Structure of Water and Hydrogen Bonding

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Questions and Answers

What unique property of water allows it to absorb a significant amount of heat before its temperature changes?

  • High heat of vaporization
  • Adhesion
  • Cohesion
  • High specific heat (correct)

Hydrophobic compounds are typically polar and attract water.

False (B)

What are the elements represented by the acronym CHONPS?

Carbon, Hydrogen, Oxygen, Nitrogen, Phosphorus, Sulfur

Water is a __________ compound due to its uneven sharing of electrons between hydrogen and oxygen.

<p>polar</p> Signup and view all the answers

Match the macromolecule with its corresponding elements:

<p>Carbohydrates = CHO Lipids = CHO Proteins = CHON Nucleic Acids = CHONP</p> Signup and view all the answers

What type of bond occurs when electrons are transferred from a metal to a nonmetal?

<p>Ionic bond (A)</p> Signup and view all the answers

Cohesion refers to water's ability to stick to other polar substances.

<p>False (B)</p> Signup and view all the answers

What is dehydration synthesis used for?

<p>To create polymers from monomers by removing water</p> Signup and view all the answers

What type of bond is formed between amino acids in proteins?

<p>Peptide bond (D)</p> Signup and view all the answers

DNA and RNA have the same sugar molecule.

<p>False (B)</p> Signup and view all the answers

What are the main components of the sugar-phosphate backbone in DNA?

<p>Sugar and phosphate groups</p> Signup and view all the answers

The primary structure of a protein is determined by the sequence of _____ acids.

<p>amino</p> Signup and view all the answers

What interactions are impacted by changes in pH and heat when it comes to DNA?

<p>Hydrogen bonds (A)</p> Signup and view all the answers

Match the following terms with their correct descriptions:

<p>Primary structure = Sequence of amino acids in a protein Tertiary structure = Overall 3D shape of a polypeptide Quaternary structure = Multiple proteins forming together Secondary structure = Folding patterns like alpha helices and beta sheets</p> Signup and view all the answers

The outer portion of a DNA double strand contains nitrogenous base pairs.

<p>False (B)</p> Signup and view all the answers

Name two ways carbohydrate monomers can be joined.

<p>In chains or branched chains</p> Signup and view all the answers

What process involves the removal of -H from one monomer and -OH from another to form a bond?

<p>Dehydration synthesis (A)</p> Signup and view all the answers

Hydrolysis is the reverse of dehydration synthesis.

<p>True (A)</p> Signup and view all the answers

What are the three components of nucleotides?

<p>Phosphate group, 5 carbon sugar, nitrogenous base</p> Signup and view all the answers

_____________ are the monomers of proteins and consist of an amine group, carboxyl group, and an R-group.

<p>Amino acids</p> Signup and view all the answers

Which of the following describes unsaturated lipids?

<p>They have a solid bend in their chain due to double bonds. (D)</p> Signup and view all the answers

Match the type of biological macromolecule to its monomer:

<p>Nucleic Acids = Nucleotides Proteins = Amino Acids Carbohydrates = Monosaccharides Lipids = Fatty Acids and Glycerol</p> Signup and view all the answers

Phospholipids are non-polar and do not have any polar sections.

<p>False (B)</p> Signup and view all the answers

What is the basic structure of a DNA molecule?

<p>Double helix with sugar-phosphate backbone and nitrogenous base pairs</p> Signup and view all the answers

Flashcards

What makes water a polar molecule?

Oxygen has a higher electronegativity, pulling electrons closer and creating a partial negative charge on oxygen and a partial positive charge on hydrogen.

What is hydrogen bonding?

A weak attraction between polar molecules that occurs when a slightly positive hydrogen atom from one molecule is attracted to a slightly negative atom (often oxygen or nitrogen) from another molecule.

What is ionic bonding?

A chemical bond that involves the transfer of electrons from a metal to a nonmetal, resulting in the formation of ions and a strong electrostatic attraction.

What is covalent bonding?

A chemical bond that involves the sharing of electrons between two atoms.

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What makes a compound hydrophobic or hydrophilic?

Compounds with many C-H bonds or evenly distributed electrons are hydrophobic (water-repelling). Ionic compounds and polar molecules are hydrophilic (water-loving).

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What are the six elements essential for life?

Carbon, Hydrogen, Oxygen, Nitrogen, Phosphorus, Sulfur.

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How do organisms obtain the six essential elements for life?

Plants get C and O from the air, H and O from water, and the rest from the soil. Animals and fungi get O from air, H and O from water, and all others from food.

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What macromolecules use each of the six essential elements?

Carbs: CHO, Lipids: CHO (phospholipids have P), Proteins: CHON and some S, Nucleic acids: CHONP

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What is dehydration synthesis?

