Lecture 20: Antigen Processing & Presentation

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Questions and Answers

Which of the following cell types is considered the MOST potent antigen-presenting cell (APC)?

  • Macrophages
  • Neutrophils
  • B cells
  • Dendritic cells (correct)

Endogenous antigens are typically loaded onto which type of MHC molecule?

  • MHC class III
  • MHC class II
  • CD1
  • MHC class I (correct)

Which of the following molecules is NOT directly involved in the MHC class I antigen processing pathway?

  • TAP (Transporter associated with Antigen Processing)
  • Proteasome
  • Calnexin
  • Invariant chain (li) (correct)

Cross-presentation is a process that allows which type of antigen to be presented on MHC class I molecules?

<p>Exogenous antigens (A)</p> Signup and view all the answers

What is the primary function of the TAP (Transporter associated with Antigen Processing) protein?

<p>To transport peptides from the cytosol into the endoplasmic reticulum (B)</p> Signup and view all the answers

Which of the following best describes cross-dressing in the context of antigen presentation?

<p>The transfer of preformed MHC-peptide complexes from migrating dendritic cells to lymph node-resident dendritic cells (B)</p> Signup and view all the answers

What is the functional consequence of MHC polymorphism in a population?

<p>Enhanced ability to present a wide range of antigens (B)</p> Signup and view all the answers

Codominant expression of MHC genes ensures that:

<p>Both maternal and paternal MHC alleles are expressed (D)</p> Signup and view all the answers

Which of the following non-classical MHC molecules is known for interacting with NK cell receptors?

<p>MIC (A)</p> Signup and view all the answers

Which of the following is NOT a characteristic of MHC class I molecules?

<p>Requires the invariant chain for proper folding (D)</p> Signup and view all the answers

What is the primary function of HLA-DM in antigen presentation?

<p>To remove CLIP from MHC class II molecules (B)</p> Signup and view all the answers

Which of the following describes the structural difference between MHC class I and MHC class II molecules?

<p>MHC class I consists of a single alpha chain and beta-2 microglobulin, while MHC class II consists of two chains (alpha and beta). (D)</p> Signup and view all the answers

The proteasome is primarily responsible for:

<p>Degrading intracellular proteins into peptides for MHC class I presentation (D)</p> Signup and view all the answers

Certain viruses can interfere with antigen presentation pathways. Which of the following viral mechanisms would MOST directly inhibit MHC I presentation of viral antigens?

<p>Inhibiting the function of the TAP transporter (D)</p> Signup and view all the answers

Which of the following is NOT a characteristic of 'professional' antigen-presenting cells (APCs)?

<p>Present antigens exclusively to CD8+ T cells (A)</p> Signup and view all the answers

In the context of antigen processing and presentation, what is the role of ERAP (ER-resident aminopeptidase)?

<p>To trim oversized peptides in the endoplasmic reticulum for MHC class I binding (A)</p> Signup and view all the answers

Which of the following is the MOST accurate description of MHC restriction?

<p>T cells can only recognize peptides when presented by MHC molecules from the same individual. (B)</p> Signup and view all the answers

Which of the following immune deficiencies would MOST directly impair MHC class I presentation?

<p>Deficiency in B2-microglobulin (C)</p> Signup and view all the answers

An experiment is conducted where cells are treated with a drug that inhibits the acidification of endosomes. Which of the following processes would be MOST directly affected?

<p>MHC class II presentation of extracellular antigens (B)</p> Signup and view all the answers

Which of the following best describes the function of CD1 molecules?

<p>Presenting glycolipid antigens to T cells (A)</p> Signup and view all the answers

Which of the following statements best describes the role of invariant chain (Ii) in MHC class II antigen processing?

<p>It prevents MHC class II molecules from binding peptides in the ER and directs them to the endosomal pathway. (C)</p> Signup and view all the answers

A patient has a genetic defect that results in non-functional beta-2 microglobulin. What is the MOST likely immunological consequence?

<p>Defective MHC Class I antigen presentation. (A)</p> Signup and view all the answers

A researcher discovers a new molecule that enhances the stability of peptide-MHC class I complexes on the cell surface. This molecule would MOST likely enhance:

<p>T cell activation (B)</p> Signup and view all the answers

What is the role of the enzyme Cathepsin S in MHC Class II antigen processing?

