Podcast
Questions and Answers
Which of the following cell types is considered the MOST potent antigen-presenting cell (APC)?
Which of the following cell types is considered the MOST potent antigen-presenting cell (APC)?
- Macrophages
- Neutrophils
- B cells
- Dendritic cells (correct)
Endogenous antigens are typically loaded onto which type of MHC molecule?
Endogenous antigens are typically loaded onto which type of MHC molecule?
- MHC class III
- MHC class II
- CD1
- MHC class I (correct)
Which of the following molecules is NOT directly involved in the MHC class I antigen processing pathway?
Which of the following molecules is NOT directly involved in the MHC class I antigen processing pathway?
- TAP (Transporter associated with Antigen Processing)
- Proteasome
- Calnexin
- Invariant chain (li) (correct)
Cross-presentation is a process that allows which type of antigen to be presented on MHC class I molecules?
Cross-presentation is a process that allows which type of antigen to be presented on MHC class I molecules?
What is the primary function of the TAP (Transporter associated with Antigen Processing) protein?
What is the primary function of the TAP (Transporter associated with Antigen Processing) protein?
Which of the following best describes cross-dressing in the context of antigen presentation?
Which of the following best describes cross-dressing in the context of antigen presentation?
What is the functional consequence of MHC polymorphism in a population?
What is the functional consequence of MHC polymorphism in a population?
Codominant expression of MHC genes ensures that:
Codominant expression of MHC genes ensures that:
Which of the following non-classical MHC molecules is known for interacting with NK cell receptors?
Which of the following non-classical MHC molecules is known for interacting with NK cell receptors?
Which of the following is NOT a characteristic of MHC class I molecules?
Which of the following is NOT a characteristic of MHC class I molecules?
What is the primary function of HLA-DM in antigen presentation?
What is the primary function of HLA-DM in antigen presentation?
Which of the following describes the structural difference between MHC class I and MHC class II molecules?
Which of the following describes the structural difference between MHC class I and MHC class II molecules?
The proteasome is primarily responsible for:
The proteasome is primarily responsible for:
Certain viruses can interfere with antigen presentation pathways. Which of the following viral mechanisms would MOST directly inhibit MHC I presentation of viral antigens?
Certain viruses can interfere with antigen presentation pathways. Which of the following viral mechanisms would MOST directly inhibit MHC I presentation of viral antigens?
Which of the following is NOT a characteristic of 'professional' antigen-presenting cells (APCs)?
Which of the following is NOT a characteristic of 'professional' antigen-presenting cells (APCs)?
In the context of antigen processing and presentation, what is the role of ERAP (ER-resident aminopeptidase)?
In the context of antigen processing and presentation, what is the role of ERAP (ER-resident aminopeptidase)?
Which of the following is the MOST accurate description of MHC restriction?
Which of the following is the MOST accurate description of MHC restriction?
Which of the following immune deficiencies would MOST directly impair MHC class I presentation?
Which of the following immune deficiencies would MOST directly impair MHC class I presentation?
An experiment is conducted where cells are treated with a drug that inhibits the acidification of endosomes. Which of the following processes would be MOST directly affected?
An experiment is conducted where cells are treated with a drug that inhibits the acidification of endosomes. Which of the following processes would be MOST directly affected?
Which of the following best describes the function of CD1 molecules?
Which of the following best describes the function of CD1 molecules?
Which of the following statements best describes the role of invariant chain (Ii) in MHC class II antigen processing?
Which of the following statements best describes the role of invariant chain (Ii) in MHC class II antigen processing?
A patient has a genetic defect that results in non-functional beta-2 microglobulin. What is the MOST likely immunological consequence?
A patient has a genetic defect that results in non-functional beta-2 microglobulin. What is the MOST likely immunological consequence?
A researcher discovers a new molecule that enhances the stability of peptide-MHC class I complexes on the cell surface. This molecule would MOST likely enhance:
A researcher discovers a new molecule that enhances the stability of peptide-MHC class I complexes on the cell surface. This molecule would MOST likely enhance:
What is the role of the enzyme Cathepsin S in MHC Class II antigen processing?
What is the role of the enzyme Cathepsin S in MHC Class II antigen processing?
Which of the following is the MOST likely outcome if a cell lacked the ability to express MHC molecules?
Which of the following is the MOST likely outcome if a cell lacked the ability to express MHC molecules?
