Podcast
Questions and Answers
What is the primary purpose of performing pair comparisons in research?
What is the primary purpose of performing pair comparisons in research?
- To compare all treatment means at once.
- To identify specific treatments for planned comparisons. (correct)
- To replace the need for the F-test.
- To enhance the probability of Type I error.
Why is the probability of committing a Type I error increased in unplanned comparisons?
Why is the probability of committing a Type I error increased in unplanned comparisons?
- As every possible pair is compared without focus. (correct)
- Due to the absence of a specific hypothesis.
- Since only significant treatment effects are analyzed.
- Because paired comparisons are avoided.
When is the Least Significant Difference (LSD) method advisable to apply?
When is the Least Significant Difference (LSD) method advisable to apply?
- For any increase in the number of treatment pairs.
- When the null hypothesis is accepted.
- After confirming a significant treatment effect from the F-test. (correct)
- In all cases of treatment comparisons.
What condition must be met before performing F-protected LSD?
What condition must be met before performing F-protected LSD?
What risk is associated with calculating LSD when the null hypothesis is not rejected?
What risk is associated with calculating LSD when the null hypothesis is not rejected?
What indicates that two contrasts are orthogonal?
What indicates that two contrasts are orthogonal?
Why might mutual orthogonality not be essential in statistical tests?
Why might mutual orthogonality not be essential in statistical tests?
How many possible comparisons can be made with 5 levels of a factor?
How many possible comparisons can be made with 5 levels of a factor?
What type of analysis can be simpler than multiple regression for observing response curves?
What type of analysis can be simpler than multiple regression for observing response curves?
What is the implication of independent contrasts in statistical analysis?
What is the implication of independent contrasts in statistical analysis?
Which factor defines a trend comparison?
Which factor defines a trend comparison?
Which term refers to comparisons resulting from partitioning factors in ANOVA into single df comparisons?
Which term refers to comparisons resulting from partitioning factors in ANOVA into single df comparisons?
What term describes contrasts that are also called trend comparisons?
What term describes contrasts that are also called trend comparisons?
What type of relationships does 2nd order comparisons measure?
What type of relationships does 2nd order comparisons measure?
In the context of polynomial contrasts, how many degrees of freedom are attributed to the Linear source of variation?
In the context of polynomial contrasts, how many degrees of freedom are attributed to the Linear source of variation?
What does orthogonal polynomials associate with each power of the independent variable?
What does orthogonal polynomials associate with each power of the independent variable?
Which polynomial order corresponds to measuring cubic relationships?
Which polynomial order corresponds to measuring cubic relationships?
In a randomized complete block design (RCBD), what is the error degree of freedom?
In a randomized complete block design (RCBD), what is the error degree of freedom?
For polynomial contrasts, how is the total degree of freedom calculated in the RCBD setup?
For polynomial contrasts, how is the total degree of freedom calculated in the RCBD setup?
What does it indicate if the sum of the product of the corresponding coefficients of two comparisons is zero?
What does it indicate if the sum of the product of the corresponding coefficients of two comparisons is zero?
What does the sum of squares help to compute in the context of comparisons?
What does the sum of squares help to compute in the context of comparisons?
Which type of comparison is associated with measuring linear relationships?
Which type of comparison is associated with measuring linear relationships?
Which treatments are compared when examining the effects of Hg fungicides versus non-Hg fungicides?
Which treatments are compared when examining the effects of Hg fungicides versus non-Hg fungicides?
What is the null hypothesis (Ho) when comparing Hg and non-Hg fungicides?
What is the null hypothesis (Ho) when comparing Hg and non-Hg fungicides?
What should be concluded if Q is very small or near zero?
What should be concluded if Q is very small or near zero?
In the context of the examples provided, what do E, F, G, and H represent?
In the context of the examples provided, what do E, F, G, and H represent?
What effect is generally observed on soybean yield with wider row spacing?
What effect is generally observed on soybean yield with wider row spacing?
What is the primary reason for performing ANOVA in agricultural research?
What is the primary reason for performing ANOVA in agricultural research?
Which spacing would likely yield the highest soybean production based on row spacing effects?
Which spacing would likely yield the highest soybean production based on row spacing effects?
What is a common methodology for analyzing the impact of row spacing on soybean yield?
What is a common methodology for analyzing the impact of row spacing on soybean yield?
In terms of row spacing, which of the following adjustments generally leads to reduced yield?
In terms of row spacing, which of the following adjustments generally leads to reduced yield?
How does shorter row spacing impact competition among soybean plants?
How does shorter row spacing impact competition among soybean plants?
What should researchers expect when testing yield variations among different row spacings?
What should researchers expect when testing yield variations among different row spacings?
Why is row spacing an important factor to consider in soybean yield studies?
Why is row spacing an important factor to consider in soybean yield studies?
What is the significance of the linear component in the analysis of variance?
What is the significance of the linear component in the analysis of variance?
Which step follows the calculation of the sum of squares for each contrast?
Which step follows the calculation of the sum of squares for each contrast?