<p>It cleaves the invariant chain (li) within endosomes. (D)</p> Signup and view all the answers

Which of the following is the MOST likely outcome if a cell lacked the ability to express MHC molecules?

<p>Impaired T cell activation (D)</p> Signup and view all the answers

A researcher is studying the immune response to a novel intracellular bacterium. They observe that CD8+ T cells are activated, but MHC class I expression is abnormally low. Which of the following proteins might the bacterium be targeting to suppress the immune response?

<p>TAP (A)</p> Signup and view all the answers

What is the significance of linkage disequilibrium in the context of HLA genes?

<p>It describes the phenomenon where certain HLA alleles occur together more frequently than expected by chance (A)</p> Signup and view all the answers

A mutation in the gene encoding for ERAP1 results in a loss of function. Which of the following would be MOST directly affected by this mutation?

<p>The trimming of long peptides for MHC I presentation (A)</p> Signup and view all the answers

A patient with a rare genetic disorder has a complete absence of MHC class II expression. Which of the following immune cell interactions would be MOST directly impaired in this individual?

<p>Helper T cell activation by antigen-presenting cells (D)</p> Signup and view all the answers

A researcher is investigating a new viral protein that interferes with antigen presentation. They find that this protein prevents the association of B2-microglobulin with MHC class I heavy chain. What is the MOST likely consequence of this interference?

<p>Decreased surface expression of stable MHC class I molecules (B)</p> Signup and view all the answers

A therapeutic strategy aims to enhance the immune response against tumor cells by increasing the expression of MHC class I molecules on the tumor cell surface. Which of the following cytokines would be MOST appropriate to use for this purpose?

<p>IFN-γ (B)</p> Signup and view all the answers

A patient presents with a mutation affecting the function of HLA-DO. Understanding its role, what downstream effect would you predict?

<p>Increased peptide loading onto MHC class II molecules for antigens that were previously subdominant. (C)</p> Signup and view all the answers

A researcher is studying antigen processing in a novel cell type and observes peptide loading onto MHC class I molecules in the absence of TAP. Which of the following pathways is MOST likely responsible for antigen presentation in this scenario?

<p>Cross-presentation via the vacuolar pathway (B)</p> Signup and view all the answers

Consider a scenario where a virus has evolved a mechanism to downregulate the expression of both MHC class I and MIC molecules on infected cells. This strategy would MOST directly impair which two immune cell populations?

<p>CD8+ T cells and NK cells (C)</p> Signup and view all the answers

A researcher is trying to design a vaccine that will elicit a strong CD8+ T cell response against a specific tumor antigen. Which of the following strategies would be MOST effective in ensuring that the tumor antigen is efficiently presented on MHC class I molecules?

<p>Delivering the antigen directly into the cytosol of dendritic cells (A)</p> Signup and view all the answers

A new drug is developed that specifically blocks the function of calnexin. Which of the following processes would be MOST directly inhibited by this drug?

<p>Assembly and folding of MHC class I molecules (A)</p> Signup and view all the answers

If a patient exhibits a chronic infection resulting from the inability to properly clear intracellular pathogens due to a defect in CD40L, which of the following professional APC cell types, responsible for bridging innate and adaptive immunity, would MOST directly contribute to the observed symptoms?

<p>Dendritic cells (C)</p> Signup and view all the answers

Consider an individual lacking functional non-classical MHC Ib molecule HLA-G. Which of the following immune responses would MOST likely be affected in this individual?

<p>NK cell-mediated cytotoxicity. (A)</p> Signup and view all the answers

Which of the following is an example of an alloantigen?

<p>An antigen present in some, but not all, individuals of the same species. (C)</p> Signup and view all the answers

What is the MAIN function of the invariant chain (Ii) in MHC class II antigen processing?

<p>To prevent peptide binding to MHC class II in the endoplasmic reticulum. (B)</p> Signup and view all the answers

Which of the following BEST describes the term 'MHC restriction'?

<p>The requirement for T cells to recognize antigen only when presented by self-MHC molecules. (B)</p> Signup and view all the answers

Why is polymorphism in MHC genes important for population survival?

<p>It increases the likelihood that some individuals can respond to new pathogens. (A)</p> Signup and view all the answers

Which of the following is the MOST likely function of non-classical MHC class Ib molecules?

