulation

Control of gene expression based on location within the organism.

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Temporal Regulation

Control of gene expression based on timing (during development or in response to a signal).

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Enhancer Modularity

Enhancers can be reused to control gene expression because different transcription factor binding sites can be used in different cells.

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Cell-Specific Activators

Proteins that activate gene expression, present only in particular cells, activating specific enhancers

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Expression Control

Regulation of where and when genes are activated based on the presence or absence of transcription factors in different cells.

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RNAi

RNA interference (RNAi) is a sequence-specific way to regulate gene expression after the RNA is created.

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siRNA

Small interfering RNA; short, double-stranded RNA molecules that arise from virus infections or lab experiments.

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microRNA

Short RNA molecules that regulate gene expression without breaking down the mRNA.

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RNA-induced gene silencing

A process where short RNA molecules repress translation and degrade mRNA, thus silencing gene expression.

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Dicer

An enzyme that cleaves double stranded RNA, a step in generating siRNAs.

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mRNA localization

The controlled movement of mRNA molecules within a cell to specific locations for translation.

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Translation initiation

The start of protein synthesis, a step to convert mRNA code into a protein chain.

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Cytoplasmic polyadenylation

Controlling how mRNA translates into proteins through manipulating the poly-A tail in the cytoplasm. This controls when the gene is expressed.

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Post-translational Modification

Changes to a protein after it has been made by the cell.

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Phosphorylation

Adding a phosphate group to a protein.

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Kinase

Enzyme that adds phosphate groups.

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Phosphatase

Enzyme that removes phosphate groups.

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Ubiquitin-Mediated Degradation

Protein targeted for destruction by tagging with ubiquitin.

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Ubiquitin

Molecule that tags proteins for degradation.

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Proteasome

Protein complex that breaks down tagged proteins.

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Protein Activity Regulation

Controlling protein function after creation.

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