A researcher is studying the immune response to a novel intracellular bacterium. They observe that CD8+ T cells are activated, but MHC class I expression is abnormally low. Which of the following proteins might the bacterium be targeting to suppress the immune response?
A researcher is studying the immune response to a novel intracellular bacterium. They observe that CD8+ T cells are activated, but MHC class I expression is abnormally low. Which of the following proteins might the bacterium be targeting to suppress the immune response?
What is the significance of linkage disequilibrium in the context of HLA genes?
What is the significance of linkage disequilibrium in the context of HLA genes?
A mutation in the gene encoding for ERAP1 results in a loss of function. Which of the following would be MOST directly affected by this mutation?
A mutation in the gene encoding for ERAP1 results in a loss of function. Which of the following would be MOST directly affected by this mutation?
A patient with a rare genetic disorder has a complete absence of MHC class II expression. Which of the following immune cell interactions would be MOST directly impaired in this individual?
A patient with a rare genetic disorder has a complete absence of MHC class II expression. Which of the following immune cell interactions would be MOST directly impaired in this individual?
A researcher is investigating a new viral protein that interferes with antigen presentation. They find that this protein prevents the association of B2-microglobulin with MHC class I heavy chain. What is the MOST likely consequence of this interference?
A researcher is investigating a new viral protein that interferes with antigen presentation. They find that this protein prevents the association of B2-microglobulin with MHC class I heavy chain. What is the MOST likely consequence of this interference?
A therapeutic strategy aims to enhance the immune response against tumor cells by increasing the expression of MHC class I molecules on the tumor cell surface. Which of the following cytokines would be MOST appropriate to use for this purpose?
A therapeutic strategy aims to enhance the immune response against tumor cells by increasing the expression of MHC class I molecules on the tumor cell surface. Which of the following cytokines would be MOST appropriate to use for this purpose?
A patient presents with a mutation affecting the function of HLA-DO. Understanding its role, what downstream effect would you predict?
A patient presents with a mutation affecting the function of HLA-DO. Understanding its role, what downstream effect would you predict?
A researcher is studying antigen processing in a novel cell type and observes peptide loading onto MHC class I molecules in the absence of TAP. Which of the following pathways is MOST likely responsible for antigen presentation in this scenario?
A researcher is studying antigen processing in a novel cell type and observes peptide loading onto MHC class I molecules in the absence of TAP. Which of the following pathways is MOST likely responsible for antigen presentation in this scenario?
Consider a scenario where a virus has evolved a mechanism to downregulate the expression of both MHC class I and MIC molecules on infected cells. This strategy would MOST directly impair which two immune cell populations?
Consider a scenario where a virus has evolved a mechanism to downregulate the expression of both MHC class I and MIC molecules on infected cells. This strategy would MOST directly impair which two immune cell populations?
A researcher is trying to design a vaccine that will elicit a strong CD8+ T cell response against a specific tumor antigen. Which of the following strategies would be MOST effective in ensuring that the tumor antigen is efficiently presented on MHC class I molecules?
A researcher is trying to design a vaccine that will elicit a strong CD8+ T cell response against a specific tumor antigen. Which of the following strategies would be MOST effective in ensuring that the tumor antigen is efficiently presented on MHC class I molecules?
A new drug is developed that specifically blocks the function of calnexin. Which of the following processes would be MOST directly inhibited by this drug?
A new drug is developed that specifically blocks the function of calnexin. Which of the following processes would be MOST directly inhibited by this drug?
If a patient exhibits a chronic infection resulting from the inability to properly clear intracellular pathogens due to a defect in CD40L, which of the following professional APC cell types, responsible for bridging innate and adaptive immunity, would MOST directly contribute to the observed symptoms?
If a patient exhibits a chronic infection resulting from the inability to properly clear intracellular pathogens due to a defect in CD40L, which of the following professional APC cell types, responsible for bridging innate and adaptive immunity, would MOST directly contribute to the observed symptoms?
Consider an individual lacking functional non-classical MHC Ib molecule HLA-G. Which of the following immune responses would MOST likely be affected in this individual?
Consider an individual lacking functional non-classical MHC Ib molecule HLA-G. Which of the following immune responses would MOST likely be affected in this individual?
Which of the following is an example of an alloantigen?
Which of the following is an example of an alloantigen?