<p>Interacting with NK cell receptors to modulate cytotoxicity. (D)</p> Signup and view all the answers

A researcher is studying a novel viral protein that inhibits the function of ERAP. Which of the following processes would be MOST directly affected?

<p>Trimming of peptides in the endoplasmic reticulum to fit MHC class I molecules. (B)</p> Signup and view all the answers

A cell is unable to acidify its endosomes. Which of the following processes will be MOST affected?

<p>MHC class II presentation of exogenous antigens. (D)</p> Signup and view all the answers

A researcher discovers a new molecule that enhances the stability of peptide-MHC class I complexes on the cell surface, but only for certain viral antigens. This molecule would MOST likely enhance:

<p>The T cell receptor signaling and T cell activation specific to those viral antigens. (B)</p> Signup and view all the answers

How does cross-dressing MOST directly contribute to CD8+ T cell activation?

<p>By transferring preformed peptide-MHC I complexes from one dendritic cell to another. (B)</p> Signup and view all the answers

In a scenario where a virus downregulates both MHC class I and MIC molecules on infected cells, which two immune cell populations would be MOST directly impaired?

<p>NK cells and CD8+ T cells (A)</p> Signup and view all the answers

Given the known promiscuity of MHC class II molecules, how does the immune system prevent excessive cross-reactivity that could lead to widespread autoimmunity?

<p>Via a complex interplay of costimulatory signals and regulatory T cell activity, imposing a high threshold for T cell activation. (D)</p> Signup and view all the answers

In the context of tumor immunology, if cancer cells downregulate MHC class I expression to evade CD8+ T cell recognition, what compensatory mechanism might they exploit to simultaneously avoid NK cell-mediated killing?

<p>Elevated expression of non-classical MHC class Ib molecules, like HLA-G, which engage inhibitory receptors on NK cells. (B)</p> Signup and view all the answers

An experimental drug inhibits the function of cathepsin S specifically within dendritic cells. What downstream effect would MOST directly compromise the adaptive immune response?

<p>Reduced degradation of the invariant chain, leading to defective MHC class II peptide loading and subsequent CD4+ T cell activation. (B)</p> Signup and view all the answers

A hypothetical virus inhibits ERAP1 and TAP function in infected cells. What combined immunological consequence would MOST significantly impair the host's ability to mount an effective CD8+ T cell response?

<p>Prevention of peptide translocation into the endoplasmic reticulum and subsequent peptide trimming for optimal MHC I binding. (B)</p> Signup and view all the answers

If a novel pathogen evolved to disrupt the interaction between HLA-DM and MHC class II molecules, but only in B cells, what specific immunological defect would MOST likely manifest?

<p>Defective antibody affinity maturation in germinal centers due to impaired T follicular helper cell (Tfh) interactions. (A)</p> Signup and view all the answers

In a scenario where a cell expresses functional MHC class I molecules, but is completely deficient in beta-2 microglobulin, what cellular interaction would be MOST directly affected?

<p>Interaction with the CD8 co-receptor on cytotoxic T lymphocytes, preventing target cell recognition. (A)</p> Signup and view all the answers

Given the role of autophagy in antigen presentation, what is the MOST likely mechanism by which a tumor cell might exploit defects in autophagy to evade immune surveillance by T cells?

<p>Preventing the delivery of intracellular antigens and MHC class I molecules to lysosomes for degradation. (A)</p> Signup and view all the answers

Consider a novel therapeutic strategy that involves engineering dendritic cells to express a constitutively active form of ERAP1. What is the MOST likely outcome of this modification on antigen presentation?

<p>Enhanced presentation of excessively trimmed peptides, leading to reduced T cell avidity and immune tolerance. (C)</p> Signup and view all the answers

A new viral strain expresses a protein that directly binds and inhibits the function of tapasin. What is the MOST likely mechanism by which this viral protein interferes with antigen presentation?

<p>Disrupting the assembly of the peptide loading complex and preventing stable association of MHC class I with antigenic peptides. (B)</p> Signup and view all the answers

In the context of MHC genetics, what evolutionary advantage is MOST directly conferred by the high degree of polymorphism observed in HLA genes within a population?

<p>Enhanced ability to present a wider array of pathogen-derived peptides, increasing the likelihood that individuals can mount an effective immune response. (C)</p> Signup and view all the answers

How does the phenomenon of 'cross-dressing' MOST directly enhance the priming of naive CD8+ T cells during a viral infection?

