Podcast
Questions and Answers
Within the context of genetics, what constitutes the fundamental definition of a gene?
Within the context of genetics, what constitutes the fundamental definition of a gene?
- A complex carbohydrate molecule responsible for energy storage.
- A structural protein that provides support to cellular structures.
- A basic unit of heredity; a sequence of nucleotides in DNA encoding a gene product. (correct)
- A type of lipid molecule that forms the cell membrane.
What is the primary function of transcription in gene expression?
What is the primary function of transcription in gene expression?
- Converting RNA into protein to carry out cellular functions.
- Synthesizing mRNA from a DNA template to transport genetic information out of the nucleus. (correct)
- Replicating DNA to ensure genetic information is passed on during cell division.
- Breaking down proteins into amino acids for recycling within the cell.
Which of the following accurately lists the three main steps of transcription in the correct order?
Which of the following accurately lists the three main steps of transcription in the correct order?
- Elongation, Termination, Initiation
- Replication, Elongation, Termination
- Initiation, Elongation, Termination (correct)
- Initiation, Replication, Termination
What key event occurs during the initiation phase of transcription?
What key event occurs during the initiation phase of transcription?
How do the antisense and sense strands of DNA differ in their roles during transcription?
How do the antisense and sense strands of DNA differ in their roles during transcription?
In what direction does RNA polymerase synthesize the mRNA strand during transcription?
In what direction does RNA polymerase synthesize the mRNA strand during transcription?
Which type of RNA polymerase is primarily responsible for transcribing protein-coding genes in eukaryotes?
Which type of RNA polymerase is primarily responsible for transcribing protein-coding genes in eukaryotes?
What is the role of TFIIH in the transcription initiation process?
What is the role of TFIIH in the transcription initiation process?
How do transcription factors exert control over gene expression?
How do transcription factors exert control over gene expression?
What role do transcription activator proteins play in gene expression?
What role do transcription activator proteins play in gene expression?
What is the function of a mediator in the context of transcriptional initiation?
What is the function of a mediator in the context of transcriptional initiation?
How does the phosphorylation of the RNA Polymerase II CTD (C-terminal domain) contribute to transcriptional regulation?
How does the phosphorylation of the RNA Polymerase II CTD (C-terminal domain) contribute to transcriptional regulation?
What is the primary function of chromosome remodeling factors during transcription?
What is the primary function of chromosome remodeling factors during transcription?
What occurs during the elongation phase of transcription?
What occurs during the elongation phase of transcription?
How does the process of transcription terminate in eukaryotes?
How does the process of transcription terminate in eukaryotes?
What happens to the residual RNA strand after it is cleaved from the mature mRNA during termination?
What happens to the residual RNA strand after it is cleaved from the mature mRNA during termination?
Which of the following is a key difference between transcription in prokaryotes and eukaryotes?
Which of the following is a key difference between transcription in prokaryotes and eukaryotes?
What is the primary function of RNA polymerase I in eukaryotic cells?
What is the primary function of RNA polymerase I in eukaryotic cells?
Which genes are transcribed by RNA polymerase III?
Which genes are transcribed by RNA polymerase III?
What are the three primary types of post-transcriptional modification that occur in eukaryotes?
What are the three primary types of post-transcriptional modification that occur in eukaryotes?
What is the purpose of RNA capping, and where does it occur on the mRNA molecule?
What is the purpose of RNA capping, and where does it occur on the mRNA molecule?
How is the process of polyadenylation initiated, and what enzyme is primarily involved?
How is the process of polyadenylation initiated, and what enzyme is primarily involved?
What is the significance of polyadenylation for mRNA molecules in eukaryotes?
What is the significance of polyadenylation for mRNA molecules in eukaryotes?
What is the purpose of RNA splicing, and what material is removed during this process?
What is the purpose of RNA splicing, and what material is removed during this process?
What is the clinical relevance of tamoxifen?
What is the clinical relevance of tamoxifen?
Which of the following must occur for RNA polymerase II to initiate transcription?
Which of the following must occur for RNA polymerase II to initiate transcription?
How does the modification of histones by acetylation typically affect transcription?
How does the modification of histones by acetylation typically affect transcription?
What is the role of the TATA-binding protein (TBP) in transcription?
What is the role of the TATA-binding protein (TBP) in transcription?