What is the MAIN function of the invariant chain (Ii) in MHC class II antigen processing?
What is the MAIN function of the invariant chain (Ii) in MHC class II antigen processing?
Which of the following BEST describes the term 'MHC restriction'?
Which of the following BEST describes the term 'MHC restriction'?
Why is polymorphism in MHC genes important for population survival?
Why is polymorphism in MHC genes important for population survival?
Which of the following is the MOST likely function of non-classical MHC class Ib molecules?
Which of the following is the MOST likely function of non-classical MHC class Ib molecules?
A researcher is studying a novel viral protein that inhibits the function of ERAP. Which of the following processes would be MOST directly affected?
A researcher is studying a novel viral protein that inhibits the function of ERAP. Which of the following processes would be MOST directly affected?
A cell is unable to acidify its endosomes. Which of the following processes will be MOST affected?
A cell is unable to acidify its endosomes. Which of the following processes will be MOST affected?
A researcher discovers a new molecule that enhances the stability of peptide-MHC class I complexes on the cell surface, but only for certain viral antigens. This molecule would MOST likely enhance:
A researcher discovers a new molecule that enhances the stability of peptide-MHC class I complexes on the cell surface, but only for certain viral antigens. This molecule would MOST likely enhance:
How does cross-dressing MOST directly contribute to CD8+ T cell activation?
How does cross-dressing MOST directly contribute to CD8+ T cell activation?
In a scenario where a virus downregulates both MHC class I and MIC molecules on infected cells, which two immune cell populations would be MOST directly impaired?
In a scenario where a virus downregulates both MHC class I and MIC molecules on infected cells, which two immune cell populations would be MOST directly impaired?
Given the known promiscuity of MHC class II molecules, how does the immune system prevent excessive cross-reactivity that could lead to widespread autoimmunity?
Given the known promiscuity of MHC class II molecules, how does the immune system prevent excessive cross-reactivity that could lead to widespread autoimmunity?
In the context of tumor immunology, if cancer cells downregulate MHC class I expression to evade CD8+ T cell recognition, what compensatory mechanism might they exploit to simultaneously avoid NK cell-mediated killing?
In the context of tumor immunology, if cancer cells downregulate MHC class I expression to evade CD8+ T cell recognition, what compensatory mechanism might they exploit to simultaneously avoid NK cell-mediated killing?
An experimental drug inhibits the function of cathepsin S specifically within dendritic cells. What downstream effect would MOST directly compromise the adaptive immune response?
An experimental drug inhibits the function of cathepsin S specifically within dendritic cells. What downstream effect would MOST directly compromise the adaptive immune response?
A hypothetical virus inhibits ERAP1 and TAP function in infected cells. What combined immunological consequence would MOST significantly impair the host's ability to mount an effective CD8+ T cell response?
A hypothetical virus inhibits ERAP1 and TAP function in infected cells. What combined immunological consequence would MOST significantly impair the host's ability to mount an effective CD8+ T cell response?
If a novel pathogen evolved to disrupt the interaction between HLA-DM and MHC class II molecules, but only in B cells, what specific immunological defect would MOST likely manifest?
If a novel pathogen evolved to disrupt the interaction between HLA-DM and MHC class II molecules, but only in B cells, what specific immunological defect would MOST likely manifest?
In a scenario where a cell expresses functional MHC class I molecules, but is completely deficient in beta-2 microglobulin, what cellular interaction would be MOST directly affected?
In a scenario where a cell expresses functional MHC class I molecules, but is completely deficient in beta-2 microglobulin, what cellular interaction would be MOST directly affected?
Given the role of autophagy in antigen presentation, what is the MOST likely mechanism by which a tumor cell might exploit defects in autophagy to evade immune surveillance by T cells?
Given the role of autophagy in antigen presentation, what is the MOST likely mechanism by which a tumor cell might exploit defects in autophagy to evade immune surveillance by T cells?
Consider a novel therapeutic strategy that involves engineering dendritic cells to express a constitutively active form of ERAP1. What is the MOST likely outcome of this modification on antigen presentation?
Consider a novel therapeutic strategy that involves engineering dendritic cells to express a constitutively active form of ERAP1. What is the MOST likely outcome of this modification on antigen presentation?
A new viral strain expresses a protein that directly binds and inhibits the function of tapasin. What is the MOST likely mechanism by which this viral protein interferes with antigen presentation?