<p>By transferring preformed peptide-MHC class I complexes from infected dendritic cells to non-infected dendritic cells in the lymph node, facilitating T cell activation. (C)</p> Signup and view all the answers

If a patient has a mutation that results in the complete absence of functional HLA-DO, what specific aspect of MHC class II antigen presentation would be MOST affected?

<p>The stabilization of peptide-MHC class II complexes on the cell surface, promoting prolonged T cell activation. (C)</p> Signup and view all the answers

In a scenario where a virus significantly downregulates the expression of both MHC class I and MIC molecules on infected cells, which two immune cell populations would be MOST directly impaired in their ability to respond to the infection?

<p>CD8+ T cells and NK cells. (B)</p> Signup and view all the answers

To elicit a robust CD8+ T cell response against a specific tumor antigen, which of the following vaccine strategies would be MOST effective in ensuring efficient presentation on MHC class I molecules?

<p>Using a recombinant viral vector to deliver the tumor antigen gene directly into antigen-presenting cells. (D)</p> Signup and view all the answers

If a new drug specifically blocks the function of calnexin, which of the following processes involved in MHC class I antigen presentation would MOST immediately be inhibited?

<p>Association of beta-2 microglobulin with the MHC class I heavy chain. (A)</p> Signup and view all the answers

What is the MOST likely functional consequence of a mutation affecting the peptide-binding groove of an MHC class I molecule, rendering it unable to bind any peptides?

<p>Increased susceptibility to intracellular pathogens due to a failure to activate CD8+ T cells. (D)</p> Signup and view all the answers

Consider an individual with a genetic defect resulting in non-functional non-classical MHC Ib molecule HLA-G. Which of the following immune responses would MOST likely be affected?

<p>Inhibition of NK cell cytotoxicity and maintenance of immune tolerance at the maternal-fetal interface. (A)</p> Signup and view all the answers

Within the framework of adaptive immunity, what is the MOST accurate interpretation of the term 'MHC restriction' in the context of T cell activation?

<p>The requirement for T cell receptors (TCRs) to recognize both the antigenic peptide AND the specific MHC molecule presenting that peptide for activation. (C)</p> Signup and view all the answers

A researcher is investigating a novel compound that selectively enhances the stability of peptide-MHC class I complexes on the cell surface, but only for specific viral antigens. This enhancement would MOST directly amplify which of the following immune functions?

<p>CD8+ T cell-mediated killing of virus-infected cells. (D)</p> Signup and view all the answers

A cell is genetically engineered to be completely unable to acidify its endosomes. Which of the following immunological processes will be MOST directly impaired as a result?

<p>Degradation of endocytosed proteins and loading of peptides onto MHC class II molecules. (C)</p> Signup and view all the answers

Consider a newly identified pathogen that triggers a potent inflammatory response, leading to increased expression of both MHC class I and class II molecules. What is the MOST likely underlying mechanism driving this upregulation?

<p>Increased production of type I interferons and IFN-γ by immune cells. (C)</p> Signup and view all the answers

If a novel immunotherapeutic agent selectively ablates HLA-DO function within antigen-presenting cells, but without affecting HLA-DM activity, which of the following immunological consequences is MOST likely to occur?

<p>Dysregulated MHC class II peptide loading with increased presentation of suboptimal, low-affinity antigens, diminishing T helper cell activation. (C)</p> Signup and view all the answers

A research team engineers a recombinant virus expressing a novel protein that competitively binds to the peptide-loading groove of MHC class I molecules with extremely high affinity, preventing the binding of endogenous peptides. Which of the following strategies would MOST effectively restore MHC class I-mediated antigen presentation?

<p>Targeted delivery of a proteasome-resistant, high-affinity peptide-MHC complex stabilizer to increase the avidity of peptide-MHC interactions. (A)</p> Signup and view all the answers

In a hypothetical scenario, a population of antigen-presenting cells is engineered to express a mutant form of tapasin that retains its ability to bind MHC class I molecules and other components of the peptide-loading complex (PLC) but is incapable of undergoing conformational changes required for optimal peptide loading. What is the MOST likely immunological consequence?