Which of the following is NOT a known function of the 5' cap on eukaryotic mRNA?
Which of the following is NOT a known function of the 5' cap on eukaryotic mRNA?
What would likely be the primary effect of a mutation that inactivates the poly(A) signal sequence in a eukaryotic gene?
What would likely be the primary effect of a mutation that inactivates the poly(A) signal sequence in a eukaryotic gene?
What is the most likely consequence of a mutation that prevents the interaction between a transcription factor and its specific enhancer sequence?
What is the most likely consequence of a mutation that prevents the interaction between a transcription factor and its specific enhancer sequence?
How might a cell respond to an external signal to rapidly increase the production of a specific protein?
How might a cell respond to an external signal to rapidly increase the production of a specific protein?
What describes the role of snRNAs (small nuclear RNAs) in RNA splicing?
What describes the role of snRNAs (small nuclear RNAs) in RNA splicing?
In what way might chromatin remodeling complexes affect gene transcription?
In what way might chromatin remodeling complexes affect gene transcription?
How does the presence of multiple transcription factor binding sites near a gene typically affect its transcription rate?
How does the presence of multiple transcription factor binding sites near a gene typically affect its transcription rate?
How does alternative splicing increase the coding potential of eukaryotic genomes?
How does alternative splicing increase the coding potential of eukaryotic genomes?
Which of the following characteristics is unique to transcription in eukaryotes, but not in prokaryotes?
Which of the following characteristics is unique to transcription in eukaryotes, but not in prokaryotes?
Which event is a direct result of phosphorylating the C-terminal domain (CTD) of RNA polymerase II?
Which event is a direct result of phosphorylating the C-terminal domain (CTD) of RNA polymerase II?
How do small interfering RNAs (siRNAs) typically regulate gene expression?
How do small interfering RNAs (siRNAs) typically regulate gene expression?
Which of the following actions would prevent the elongation phase of transcription?
Which of the following actions would prevent the elongation phase of transcription?
A mutation occurs that impairs the function of TFIIH. What would be the most likely consequence?
A mutation occurs that impairs the function of TFIIH. What would be the most likely consequence?
How does a gene exert its function at the molecular level?
How does a gene exert its function at the molecular level?
What is the immediate product of transcription that requires further processing in eukaryotes?
What is the immediate product of transcription that requires further processing in eukaryotes?
If a cell's RNA polymerase II is non-functional, which process would be directly affected?
If a cell's RNA polymerase II is non-functional, which process would be directly affected?
Which event marks the transition from transcription initiation to elongation?
Which event marks the transition from transcription initiation to elongation?
How does the antisense strand of DNA contribute to transcription?
How does the antisense strand of DNA contribute to transcription?
In what direction does the RNA polymerase move along the DNA template strand during transcription?
In what direction does the RNA polymerase move along the DNA template strand during transcription?
A mutation in RNA polymerase I would most directly affect the production of which type of RNA?
A mutation in RNA polymerase I would most directly affect the production of which type of RNA?
What enzymatic activity is associated with TFIIH that is critical for initiating transcription?
What enzymatic activity is associated with TFIIH that is critical for initiating transcription?
How do gene-specific transcription factors influence gene expression?
How do gene-specific transcription factors influence gene expression?
What role do transcription activator proteins play in influencing the rate of gene transcription?
What role do transcription activator proteins play in influencing the rate of gene transcription?
What function does the mediator complex serve in transcriptional initiation?
What function does the mediator complex serve in transcriptional initiation?
How does phosphorylation of the C-terminal domain (CTD) of RNA Polymerase II affect its function?
How does phosphorylation of the C-terminal domain (CTD) of RNA Polymerase II affect its function?
What is the primary role of chromosome remodeling factors during transcription?
What is the primary role of chromosome remodeling factors during transcription?
Which of the following events occurs during the elongation phase of transcription?
Which of the following events occurs during the elongation phase of transcription?
How is transcription terminated in eukaryotes?
How is transcription terminated in eukaryotes?
Following the cleavage of the mRNA during termination, what happens to the residual RNA strand that remains attached to RNA polymerase?
Following the cleavage of the mRNA during termination, what happens to the residual RNA strand that remains attached to RNA polymerase?
What key feature distinguishes transcription in prokaryotes from transcription in eukaryotes?