A new viral strain expresses a protein that directly binds and inhibits the function of tapasin. What is the MOST likely mechanism by which this viral protein interferes with antigen presentation?
In the context of MHC genetics, what evolutionary advantage is MOST directly conferred by the high degree of polymorphism observed in HLA genes within a population?
In the context of MHC genetics, what evolutionary advantage is MOST directly conferred by the high degree of polymorphism observed in HLA genes within a population?
How does the phenomenon of 'cross-dressing' MOST directly enhance the priming of naive CD8+ T cells during a viral infection?
How does the phenomenon of 'cross-dressing' MOST directly enhance the priming of naive CD8+ T cells during a viral infection?
If a patient has a mutation that results in the complete absence of functional HLA-DO, what specific aspect of MHC class II antigen presentation would be MOST affected?
If a patient has a mutation that results in the complete absence of functional HLA-DO, what specific aspect of MHC class II antigen presentation would be MOST affected?
In a scenario where a virus significantly downregulates the expression of both MHC class I and MIC molecules on infected cells, which two immune cell populations would be MOST directly impaired in their ability to respond to the infection?
In a scenario where a virus significantly downregulates the expression of both MHC class I and MIC molecules on infected cells, which two immune cell populations would be MOST directly impaired in their ability to respond to the infection?
To elicit a robust CD8+ T cell response against a specific tumor antigen, which of the following vaccine strategies would be MOST effective in ensuring efficient presentation on MHC class I molecules?
To elicit a robust CD8+ T cell response against a specific tumor antigen, which of the following vaccine strategies would be MOST effective in ensuring efficient presentation on MHC class I molecules?
If a new drug specifically blocks the function of calnexin, which of the following processes involved in MHC class I antigen presentation would MOST immediately be inhibited?
If a new drug specifically blocks the function of calnexin, which of the following processes involved in MHC class I antigen presentation would MOST immediately be inhibited?
What is the MOST likely functional consequence of a mutation affecting the peptide-binding groove of an MHC class I molecule, rendering it unable to bind any peptides?
What is the MOST likely functional consequence of a mutation affecting the peptide-binding groove of an MHC class I molecule, rendering it unable to bind any peptides?
Consider an individual with a genetic defect resulting in non-functional non-classical MHC Ib molecule HLA-G. Which of the following immune responses would MOST likely be affected?
Consider an individual with a genetic defect resulting in non-functional non-classical MHC Ib molecule HLA-G. Which of the following immune responses would MOST likely be affected?
Within the framework of adaptive immunity, what is the MOST accurate interpretation of the term 'MHC restriction' in the context of T cell activation?
Within the framework of adaptive immunity, what is the MOST accurate interpretation of the term 'MHC restriction' in the context of T cell activation?
A researcher is investigating a novel compound that selectively enhances the stability of peptide-MHC class I complexes on the cell surface, but only for specific viral antigens. This enhancement would MOST directly amplify which of the following immune functions?
A researcher is investigating a novel compound that selectively enhances the stability of peptide-MHC class I complexes on the cell surface, but only for specific viral antigens. This enhancement would MOST directly amplify which of the following immune functions?
A cell is genetically engineered to be completely unable to acidify its endosomes. Which of the following immunological processes will be MOST directly impaired as a result?
A cell is genetically engineered to be completely unable to acidify its endosomes. Which of the following immunological processes will be MOST directly impaired as a result?
Consider a newly identified pathogen that triggers a potent inflammatory response, leading to increased expression of both MHC class I and class II molecules. What is the MOST likely underlying mechanism driving this upregulation?
Consider a newly identified pathogen that triggers a potent inflammatory response, leading to increased expression of both MHC class I and class II molecules. What is the MOST likely underlying mechanism driving this upregulation?
If a novel immunotherapeutic agent selectively ablates HLA-DO function within antigen-presenting cells, but without affecting HLA-DM activity, which of the following immunological consequences is MOST likely to occur?
If a novel immunotherapeutic agent selectively ablates HLA-DO function within antigen-presenting cells, but without affecting HLA-DM activity, which of the following immunological consequences is MOST likely to occur?
A research team engineers a recombinant virus expressing a novel protein that competitively binds to the peptide-loading groove of MHC class I molecules with extremely high affinity, preventing the binding of endogenous peptides. Which of the following strategies would MOST effectively restore MHC class I-mediated antigen presentation?