<p>Impaired peptide editing and reduced surface expression of stable peptide-MHC class I complexes, resulting in diminished T cell activation. (D)</p> Signup and view all the answers

A researcher is investigating a novel mechanism of immune evasion employed by a specific intracellular bacterium. They discover that the bacterium secretes a protein that selectively inhibits the function of Rubicon-like autophagy regulator (RUBCN) specifically within dendritic cells (DCs). What is the MOST likely consequence of this bacterial interference on antigen presentation and adaptive immunity?

<p>Impaired cross-presentation of bacterial antigens via MHC class I, resulting in diminished activation of CD8+ T cells and reduced bacterial clearance (D)</p> Signup and view all the answers

A research scientist generates a line of mice with a targeted mutation in the gene encoding cathepsin S, specifically designed to abolish its enzymatic activity only within dendritic cells (DCs). Following immunization with a protein antigen, which of the following outcomes is MOST likely observed in these mice compared to wild-type controls?

<p>Impaired MHC class II antigen processing and presentation, leading to reduced CD4+ T cell activation and diminished antibody production. (C)</p> Signup and view all the answers

A novel viral strain exhibits a unique immune evasion strategy by expressing a modified ubiquitin ligase that specifically targets and ubiquitinates newly synthesized MHC class II molecules within antigen-presenting cells, leading to their proteasomal degradation prior to peptide loading. Which of the following cellular compartments would exhibit the MOST significant accumulation of ubiquitinated MHC class II molecules in these cells?

<p>Endoplasmic reticulum (ER). (C)</p> Signup and view all the answers

Consider a scenario in which a research team discovers a novel variant of HLA-DM that exhibits a significantly enhanced affinity for binding CLIP-MHC class II complexes but is severely impaired in its ability to release once peptide loading is complete. What is the MOST likely immunological consequence of this altered HLA-DM function?

<p>Diminished MHC class II presentation due to inefficient peptide exchange and prolonged occupancy of CLIP, resulting in impaired CD4+ T cell activation. (B)</p> Signup and view all the answers

A research group generates a mutant cell line lacking the ER-resident protein RTN4 (Reticulon 4), known for its role in shaping ER morphology. Considering RTN4's function, which aspect of MHC class I antigen presentation would be MOST directly affected in these cells?

<p>The formation of the peptide-loading complex (PLC) due to altered ER membrane curvature. (B)</p> Signup and view all the answers

Following exposure to a novel environmental toxin, a patient exhibits a selective defect in the expression of non-classical MHC class Ib molecule HLA-G. Given the known functions of HLA-G, which of the following immunological consequences would be MOST likely observed in this patient?

<p>Uncontrolled NK cell activity leading to increased lysis of normal cells. (B)</p> Signup and view all the answers

In a study analyzing the consequences of interallelic conversion within the MHC locus, researchers identify a novel recombinant allele exhibiting a mosaic structure derived from two distinct HLA-B allotypes. This recombinant allele displays a unique peptide-binding motif characterized by enhanced affinity for peptides containing a specific non-canonical amino acid. What is the MOST likely functional consequence of this novel peptide-binding specificity?

<p>Enhanced recognition of pathogen-derived antigens containing the non-canonical amino acid, leading to increased resistance to infection. (A)</p> Signup and view all the answers

Flashcards

Professional APCs

B cells, macrophages, and dendritic cells; dendritic cells are the most potent.

MHC Class I vs. II

MHC class I presents endogenous antigens to CD8+ T cells, while MHC class II presents exogenous antigens to CD4+ T cells.

Types of Endogenous Antigens

Self-antigen, tissue-specific antigen, intracellular pathogens

Exogenous Antigens

These antigens freely circulate bodies and are trapped by APCs. Uptake is mediated by phagocytosis.

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Antigen Presentation

Uses APCs to process and present antigens via MHC molecules for T cell recognition.

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Dendritic Cells (DCs)

They are specialized class of APCs that capture, process, and display antigens to activate CD4+ and CD8+ T cells.

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DC Antigen Processing Steps

Capture proteins, process them into peptides, load onto the MHC, then display.

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MHC/HLA

Major histocompatibility complex molecules that express human leukocyte antigens

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CD8+ T cells and MHC Class I

CD8+ T cells recognize peptides only when bound to MHC class I molecules.

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CD4+ T cells and MHC Class II

CD4+ T cells recognize peptides only when bound to MHC Class II molecules

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Class I Presentation

MHC class I presents endogenous antigens to CD8+ T cells.