A reaction that forms a bond between two monomers (or adds a monomer to a polymer) by releasing a water molecule. For example, two amino acids can be joined together to form a dipeptide.

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What is hydrolysis?

A reaction that breaks a bond between two monomers (or sections of a polymer) by adding a water molecule. This is the reverse of Dehydration Synthesis.

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What are nucleotides?

The basic building blocks of nucleic acids, such as DNA and RNA. They consist of a phosphate group, a 5-carbon sugar (deoxyribose or ribose), and a nitrogenous base.

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What are amino acids?

The basic building blocks of proteins. They consist of an amino group, a carboxyl group, a central carbon, and a side chain (R-group).

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What are monosaccharides?

The monomers of carbohydrates. They have C, H, and O in a 1:2:1 ratio (or close to it) and contain a carbonyl group (C=O).

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What are fatty acids?

The monomers of lipids. They are long chains of hydrocarbons with a carboxyl group at the end.

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What does the term "anti-parallel" mean in relation to DNA?

The two strands of DNA run in opposite directions, with one strand running 5' to 3' and the other running 3' to 5'.

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What are the base pairing rules in DNA?

In DNA, adenine (A) always pairs with thymine (T) via two hydrogen bonds, and guanine (G) always pairs with cytosine (C) via three hydrogen bonds.

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What is a peptide bond?

The covalent bond between amino acids in proteins, formed between the nitrogen atom of one amino acid and the carbon atom of the next.

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What is the primary structure of a protein?

The linear sequence of amino acids in a protein chain. It's like the alphabet of the protein, determining the building blocks.

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What is the secondary structure of a protein?

The local folding patterns of a protein chain, formed by hydrogen bonding between amino acids. This creates structures like alpha helices and beta sheets.

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What is the tertiary structure of a protein?

The overall 3D shape of a protein, determined by interactions between side chains (R groups) of amino acids. Folding is influenced by hydrophobic/hydrophilic interactions and disulfide bonds.

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What is the quaternary structure of a protein?

The arrangement of multiple polypeptide chains within a protein complex, held together by various bonds. Not all proteins have quaternary structure.

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What is the structure of a DNA double helix?

The sugar-phosphate backbone forms the outside of the DNA double helix, with the nitrogenous bases facing inwards for pairing. Imagine a ladder, with the backbone as the sides and the bases as the rungs.

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How does DNA differ from RNA?

DNA is typically double-stranded, while RNA is typically single-stranded. DNA uses deoxyribose sugar, while RNA uses ribose sugar.

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How do changes in temperature and pH affect DNA and protein structure?

Hydrogen bonds in DNA and proteins are disrupted by heat, causing the molecules to lose their structure (denaturation). Changes in pH also affect hydrogen bond stability.

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Study Notes

Topic 1.1: Structure of Water and Hydrogen Bonding

  • Water is a polar molecule due to unequal electron sharing between oxygen and hydrogen atoms. Oxygen has a higher electronegativity, pulling electrons closer to itself and creating a partial negative charge, while hydrogen atoms have a partial positive charge.
  • Hydrogen bonding is a weak interaction between polar molecules, involving the attraction between a partially positive hydrogen atom and a partially negative atom (e.g., oxygen) in another molecule.
  • Ionic bonding involves the transfer of electrons between atoms, forming ions that are attracted to each other.
  • Covalent bonding involves the sharing of electrons between atoms.
  • Hydrophobic compounds are non-polar (e.g., hydrocarbons), while hydrophilic compounds are polar or ionic (e.g., water-soluble compounds).
  • Water has unique properties due to hydrogen bonding: high specific heat, cohesion, adhesion, high heat of vaporization, more dense as a liquid at lower temperatures, evaporative cooling, and surface tension.

Topic 1.2: Elements of Life

  • Essential elements for life are Carbon (C), Hydrogen (H), Oxygen (O), Nitrogen (N), Phosphorus (P), and Sulfur (S) (CHONPS).
  • Organisms obtain these elements from various sources: Plants absorb from air, water, and soil; animals and fungi from food. Bacteria can vary in their absorption methods.
  • Macromolecules use these elements in different ways.
    • Carbohydrates contain Carbon, Hydrogen, and Oxygen (CHO).
    • Lipids contain Carbon, Hydrogen, and Oxygen (CHO), with some containing Phosphorus (e.g., phospholipids).
    • Proteins contain Carbon, Hydrogen, Oxygen, and Nitrogen (CHON), and sometimes Sulfur (CHONS).
    • Nucleic acids contain Carbon, Hydrogen, Oxygen, Nitrogen, and Phosphorus (CHONP).

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