A research team engineers a recombinant virus expressing a novel protein that competitively binds to the peptide-loading groove of MHC class I molecules with extremely high affinity, preventing the binding of endogenous peptides. Which of the following strategies would MOST effectively restore MHC class I-mediated antigen presentation?
In a hypothetical scenario, a population of antigen-presenting cells is engineered to express a mutant form of tapasin that retains its ability to bind MHC class I molecules and other components of the peptide-loading complex (PLC) but is incapable of undergoing conformational changes required for optimal peptide loading. What is the MOST likely immunological consequence?
In a hypothetical scenario, a population of antigen-presenting cells is engineered to express a mutant form of tapasin that retains its ability to bind MHC class I molecules and other components of the peptide-loading complex (PLC) but is incapable of undergoing conformational changes required for optimal peptide loading. What is the MOST likely immunological consequence?
A researcher is investigating a novel mechanism of immune evasion employed by a specific intracellular bacterium. They discover that the bacterium secretes a protein that selectively inhibits the function of Rubicon-like autophagy regulator (RUBCN) specifically within dendritic cells (DCs). What is the MOST likely consequence of this bacterial interference on antigen presentation and adaptive immunity?
A researcher is investigating a novel mechanism of immune evasion employed by a specific intracellular bacterium. They discover that the bacterium secretes a protein that selectively inhibits the function of Rubicon-like autophagy regulator (RUBCN) specifically within dendritic cells (DCs). What is the MOST likely consequence of this bacterial interference on antigen presentation and adaptive immunity?
A research scientist generates a line of mice with a targeted mutation in the gene encoding cathepsin S, specifically designed to abolish its enzymatic activity only within dendritic cells (DCs). Following immunization with a protein antigen, which of the following outcomes is MOST likely observed in these mice compared to wild-type controls?
A research scientist generates a line of mice with a targeted mutation in the gene encoding cathepsin S, specifically designed to abolish its enzymatic activity only within dendritic cells (DCs). Following immunization with a protein antigen, which of the following outcomes is MOST likely observed in these mice compared to wild-type controls?
A novel viral strain exhibits a unique immune evasion strategy by expressing a modified ubiquitin ligase that specifically targets and ubiquitinates newly synthesized MHC class II molecules within antigen-presenting cells, leading to their proteasomal degradation prior to peptide loading. Which of the following cellular compartments would exhibit the MOST significant accumulation of ubiquitinated MHC class II molecules in these cells?
A novel viral strain exhibits a unique immune evasion strategy by expressing a modified ubiquitin ligase that specifically targets and ubiquitinates newly synthesized MHC class II molecules within antigen-presenting cells, leading to their proteasomal degradation prior to peptide loading. Which of the following cellular compartments would exhibit the MOST significant accumulation of ubiquitinated MHC class II molecules in these cells?
Consider a scenario in which a research team discovers a novel variant of HLA-DM that exhibits a significantly enhanced affinity for binding CLIP-MHC class II complexes but is severely impaired in its ability to release once peptide loading is complete. What is the MOST likely immunological consequence of this altered HLA-DM function?
Consider a scenario in which a research team discovers a novel variant of HLA-DM that exhibits a significantly enhanced affinity for binding CLIP-MHC class II complexes but is severely impaired in its ability to release once peptide loading is complete. What is the MOST likely immunological consequence of this altered HLA-DM function?
A research group generates a mutant cell line lacking the ER-resident protein RTN4 (Reticulon 4), known for its role in shaping ER morphology. Considering RTN4's function, which aspect of MHC class I antigen presentation would be MOST directly affected in these cells?
A research group generates a mutant cell line lacking the ER-resident protein RTN4 (Reticulon 4), known for its role in shaping ER morphology. Considering RTN4's function, which aspect of MHC class I antigen presentation would be MOST directly affected in these cells?
Following exposure to a novel environmental toxin, a patient exhibits a selective defect in the expression of non-classical MHC class Ib molecule HLA-G. Given the known functions of HLA-G, which of the following immunological consequences would be MOST likely observed in this patient?
Following exposure to a novel environmental toxin, a patient exhibits a selective defect in the expression of non-classical MHC class Ib molecule HLA-G. Given the known functions of HLA-G, which of the following immunological consequences would be MOST likely observed in this patient?