What key feature distinguishes transcription in prokaryotes from transcription in eukaryotes?
What is the specific function of RNA polymerase III in eukaryotic cells?
What is the specific function of RNA polymerase III in eukaryotic cells?
What is a common characteristic of genes transcribed by RNA polymerase III?
What is a common characteristic of genes transcribed by RNA polymerase III?
Which post-transcriptional modification protects mRNA from degradation by exonucleases?
Which post-transcriptional modification protects mRNA from degradation by exonucleases?
What is the role of endonuclease in the process of polyadenylation?
What is the role of endonuclease in the process of polyadenylation?
Why is the polyadenylation of mRNA important for eukaryotic gene expression?
Why is the polyadenylation of mRNA important for eukaryotic gene expression?
What is the primary purpose of RNA splicing in eukaryotes?
What is the primary purpose of RNA splicing in eukaryotes?
How does RNA splicing increase the coding potential of eukaryotic genomes?
How does RNA splicing increase the coding potential of eukaryotic genomes?
What is the role of TFIIH in transcription?
What is the role of TFIIH in transcription?
How do chromosome remodeling complexes primarily affect gene transcription?
How do chromosome remodeling complexes primarily affect gene transcription?
Which of the following modifications is necessary for RNA polymerase II to effectively initiate transcription?
Which of the following modifications is necessary for RNA polymerase II to effectively initiate transcription?
What would be the most likely effect of a mutation that disrupts the function of the spliceosome?
What would be the most likely effect of a mutation that disrupts the function of the spliceosome?
Which of these steps is unique to transcription in eukaryotes and does not occur in prokaryotes?
Which of these steps is unique to transcription in eukaryotes and does not occur in prokaryotes?
What direct molecular event results from phosphorylating the C-terminal domain (CTD) of RNA polymerase II?
What direct molecular event results from phosphorylating the C-terminal domain (CTD) of RNA polymerase II?
What type of genes does RNA polymerase I transcribe?
What type of genes does RNA polymerase I transcribe?
What would be the consequence if a mutation caused a defect in TFIIH's helicase activity?
What would be the consequence if a mutation caused a defect in TFIIH's helicase activity?
Tamoxifen reduces the risk of cancer returning, what kind of cancer is this referring to?
Tamoxifen reduces the risk of cancer returning, what kind of cancer is this referring to?
TF3A is recognised by which molecules?
TF3A is recognised by which molecules?
What is the function of this definition: large protein complex that coordinates assembly of all proteins in the transcription initiation complex so transcription can begin?
What is the function of this definition: large protein complex that coordinates assembly of all proteins in the transcription initiation complex so transcription can begin?
What do transcription activator proteins bind to?
What do transcription activator proteins bind to?
What is the function of exonuclease?
What is the function of exonuclease?
What unwinds the DNA strand in transcription?
What unwinds the DNA strand in transcription?
A mutation prevents the binding of TF2D, what does this prevent?
A mutation prevents the binding of TF2D, what does this prevent?
What is the purpose of capping in post transcriptional modification
What is the purpose of capping in post transcriptional modification
What signals cause the splitting of the RNA chain during polyadenylation?
What signals cause the splitting of the RNA chain during polyadenylation?
What is removed from RNA splicing?
What is removed from RNA splicing?
In prokaryotes, what is the term used when mRNAs contain many different genes on a single mRNA?
In prokaryotes, what is the term used when mRNAs contain many different genes on a single mRNA?
If a mutation occurred in the gene coding for TFIIH that impaired its helicase activity, what would be the most likely consequence?
If a mutation occurred in the gene coding for TFIIH that impaired its helicase activity, what would be the most likely consequence?
How does the phosphorylation of the C-terminal domain (CTD) of RNA Polymerase II contribute to transcriptional regulation?
How does the phosphorylation of the C-terminal domain (CTD) of RNA Polymerase II contribute to transcriptional regulation?
Which event is most directly facilitated by chromosome remodeling factors during transcription?
Which event is most directly facilitated by chromosome remodeling factors during transcription?
How does the antisense strand of DNA function in the process of transcription?
How does the antisense strand of DNA function in the process of transcription?
What distinguishes transcription in eukaryotes from transcription in prokaryotes?