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Class II Presentation

MHC class II presents exogenous antigens to CD4+ T cells.

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Endogenous Antigens

The body's own cellular components or intracellular pathogens.

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Viral Antigen Processing

Viral antigens captured and delivered to lymph nodes to be presented to T cells.

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Cytosolic Pathway (Cross-Presentation)

DC phagosomes have pumps to transport degraded proteins into cytosol.

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Vacuole Pathway (Cross-Presentation)

MHC Class I molecules delivered to the phagolysosome by a transport vesicle.

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Cross-dressing

Preformed MHC-peptide transfer from migrating DC to LN resident DC

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MHC Class I Stabilization

Peptides stabilize MHC class I molecules promoting transport to the cell surface.

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TAP (Transporter associated with Ag Processing)

Transports peptides across the ER membrane into the ER Lumen using ATP.

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HLA-E Function

HLA-E binds peptides and engages NK cells. Interaction w/ NKG2A or NKG2B = inhibition

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MICA/MICB Activation

MICA and MICB expression is increased by the cells due to stress triggers.

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T Cell Activation Requirement

T cells require antigen display by antigen-presenting cells (APCs) for their activation.

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Antigen pathway in Dendritic cells

Dendritic cells capture proteins, process them into peptides, load them onto MHC molecules, and display them.

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Human MHC name

MHC molecules of humans are termed Human Leukocyte Antigens (HLA).

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HLA polymorphism

Genes encoding alpha chain are highly variable. The variability is called HLA polymorphism.

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What is MHC Restriction?

MHC restriction refers to the phenomenon in which T cells can only respond to antigens presented on MHC from the same host.

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Constitutive Proteasome

Constitutive proteasomes are active in the absence of infection and degrades damaged/non-functional cytosolic proteins.

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Immunoproteasome

The immunoproteasome is induced by IFN-γ and produces peptides that bind easily to MHC class I.

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Function of ERAP

ERAP trims oversized peptides to 8-10 residues for MHC class I loading.

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MHC Class II Vesicle

Class II molecules in vesicles degrade antigens, invariant chain blocks MHC II peptide-binding site.

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Function of Cathepsin S

Cathepsin S cleaves invariant chain, leaving CLIP which is displaced for peptide loading.

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Action of HLA-DM

HLA-DM removes CLIP to aid peptide access and binding to MHC class II molecules.

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Infection-Antigen processing Relationship

During infections IL-1, IL-6, and TNF-α may promote a fever for optimal antigen processing

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Interallelic conversion result

Interallelic conversion is when a segment of one allele is replaced to alter residues of the peptide-binding groove.

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Linkage Disequilibrium

HLA-B8 and HLA-DR3 are found more commonly together; such events are known as linkage disequilibrium.

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MHC allotypes mutations' effect

Mutations that distinguish MHC allotypes affect peptide binding and TCR interaction.

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HLA-F stimulation

HLA-F is localized to ER & Golgi w/ limited surface expression & binds a restricted set of Ags

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MHC peptide interaction

Molecular interactions of MHC peptide has similar amino acids and positions w/the peptide sequence; anchor residues

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Study Notes

  • T cells get activated by antigens presented on MHC class I (CD8+ T cells) and II molecules (CD4+ T) with professional antigen presenting cells (B cells, macrophages, dendritic cells).
  • Dendritic cells are the most potent APC.
  • Endogenous antigens (8-11 aa) load onto MHC class I molecules with ERAP, proteasome, TAP, calnexin, Erp57-tapasin-calreticulin.
  • Exogenous antigens (10-30 aa) load onto MHC class II molecules with invariant chain, CLIP, HLA-DM.
  • Cross-presentation of antigens places the antigen on MHC I while originating from exogenous sources by transport or degradation in MHC I-positive phagosomes.
  • CD8+ T cells can also be stimulated by LN resident DC by obtaining Ag-loaded MHC I molecules from migrating DC using cross-dressing.
  • MHC class I (HLA-A, B, C) and MHC class II (HLA-DP, -DQ, -DR) have varied polymorphism, have pockets for peptide anchor residues to bind, and are codominantly expressed.
  • T cells are MHC-restricted in only responding to antigens displayed on self MHC.
  • Nonclassical MHC molecules (HLA-E, -F, -G and MICs) help with NK and CTL cytotoxicity through activation or inhibition.
  • CD1 is structurally similar to MHC class I while functionally similar to MHC class II.