In a study analyzing the consequences of interallelic conversion within the MHC locus, researchers identify a novel recombinant allele exhibiting a mosaic structure derived from two distinct HLA-B allotypes. This recombinant allele displays a unique peptide-binding motif characterized by enhanced affinity for peptides containing a specific non-canonical amino acid. What is the MOST likely functional consequence of this novel peptide-binding specificity?
In a study analyzing the consequences of interallelic conversion within the MHC locus, researchers identify a novel recombinant allele exhibiting a mosaic structure derived from two distinct HLA-B allotypes. This recombinant allele displays a unique peptide-binding motif characterized by enhanced affinity for peptides containing a specific non-canonical amino acid. What is the MOST likely functional consequence of this novel peptide-binding specificity?
Flashcards
Professional APCs
Professional APCs
B cells, macrophages, and dendritic cells; dendritic cells are the most potent.
MHC Class I vs. II
MHC Class I vs. II
MHC class I presents endogenous antigens to CD8+ T cells, while MHC class II presents exogenous antigens to CD4+ T cells.
Types of Endogenous Antigens
Types of Endogenous Antigens
Self-antigen, tissue-specific antigen, intracellular pathogens
Exogenous Antigens
Exogenous Antigens
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Antigen Presentation
Antigen Presentation
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Dendritic Cells (DCs)
Dendritic Cells (DCs)
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DC Antigen Processing Steps
DC Antigen Processing Steps
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MHC/HLA
MHC/HLA
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CD8+ T cells and MHC Class I
CD8+ T cells and MHC Class I
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CD4+ T cells and MHC Class II
CD4+ T cells and MHC Class II
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Class I Presentation
Class I Presentation
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Class II Presentation
Class II Presentation
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Endogenous Antigens
Endogenous Antigens
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Viral Antigen Processing
Viral Antigen Processing
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Cytosolic Pathway (Cross-Presentation)
Cytosolic Pathway (Cross-Presentation)
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Vacuole Pathway (Cross-Presentation)
Vacuole Pathway (Cross-Presentation)
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Cross-dressing
Cross-dressing
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MHC Class I Stabilization
MHC Class I Stabilization
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TAP (Transporter associated with Ag Processing)
TAP (Transporter associated with Ag Processing)
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HLA-E Function
HLA-E Function
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MICA/MICB Activation
MICA/MICB Activation
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T Cell Activation Requirement
T Cell Activation Requirement
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Antigen pathway in Dendritic cells
Antigen pathway in Dendritic cells
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Human MHC name
Human MHC name
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HLA polymorphism
HLA polymorphism
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What is MHC Restriction?
What is MHC Restriction?
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Constitutive Proteasome
Constitutive Proteasome
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Immunoproteasome
Immunoproteasome
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Function of ERAP
Function of ERAP
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MHC Class II Vesicle
MHC Class II Vesicle
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Function of Cathepsin S
Function of Cathepsin S
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Action of HLA-DM
Action of HLA-DM
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Infection-Antigen processing Relationship
Infection-Antigen processing Relationship
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Interallelic conversion result
Interallelic conversion result
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Linkage Disequilibrium
Linkage Disequilibrium
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MHC allotypes mutations' effect
MHC allotypes mutations' effect
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HLA-F stimulation
HLA-F stimulation
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MHC peptide interaction
MHC peptide interaction
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Study Notes
- T cells get activated by antigens presented on MHC class I (CD8+ T cells) and II molecules (CD4+ T) with professional antigen presenting cells (B cells, macrophages, dendritic cells).
- Dendritic cells are the most potent APC.
- Endogenous antigens (8-11 aa) load onto MHC class I molecules with ERAP, proteasome, TAP, calnexin, Erp57-tapasin-calreticulin.
- Exogenous antigens (10-30 aa) load onto MHC class II molecules with invariant chain, CLIP, HLA-DM.
- Cross-presentation of antigens places the antigen on MHC I while originating from exogenous sources by transport or degradation in MHC I-positive phagosomes.
- CD8+ T cells can also be stimulated by LN resident DC by obtaining Ag-loaded MHC I molecules from migrating DC using cross-dressing.
- MHC class I (HLA-A, B, C) and MHC class II (HLA-DP, -DQ, -DR) have varied polymorphism, have pockets for peptide anchor residues to bind, and are codominantly expressed.
