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Questions and Answers
What is the primary goal of assays used for detecting controlled substances in employees?
What is the primary goal of assays used for detecting controlled substances in employees?
How do environmental conditions like pH and temperature affect assay performance?
How do environmental conditions like pH and temperature affect assay performance?
Which technique is mentioned as a method for detecting tumor cells early in infection?
Which technique is mentioned as a method for detecting tumor cells early in infection?
Why is validating measurements in assays important?
Why is validating measurements in assays important?
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What characteristic is essential for assays detecting proteins that are physically interacting?
What characteristic is essential for assays detecting proteins that are physically interacting?
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What is the significance of detecting a few tumor cells in a tissue?
What is the significance of detecting a few tumor cells in a tissue?
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What is a key factor when performing assays under varying experimental conditions?
What is a key factor when performing assays under varying experimental conditions?
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What role do fluorescent antibodies play in assays?
What role do fluorescent antibodies play in assays?
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What effect can bacterial contamination have on animal cell cultures?
What effect can bacterial contamination have on animal cell cultures?
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What is a crucial step to ensure the reliability of animal or human subjects in a study?
What is a crucial step to ensure the reliability of animal or human subjects in a study?
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What is a consequence of improper culture conditions for cell differentiation?
What is a consequence of improper culture conditions for cell differentiation?
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Which of the following is true about protein growth factors?
Which of the following is true about protein growth factors?
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Why is it necessary to periodically validate yeast and bacterial strains?
Why is it necessary to periodically validate yeast and bacterial strains?
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What can be a result of operator mistakes with mouse lines?
What can be a result of operator mistakes with mouse lines?
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What must be done if instability arises in a yeast or bacterial strain?
What must be done if instability arises in a yeast or bacterial strain?
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How can storage conditions affect growth factors?
How can storage conditions affect growth factors?
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What is the primary goal of enhancing the signal over noise in measurement devices?
What is the primary goal of enhancing the signal over noise in measurement devices?
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How can the stability of a system be best ensured when conducting measurements?
How can the stability of a system be best ensured when conducting measurements?
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What is a key characteristic of primary cultures harvested from humans or animals?
What is a key characteristic of primary cultures harvested from humans or animals?
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What must be determined to enhance the predictive nature of experimental outcomes using primary cultures?
What must be determined to enhance the predictive nature of experimental outcomes using primary cultures?
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Which aspect is crucial for achieving fidelity in scientific measurements?
Which aspect is crucial for achieving fidelity in scientific measurements?
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What is a consequence of natural variations in measurements?
What is a consequence of natural variations in measurements?
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What is essential to consider regarding the timing of experiments with primary cultures?
What is essential to consider regarding the timing of experiments with primary cultures?
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What is a common misconception about the measurement of system stability?
What is a common misconception about the measurement of system stability?
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What is the primary method used to determine the sensitivity of an antibody?
What is the primary method used to determine the sensitivity of an antibody?
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Which of the following statements regarding sensitivity validation is correct?
Which of the following statements regarding sensitivity validation is correct?
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Why are low-level expressed gene products challenging to detect?
Why are low-level expressed gene products challenging to detect?
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In the context of early detection, which factor is crucial for timely identification of issues like tumors?
In the context of early detection, which factor is crucial for timely identification of issues like tumors?
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What characteristic of masking agents is relevant in the detection of controlled substances?
What characteristic of masking agents is relevant in the detection of controlled substances?
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Which of the following statements is true regarding RT-PCR coupled DNA microarrays?
Which of the following statements is true regarding RT-PCR coupled DNA microarrays?
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Which method is noted as more sensitive than Western blot for detecting proteins?
Which method is noted as more sensitive than Western blot for detecting proteins?
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What is the limitation of determining the original concentration of a protein in sensitivity validation?
What is the limitation of determining the original concentration of a protein in sensitivity validation?
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What could happen if IGF-1 concentrations exceed the physiologic range?
What could happen if IGF-1 concentrations exceed the physiologic range?
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What is the purpose of using siRNA technology in the context of mTOR?
What is the purpose of using siRNA technology in the context of mTOR?
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How can one quantitate the effects of siRNA on mTOR mRNA?
How can one quantitate the effects of siRNA on mTOR mRNA?