What distinguishes transcription in eukaryotes from transcription in prokaryotes?
What is the function of the poly(A) tail added during post-transcriptional modification?
What is the function of the poly(A) tail added during post-transcriptional modification?
Which of the following best describes the activity of transcription activator proteins?
Which of the following best describes the activity of transcription activator proteins?
What is the role of the mediator complex in transcriptional initiation?
What is the role of the mediator complex in transcriptional initiation?
During the termination phase of transcription in eukaryotes, what is the fate of the residual RNA strand that remains attached to RNA polymerase after the mature mRNA is cleaved?
During the termination phase of transcription in eukaryotes, what is the fate of the residual RNA strand that remains attached to RNA polymerase after the mature mRNA is cleaved?
Which of the following is a key function of the 5' cap added to eukaryotic mRNA during post-transcriptional modification?
Which of the following is a key function of the 5' cap added to eukaryotic mRNA during post-transcriptional modification?
How do transcription factors typically control gene expression?
How do transcription factors typically control gene expression?
Tamoxifen, a medication used in breast cancer treatment, works by:
Tamoxifen, a medication used in breast cancer treatment, works by:
What is the function of endonuclease in the polyadenylation process?
What is the function of endonuclease in the polyadenylation process?
In prokaryotes, what is meant by the term 'polycistronic' in the context of mRNA?
In prokaryotes, what is meant by the term 'polycistronic' in the context of mRNA?
What is the function of TF3A in transcription?
What is the function of TF3A in transcription?
What is the purpose of RNA capping?
What is the purpose of RNA capping?
What happens to the introns during RNA splicing?
What happens to the introns during RNA splicing?
Flashcards
Gene Definition
Gene Definition
A basic unit of heredity; a sequence of nucleotides in DNA encoding a gene product.
Role of Transcription
Role of Transcription
To create mRNA from DNA, allowing information to exit the nucleus.
3 Steps of Transcription
3 Steps of Transcription
Initiation, elongation, and termination.
Initiation Summary
Initiation Summary
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Antisense vs. Sense Strand
Antisense vs. Sense Strand
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RNA Polymerase Synthesis Direction
RNA Polymerase Synthesis Direction
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Types of RNA Polymerase
Types of RNA Polymerase
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Role of Transcription Factors
Role of Transcription Factors
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How TFs Control Expression
How TFs Control Expression
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Why Activator Proteins?
Why Activator Proteins?
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What is a Mediator?
What is a Mediator?
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RNA Polymerase CTD Role
RNA Polymerase CTD Role
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Chromosome Remodeling Factors
Chromosome Remodeling Factors
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Elongation Summary
Elongation Summary
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Termination Process
Termination Process
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After Residual RNA Release
After Residual RNA Release
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Pro vs. Euk Transcription
Pro vs. Euk Transcription
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RNA Polymerase 1 Use
RNA Polymerase 1 Use
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RNA Polymerase 3 Use
RNA Polymerase 3 Use
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Post Transcriptional Mods
Post Transcriptional Mods
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RNA Capping
RNA Capping
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Polyadenylation
Polyadenylation
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Importance of Polyadenylation
Importance of Polyadenylation
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RNA Splicing
RNA Splicing
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Clinical Importance of Tamoxifen
Clinical Importance of Tamoxifen
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Study Notes
- A gene serves as a fundamental unit of heredity, comprising a nucleotide sequence in DNA responsible for encoding a gene product.
Transcription Overview
- Transcription is the process of converting DNA into mRNA, which transports genetic information out of the cell nucleus.
- The three main steps of transcription are initiation, elongation, and termination.
Initiation
- RNA polymerase attaches to a specific promoter region, like the TATA box, located upstream on the DNA.
- Transcription factors (TFs) bind to the TATA box, leading to the formation of a transcription initiation complex.
- Formation of the complex allows RNA polymerase to begin unwinding the DNA strand.
Sense vs. Antisense Strand
- The antisense strand is non-coding and used as a template to produce mRNA.
- The sense strand is the coding strand which contains the nucleotide sequence of a gene.
RNA Polymerase Synthesis
- RNA polymerase synthesizes mRNA in the 5' to 3' direction, using the DNA template in the 3' to 5' direction.
RNA Polymerase Types
- RNA polymerase 2 is the most common, transcribing all protein-coding genes.