- T cells are MHC-restricted in only responding to antigens displayed on self MHC.
- Nonclassical MHC molecules (HLA-E, -F, -G and MICs) help with NK and CTL cytotoxicity through activation or inhibition.
- CD1 is structurally similar to MHC class I while functionally similar to MHC class II.
Types of Antigens
- Endogenous antigens are the body's own cellular components or intracellular pathogens:
- Autoantigens are self-antigens.
- Alloantigens are tissue-specific antigens, such as ABO and HLA.
- Intracellular pathogens include viruses, intracellular bacteria, and parasites.
- Exogenous antigens enter the body or system and freely circulate, getting trapped by APCs with phagocytosis.
Antigen Recognition
- The body relies on cell surface receptors to recognize antigens so it can respond to them
- Next focus will be on the mechanisms underlying construction of both the B cell receptor (BCR) and T cell receptor (TCR)
Dendritic Cells
- Dendritic cells (DC) function specifically to capture/process antigens and display them to activate CD4+ and CD8+ T cells.
- DC capture antigens and process them into small peptides
- These peptides then bind to Major Histocompatibility Complexes (MHC).
- Dendritic cells act as presenters of these antigens to activate T cells
- Dendritic cells support the functions of other cells like NK cells
Professional APCs
- Includes dendritic cells, macrophages, and B cells.
- Dendritic cells are the principle inducers of T cell-independent immune responses
- Macrophages phagocytose microbes, process antigens, and display them on MHC to T cells
- T cells are already activated in macrophages
- B cells ingest antigens and display them on MHC to CD4+ T helper cells in lymphoid tissues to generate humoral immunity (antibody response).
Antigen Loading
- Dendritic cells capture proteins, process them to create peptides, load them onto MHC, and eventually display the peptide-MHC complex.
MHC Molecules
- Major histocompatibility complex types I and II are also referred to as human leukocyte antigen (HLA).
- Class I is found on all nucleated cells.
- Class II is found on professional APCs like dendritic cells, macrophage, B lymphocytes, and some thymocytes.
- Class I and II molecules constitutively express MHC
MHC Class I
- CD8+ T cells recognize peptides when they’re bound to MHC class I molecules.
- CD8 molecules can only bind to MHC class I molecules.
- All nucleated cells can process proteins to load peptides onto MHC class I molecules.
MHC class II
- CD4+ T cells recognize peptides when bound to MHC class II molecules.
- CD4 molecules can only bind to MHC class II.
- Only professional APC and some thymic cells can process proteins and load peptides onto MHC class II molecules.
Two Pathways
- Each pathway activates the T lymphocyte best for a specific antigen
- Endogenous pathogens and self antigens involve presentation via Class I MHC/HLA to CD8+ T cells.
- Exogenous pathogens undergo Class II MHC/HLA presentation to CD4+ T cells.
- During infections, IL-1, IL-6, and TNF-a production may promote a fever to enhance both MHC-TCR interactions and antigen processing.
Cytosolic Proteins
- Proteins in the cell cytosol are cut into peptides by the proteasome and enter the ER
- Proteasomes are active in cells that do not have infections
- They degrade damaged and poorly folded proteins that are no longer needed or not functional
- Immunoproteosomes are induced by IFN-γ and produces peptides that easily bind to MHC class I molecules
- TAP then transports peptides generated by the immunoproteasome
TAP Transport
- TAP functions by transporting peptides across the ER membrane into the ER lumen using ATP
- The rapid transport in immunoproteosomes can cause TAP deficiency
- TAP deficiency results in chronic respiratory infections from birth and minimal CD8+ T cell responses
MHC Class I Assembly
- MHC class I molecules construct adjacent to peptide entry in the ER
- Alpha and Beta-2 microglobulin chains produce in the ER
- Calnexin stabilizes construction of the MHC I alpha chain
- When the Beta2m binds the alpha chain is displaced
- MHC I molecules associate with TAP with the aid of ERp57-Tapasin-Calreticulin
- TAP-transported peptides then bind to the groove of the MHC I molecule
- Peptide binding stabilizes the MHC I complex, releasing Tapasin
- The signal peptide then transports to the loaded MHC I molecule to the cell surface.