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What does the induction of Akt phosphorylation by IGF-1 indicate regarding administration frequency?
What does the induction of Akt phosphorylation by IGF-1 indicate regarding administration frequency?
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What is a crucial aspect of the dose response in drug administration?
What is a crucial aspect of the dose response in drug administration?
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What role does rapamycin play in the context of mTOR signaling?
What role does rapamycin play in the context of mTOR signaling?
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What does exceeding the physiologic range of IGF-1 suggest about the treatment?
What does exceeding the physiologic range of IGF-1 suggest about the treatment?
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Which of the following is a reason to perform a time course in administration frequency?
Which of the following is a reason to perform a time course in administration frequency?
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What is a critical consideration when weighing the safety of experimental procedures involving animals or humans?
What is a critical consideration when weighing the safety of experimental procedures involving animals or humans?
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Which equipment is considered essential for the safety of investigators during experiments?
Which equipment is considered essential for the safety of investigators during experiments?
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What is a potential risk associated with genetic modification in experimentation?
What is a potential risk associated with genetic modification in experimentation?
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What type of safety concern is highlighted regarding the wider community with respect to experimentation?
What type of safety concern is highlighted regarding the wider community with respect to experimentation?
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In the context of safety to animal subjects, what is a critical aspect of ethical experimentation?
In the context of safety to animal subjects, what is a critical aspect of ethical experimentation?
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What is the purpose of ethics boards in the context of experimental research?
What is the purpose of ethics boards in the context of experimental research?
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What is indicated as a critical safety protocol for investigators when using chemicals in experiments?
What is indicated as a critical safety protocol for investigators when using chemicals in experiments?
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What is a key factor to consider when using experimental conditions for chemical exposure?
What is a key factor to consider when using experimental conditions for chemical exposure?
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Flashcards
Antibody Sensitivity
Antibody Sensitivity
The ability of an antibody to detect a protein at low concentrations in a sample.
Sensitivity Assay
Sensitivity Assay
An experimental method, often involving serial dilutions, to determine the lowest detectable concentration of a protein using an antibody.
Low-level expressed genes
Low-level expressed genes
Genes that produce very small amounts of their corresponding protein.
RT-PCR-coupled DNA microarrays
RT-PCR-coupled DNA microarrays
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Detecting controlled substances
Detecting controlled substances
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Early tumor/virus detection
Early tumor/virus detection
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Western Blot
Western Blot
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ELISA
ELISA
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Tumor cell detection sensitivity
Tumor cell detection sensitivity
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Assay sensitivity
Assay sensitivity
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Drug test sensitivity
Drug test sensitivity
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Co-location of proteins
Co-location of proteins
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Assay sensitivity & conditions
Assay sensitivity & conditions
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Sensitivity in measuring changes
Sensitivity in measuring changes
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Experimental validation
Experimental validation
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Sensitivity and specificity
Sensitivity and specificity
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Measuring Device Sensitivity
Measuring Device Sensitivity
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Signal-to-Noise Ratio
Signal-to-Noise Ratio
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System Stability
System Stability
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Fidelity/Stability
Fidelity/Stability
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Primary Culture
Primary Culture
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Immortal Cells
Immortal Cells
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Senescence
Senescence
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Predictive Experiments
Predictive Experiments
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Maintaining culture conditions
Maintaining culture conditions
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Cell contamination (animal cells)
Cell contamination (animal cells)
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Mouse colony validation
Mouse colony validation
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System degradation (subjects)
System degradation (subjects)
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Yeast/Bacterial strain validation
Yeast/Bacterial strain validation
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Growth factor stability
Growth factor stability
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Cryoprotectants
Cryoprotectants
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Subject reliability
Subject reliability
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Physiologic range of IGF-1
Physiologic range of IGF-1
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Exceeding physiologic range
Exceeding physiologic range
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Dose response
Dose response
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siRNA technology
siRNA technology
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mTOR pathway inhibition
mTOR pathway inhibition
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Frequency of administration
Frequency of administration
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Time course experiment
Time course experiment
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IGF-1 induction of Akt phosphorylation
IGF-1 induction of Akt phosphorylation
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Cumulative Risk
Cumulative Risk
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Lab Safety Equipment
Lab Safety Equipment
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Ethical Research
Ethical Research
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Genetically Modified Organisms
Genetically Modified Organisms
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Field Tests
Field Tests
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Community Safety
Community Safety
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Ethical Considerations
Ethical Considerations
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Safety Before Experimentation
Safety Before Experimentation
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Study Notes
System Validation
- System specificity addresses the ability to measure a desired substance (X) while distinguishing it from interfering substances (Y). Signal-to-noise ratios are represented by positive and negative controls.