- RNA polymerase 1 transcribes ribosomal RNA (rRNA).
- RNA polymerase 3 transcribes transfer RNA (tRNA).
Role of Transcription Factors
- TF2D identifies and binds to the TATA box via a TBP subunit, enabling TF2B to bind.
- The remaining general TFs bind, allowing RNA polymerase 2 to access the promoter.
- TFH2 contains DNA helicase and phosphorylates RNA polymerase, releasing it to start elongation.
Control of Gene Expression by Transcription Factors
- Five general TFs are required for RNA polymerase to access the promoter region.
- Gene-specific TFs bind to DNA sequences that control the expression of individual genes.
Transcription Activator Proteins
- Transcription activator proteins enhance or prevent the binding of RNA polymerase, general TFs, and a mediator to the promoter region.
- They also attract ATP-dependent chromatin remodeling complexes and histone-modifying enzymes.
Mediator
- A mediator is a large protein complex that coordinates the assembly of all proteins in the transcription initiation complex, enabling transcription to begin.
Role of RNA Polymerase CTD (C-Terminal Domain)
- Transcription initiates the phosphorylation of RNA polymerase 2 CTD by TF2H kinase, releasing RNA polymerase from the general TFs.
- The phosphorylated CTD then binds to additional proteins, including chromosome remodeling factors.
Chromosome Remodeling Factors
- Chromosome remodeling factors displace nucleosomes during transcription.
Elongation
- RNA polymerase continues to synthesize the mRNA strand during elongation.
Termination
- RNA polymerase does not stop at the termination sequence.
- Instead, a multi-protein complex recognizes the polyadenylation signal.
- The RNA is cleaved downstream, generating mature mRNA and residual RNA still attached to RNA polymerase.
Post-Termination
- Exonuclease attaches to the residual RNA, digesting it in a 5' to 3' direction and displacing RNA polymerase, which detaches from the DNA template.
Transcription Differences: Prokaryotes vs. Eukaryotes
- Prokaryotes have only three upstream elements (3, 10, 35), while eukaryotes have many elements both upstream and downstream.
- Prokaryotes have one type of RNA polymerase, while eukaryotes have three.
- No initiation complex exists in prokaryotes.
- In prokaryotes, transcription and translation occur simultaneously.
- There are no post-transcriptional modifications of RNA in prokaryotes.
- Prokaryotes are polycistronic, meaning mRNAs in prokaryotes contain many different genes on a single mRNA.
RNA Polymerase 1
- RNA polymerase 1 is used for the transcription of ribosomal RNA genes, specifically 45S pre-rRNA (28S, 18S, 5.8S).
RNA Polymerase 3
- RNA polymerase 3 transcribes tRNA genes.
- TF T3A is recognized by TF3C and SNAP, which recruit TF2B and the polymerase to complete transcription.
- Genes are transcribed from 3 distinct classes, 2 of which lie within the promoter region, including rRNA 5S and snRNA.
Post-Transcriptional Modification
- Post-transcriptional modification methods include: capping, polyadenylation, and splicing.
RNA Capping
- Capping involves adding guanine triphosphate to the terminal nucleotide of RNA in reverse linkage.
- The 5' endcap protects mRNA from degeneration by exonuclease.
Polyadenylation
- Cleavage and polyadenylation signals are encoded into DNA.
- When recognized by proteins, including endonuclease, it causes the splitting of the RNA chain, separating poly A polymerase and RNA.
Importance of Polyadenylation
- Polyadenylation protects mRNA from degeneration.
- It aids in the export of mRNA to the cytoplasm.
- Polyadenylation is involved in binding proteins, initiating transcription.
RNA Splicing
- RNA splicing involves the removal of all introns (non-coding regions).
- This includes cleavage at the 5' splice site and joining of the 5' intron as a branch point in a loop which then detaches.
- Splicing enables eukaryotes to increase the coding potential of their genomes.
Clinical Importance of Tamoxifen
- Tamoxifen reduces the risk of breast cancer recurrence.
- It can shrink large hormone receptor-positive breast cancers before surgery.
- Tamoxifen can slow or stop the growth of advanced metastatic hormone-positive cancer
- It lowers the risk of developing breast cancer in people who have a higher than normal risk of the disease but haven't been diagnosed.
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