- ERAP removes the N-terminal amino acids to give a peptide with 8-10 residues
MHC Class II
- Endosomes and Phagosomes acidify and degrade antigens
- Extracellular materials continue being uptaken by endocytic vesicles
- Endosomes and phagosomes mature while new vesicles fuse and provide degradation machinery, including vacuolar ATPase and proteases.
- Phagosomes fuse with lysosomes to generate phagolysosomes where proteins are unfolded into peptides
- Invariant chains stabilize and direct MHC class II molecules to vesicles
- Cathepsin S and proteases cleave invariant chains
- The remaining fragment that bounded to the peptide binding site is named CLIP (Class II-associated invariant chain peptide)
- Acidification from endosomes and phagolysosomes yields peptides that can displace CLIP.
- MHC class II molecules exit the MIIC fused vesicle and goes to the cell surface when loaded with the peptide in a transport vesicle
- HLA-DM removes CLIP to help peptides access/bind to MHC II
- This binding triggers HLA-Dm release, HLA-DO blocks this to steady Ag presentation
- IFN-y increases the expression of HLA-DM and Ag presentation
Additional Mechanisms
- Influenza antigens are delivered to lymph nodes to present T cells
- Ags loaded onto MHC class I molecules are shown to be derived endogenouly
- Here the Ags from an exogenous source phagocytize the viruses
- Infected cells and viral picked up by APC
Cross-presentation
- Antigens presented include DC expressing MHC molecules
- APCs use these pathways:
- Cytosolic Pathway: DC phagosomes insert membrane-spanning pumps where degraded proteins are transported and loaded onto MHC I
- Vacuole Pathway: Class I molecules delivered to phgolslysome with transport vescile
Cross-dressing
- Involves transfer of MHC-peptide from a migrating DC to LN resident DC:
- Via direct presentation where cells sendogenous antigen undergo endogenous MHC
- Via cross-presentation with cells that exogenous antigen that have had endogenous MHCI
What are some features of MHC
- The MHC is a class of proteins that can display many different peptides
Major Histocompatibility Complexes
- In humans, the MHC is termed Human Leukocyte Antigens (HLA)
HLA class I molecules
- HLA molecules present to stimulate antigens to activate CD8+ T cells
- HLA molecules have genes that encodes in the region of the alpha chain:
- These genes are polymorphic or have may forms which causes HLA polymorphism
- One alpha chain plus one B2-microglobulin composes the I molecule
- Interferons can increase in expression of Alpha and B2-macroglobulin and TAP
HLA class II molecules
- Help by presenting peptide Antigens to activate CD4+ T cells
- Made out of an alpha and beta chain and Expression can be changed with IFN-γ for HLA-DM molecules, HLA-DP, HLA-DQ, HLA-DR, and the invariant chan
HLA class II polymorphism
HLA-DP: single alpha(DPA1) and beta(DPB1) chain genes HLA-DQ:Two sets of alpha and beta chain genes HLA-DR: Single, alpha chain gene
Inheritance of HLA Genes
- Haplotypes combine HLA alleles on a chromosome:
- Can have an inherited diversity cause by numbers of gene families and through genetic polymorphism (multiple alternative or allelic forms of gene)
Mechanism Underlying HLA Genetic Polymorphism
- Point mutations can distinguish MHC and the diversity can have an interallelic conversion where allele gets replaced by homologous section
Nonclassical MHC Classs lb Molecules
- HLA-E molecules inhibit and stimulate certain NK cells when binding to peptides with certain inhibitors
MIC
- MHC class 1 relation, can interact with NK cells to secreted cytokines, induced by stress signals when certain proteins are overriden
Presentation of Nonproteins
- CD! and MHC class 1, can express lipid linked molecules
- There are 5 genes and molecules display few variants
Polymorphism in MHC
- The binding grooves permit several different peptides
- High amino acid variability happens if binding to nearby grooves
Recognition of Ag
- Happens by contacting amino acids with receptors
- T cell doesn't know antigen on non self cause doesn't recognize MHC which causes restriction
MHC Peptide Binding
- Each MHC molecule can only display one peptide at a time
- Peptides are acquired during intracellular assembly
- There is broad specificity as many different peptides can bind to the same MHC molecule
- There is a very slow off rate as the MHC molecule displays the bound peptide for long enough to be located and recognized by T cells
- Stable expression requires a peptide
- MHC only bind to restricted T cells rather than a broader spectrum
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