Types of Antigens

  • Endogenous antigens are the body's own cellular components or intracellular pathogens:
    • Autoantigens are self-antigens.
    • Alloantigens are tissue-specific antigens, such as ABO and HLA.
    • Intracellular pathogens include viruses, intracellular bacteria, and parasites.
  • Exogenous antigens enter the body or system and freely circulate, getting trapped by APCs with phagocytosis.

Antigen Recognition

  • The body relies on cell surface receptors to recognize antigens so it can respond to them
  • Next focus will be on the mechanisms underlying construction of both the B cell receptor (BCR) and T cell receptor (TCR)

Dendritic Cells

  • Dendritic cells (DC) function specifically to capture/process antigens and display them to activate CD4+ and CD8+ T cells.
  • DC capture antigens and process them into small peptides
  • These peptides then bind to Major Histocompatibility Complexes (MHC).
  • Dendritic cells act as presenters of these antigens to activate T cells
  • Dendritic cells support the functions of other cells like NK cells

Professional APCs

  • Includes dendritic cells, macrophages, and B cells.
  • Dendritic cells are the principle inducers of T cell-independent immune responses
  • Macrophages phagocytose microbes, process antigens, and display them on MHC to T cells
  • T cells are already activated in macrophages
  • B cells ingest antigens and display them on MHC to CD4+ T helper cells in lymphoid tissues to generate humoral immunity (antibody response).

Antigen Loading

  • Dendritic cells capture proteins, process them to create peptides, load them onto MHC, and eventually display the peptide-MHC complex.

MHC Molecules

  • Major histocompatibility complex types I and II are also referred to as human leukocyte antigen (HLA).
  • Class I is found on all nucleated cells.
  • Class II is found on professional APCs like dendritic cells, macrophage, B lymphocytes, and some thymocytes.
  • Class I and II molecules constitutively express MHC

MHC Class I

  • CD8+ T cells recognize peptides when they’re bound to MHC class I molecules.
  • CD8 molecules can only bind to MHC class I molecules.
  • All nucleated cells can process proteins to load peptides onto MHC class I molecules.

MHC class II

  • CD4+ T cells recognize peptides when bound to MHC class II molecules.
  • CD4 molecules can only bind to MHC class II.
  • Only professional APC and some thymic cells can process proteins and load peptides onto MHC class II molecules.

Two Pathways

  • Each pathway activates the T lymphocyte best for a specific antigen
  • Endogenous pathogens and self antigens involve presentation via Class I MHC/HLA to CD8+ T cells.
  • Exogenous pathogens undergo Class II MHC/HLA presentation to CD4+ T cells.
  • During infections, IL-1, IL-6, and TNF-a production may promote a fever to enhance both MHC-TCR interactions and antigen processing.

Cytosolic Proteins

  • Proteins in the cell cytosol are cut into peptides by the proteasome and enter the ER
  • Proteasomes are active in cells that do not have infections
  • They degrade damaged and poorly folded proteins that are no longer needed or not functional
  • Immunoproteosomes are induced by IFN-γ and produces peptides that easily bind to MHC class I molecules
  • TAP then transports peptides generated by the immunoproteasome

TAP Transport

  • TAP functions by transporting peptides across the ER membrane into the ER lumen using ATP
  • The rapid transport in immunoproteosomes can cause TAP deficiency
  • TAP deficiency results in chronic respiratory infections from birth and minimal CD8+ T cell responses

MHC Class I Assembly

  • MHC class I molecules construct adjacent to peptide entry in the ER
  • Alpha and Beta-2 microglobulin chains produce in the ER
  • Calnexin stabilizes construction of the MHC I alpha chain
  • When the Beta2m binds the alpha chain is displaced
  • MHC I molecules associate with TAP with the aid of ERp57-Tapasin-Calreticulin
  • TAP-transported peptides then bind to the groove of the MHC I molecule
  • Peptide binding stabilizes the MHC I complex, releasing Tapasin
  • The signal peptide then transports to the loaded MHC I molecule to the cell surface.
  • ERAP removes the N-terminal amino acids to give a peptide with 8-10 residues