- Specificity of detection ensures the method accurately identifies the target substance. Validation is crucial for drawing reliable conclusions from experimental results.
- Methods must be validated to ensure they specifically identify the substance of interest, not other interfering chemicals. A well-established and published assay is required. Lab equipment may limit assay capabilities.
- Measuring the target substance in a sample from the experimental subject confirms exposure and relates the amount measured to the biological effect. Critical elements for system validation.
Antibody Validation
- Antibody specificity is critical, ensuring antibodies bind only the protein or epitope of interest.
- Cross-reactivity can occur if antibodies bind proteins with similar epitopes or domains.
- Antibody specificity is determined by utilizing controls; a negative control experiment confirms the absence of binding to irrelevant tissue.
- If purified protein is available, it can confirm antibody competence to detect the isolated protein.
Perturbation Validation
- Perturbation involves a change in the normal state, ideally resulting in a measurable effect.
- Perturbations need to be validated, ensuring they cause the observed effect and have no other unintended consequences.
- Validation methods include using multiple independent reagents that affect the same molecule or controlling for changes in pH, temperature, and concentrations, to test the target of a perturbation.
- Validation addresses whether the measured effects are specific to the perturbation or result from other factors.
Antibody/Reagent Sensitivity
- Sensitivity is determined by serial dilutions of the protein, detecting the minimum detectable concentration.
- Antibodies should be able to correctly detect known physiological, cellular, and tissue concentrations of the target protein.
- Low-copy number gene products, such as hormone receptors and transcription factors, necessitate more sensitive detection methods.
Examples of Perturbations
- Consistent actions of independent molecules that act on the same target validate the specific nature of the perturbation.
- Validating "knockout" experiments needs confirmation that only the intended gene is deleted and not other control elements in the same region.
- Changing experimental parameters (pH, temperature) should be done one at a time to isolate the effects of the perturbation.
- Changes in protein structure (mutations, domain deletions) need verification of effects on functions.
System Stability
- System stability refers to consistent measurements under the same conditions.
- Fidelity involves confirming consistent detection of the targeted molecule.
- Minimizing variability in the measurements improves reliability.
Tissue Culture Examples
- Primary cultures are those directly harvested from animals/humans, having limited replication cycles.
- Culture conditions must be consistent (cell contamination can introduce confounding variables).
Animal or Human Subjects
- Subjects' reactions can be affected by factors like stress, drug use, & diet.
- Researchers must determine how system reliability is impacted by subject conditions.
- Animal/human models for study must be validated, including mutations or distinct genetic profiles.
Equipment Stability
- Mechanical equipment (e.g., micropipettes, microscopes, pH meters, centrifuges) must be consistently maintained and calibrated to ensure accurate measurement.
System Efficacy
- Efficacy (or efficiency) determines the conditions needed to achieve the desired effect.
- Dose-response studies establish appropriate concentrations for an intervention.
Pharmacokinetics (PK) and Pharmacodynamics (PD)
- PK studies the drug's time course in the body involving absorption, distribution, metabolism, and excretion (ADME).
- PD studies the drug's effects in the body.
- Time course/dose-response experiments are often used for establishing PK/PD relationships, and can provide evidence about the ideal concentration and frequency of administration.
Safety Considerations
- Investigator safety requires knowledge of potential hazards and using appropriate safety equipment and procedures.
- Animal/human subject safety requires adherence to ethical guidelines, careful experimental design and validation, and minimizing potential harm.
- Wider community safety considerations include the potential implications of releasing genetically modified organisms or pathogens.
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Description
This quiz covers key concepts in system and antibody validation, focusing on specificity and detection methods. It highlights the importance of accurately measuring substances while distinguishing them from interfering agents. Understanding these principles is essential for reliable experimental results and accurate antibody binding.