MHC Class II

  • Endosomes and Phagosomes acidify and degrade antigens
  • Extracellular materials continue being uptaken by endocytic vesicles
  • Endosomes and phagosomes mature while new vesicles fuse and provide degradation machinery, including vacuolar ATPase and proteases.
  • Phagosomes fuse with lysosomes to generate phagolysosomes where proteins are unfolded into peptides
  • Invariant chains stabilize and direct MHC class II molecules to vesicles
  • Cathepsin S and proteases cleave invariant chains
  • The remaining fragment that bounded to the peptide binding site is named CLIP (Class II-associated invariant chain peptide)
  • Acidification from endosomes and phagolysosomes yields peptides that can displace CLIP.
  • MHC class II molecules exit the MIIC fused vesicle and goes to the cell surface when loaded with the peptide in a transport vesicle
  • HLA-DM removes CLIP to help peptides access/bind to MHC II
  • This binding triggers HLA-Dm release, HLA-DO blocks this to steady Ag presentation
  • IFN-y increases the expression of HLA-DM and Ag presentation

Additional Mechanisms

  • Influenza antigens are delivered to lymph nodes to present T cells
  • Ags loaded onto MHC class I molecules are shown to be derived endogenouly
  • Here the Ags from an exogenous source phagocytize the viruses
  • Infected cells and viral picked up by APC

Cross-presentation

  • Antigens presented include DC expressing MHC molecules
  • APCs use these pathways:
    • Cytosolic Pathway: DC phagosomes insert membrane-spanning pumps where degraded proteins are transported and loaded onto MHC I
    • Vacuole Pathway: Class I molecules delivered to phgolslysome with transport vescile

Cross-dressing

  • Involves transfer of MHC-peptide from a migrating DC to LN resident DC:
    • Via direct presentation where cells sendogenous antigen undergo endogenous MHC
    • Via cross-presentation with cells that exogenous antigen that have had endogenous MHCI

What are some features of MHC

  • The MHC is a class of proteins that can display many different peptides

Major Histocompatibility Complexes

  • In humans, the MHC is termed Human Leukocyte Antigens (HLA)

HLA class I molecules

  • HLA molecules present to stimulate antigens to activate CD8+ T cells
  • HLA molecules have genes that encodes in the region of the alpha chain:
    • These genes are polymorphic or have may forms which causes HLA polymorphism
  • One alpha chain plus one B2-microglobulin composes the I molecule
  • Interferons can increase in expression of Alpha and B2-macroglobulin and TAP

HLA class II molecules

  • Help by presenting peptide Antigens to activate CD4+ T cells
  • Made out of an alpha and beta chain and Expression can be changed with IFN-γ for HLA-DM molecules, HLA-DP, HLA-DQ, HLA-DR, and the invariant chan

HLA class II polymorphism

HLA-DP: single alpha(DPA1) and beta(DPB1) chain genes HLA-DQ:Two sets of alpha and beta chain genes HLA-DR: Single, alpha chain gene

Inheritance of HLA Genes

  • Haplotypes combine HLA alleles on a chromosome:
    • Can have an inherited diversity cause by numbers of gene families and through genetic polymorphism (multiple alternative or allelic forms of gene)

Mechanism Underlying HLA Genetic Polymorphism

  • Point mutations can distinguish MHC and the diversity can have an interallelic conversion where allele gets replaced by homologous section

Nonclassical MHC Classs lb Molecules

  • HLA-E molecules inhibit and stimulate certain NK cells when binding to peptides with certain inhibitors

MIC

  • MHC class 1 relation, can interact with NK cells to secreted cytokines, induced by stress signals when certain proteins are overriden

Presentation of Nonproteins

  • CD! and MHC class 1, can express lipid linked molecules
  • There are 5 genes and molecules display few variants

Polymorphism in MHC

  • The binding grooves permit several different peptides
  • High amino acid variability happens if binding to nearby grooves

Recognition of Ag

  • Happens by contacting amino acids with receptors
  • T cell doesn't know antigen on non self cause doesn't recognize MHC which causes restriction

MHC Peptide Binding

  • Each MHC molecule can only display one peptide at a time
  • Peptides are acquired during intracellular assembly
  • There is broad specificity as many different peptides can bind to the same MHC molecule
  • There is a very slow off rate as the MHC molecule displays the bound peptide for long enough to be located and recognized by T cells
  • Stable expression requires a peptide
  • MHC only bind to restricted T cells rather than a broader spectrum

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