What are polynomial contrasts used for in statistical analysis?
What are polynomial contrasts used for in statistical analysis?
Why is it important to compare linear and quadratic effects?
Why is it important to compare linear and quadratic effects?
Which of the following describes the role of step 3 in the partition treatment process?
Which of the following describes the role of step 3 in the partition treatment process?
What do significant linear and quadratic effects indicate in row spacing treatments?
What do significant linear and quadratic effects indicate in row spacing treatments?
What is the outcome of correctly partitioning treatment effects?
What is the outcome of correctly partitioning treatment effects?
In the context of the analysis, what does SS stand for?
In the context of the analysis, what does SS stand for?
Flashcards
Pair Comparisons
Pair Comparisons
Comparing specific treatments to each other in a pre-planned manner.
Unplanned Comparisons
Unplanned Comparisons
Comparing all possible pairs of treatment means.
Type I Error
Type I Error
Declaring a significant difference when one doesn't exist.
LSD (Least Significant Difference)
LSD (Least Significant Difference)
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F-protected LSD
F-protected LSD
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Contrast Test Formula
Contrast Test Formula
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Orthogonal Contrast
Orthogonal Contrast
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Hg vs Non-Hg Fungicides
Hg vs Non-Hg Fungicides
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Q-Value
Q-Value
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Rejecting the Null Hypothesis
Rejecting the Null Hypothesis
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Contrast df
Contrast df
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Trend Comparisons
Trend Comparisons
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Orthogonality
Orthogonality
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Redundancy
Redundancy
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What is the relationship between the number of treatment levels and the number of possible orthogonal contrasts?
What is the relationship between the number of treatment levels and the number of possible orthogonal contrasts?
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Why are orthogonal contrasts desirable?
Why are orthogonal contrasts desirable?
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What is the benefit of trend comparisons?
What is the benefit of trend comparisons?
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Orthogonal Polynomials
Orthogonal Polynomials
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Linear Relationship
Linear Relationship
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Quadratic Relationship
Quadratic Relationship
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Cubic Relationship
Cubic Relationship
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ANOVA for Polynomial Contrasts
ANOVA for Polynomial Contrasts
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Linear Contrast
Linear Contrast
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Quadratic Contrast
Quadratic Contrast
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Cubic Contrast
Cubic Contrast
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Row Spacing Effect
Row Spacing Effect
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Polynomial Contrast
Polynomial Contrast
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ANOVA (Analysis of Variance)
ANOVA (Analysis of Variance)
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RCBD (Randomized Complete Block Design)
RCBD (Randomized Complete Block Design)
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Step 1: ANOVA of data
Step 1: ANOVA of data
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Step 2: Interpreting Results
Step 2: Interpreting Results
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Wider vs. Narrower Row Spacing
Wider vs. Narrower Row Spacing
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Expected Yield
Expected Yield
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Sum of Squares (SS) for Contrast
Sum of Squares (SS) for Contrast
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ANOVA with Polynomial Contrasts
ANOVA with Polynomial Contrasts
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Linear vs. Quadratic Effects
Linear vs. Quadratic Effects
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Study Notes
Lecture 6: Comparison Between Treatment Means
- Pair comparisons are used to compare specific treatments. These comparisons are pre-planned.
- Unplanned comparisons consider every possible pair of treatment means, increasing the probability of a Type I error (falsely declaring a significant difference when there isn't one).
- Type I error increases with more comparisons in an experiment.
Least Significant Difference (LSD)
- Suitable for planned comparisons.
- Experiment-wise error rate increases as more pairs of treatments are compared.
- Should only be used when the treatment effect is significant from the F-test.
F-protected LSD
- Performed when the null hypothesis (H₀) is rejected.
- Can be calculated even if H₀ isn't rejected, leading to a misleading suggestion of significant differences if there aren't any.
- Therefore, LSD should only be calculated when H₀ is rejected.
LSD Formula
- Formula provided
- Conditions and implications of the formula, including when differences are significant depending on the calculation results.
Group Comparisons
- Comparisons can be conducted by a single degree of freedom linear contrast.
- Contrasts compare the mean of one group to the mean of another group, and they must be planned in advance.
- Linear contrasts involve partitioning the degrees of freedom and sums of squares (SS) of the treatments.
- Orthogonal comparisons are independent comparisons.
Advantages of Group Comparisons
- Answer specific questions about treatment effects.
- Simple calculations.
- Useful for checking treatment SS.
Orthogonal Coefficients
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Used in comparisons of groups of varying sizes.
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Coefficients are assigned to each group member, typically +1 for one group and -1 for another to ensure the sum of the coefficients equals zero for any two contrasts.
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Coefficients are often simplified to smallest possible integers.
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Interaction coefficients are calculated by multiplying the coefficients of the main effects.
Formulas for Orthogonal Comparisons
- The sum of the coefficients (c₁) in a set of orthogonal comparisons will always equal 0.
- ∑cᵢ = 0*
- The sum of the products of coefficients for any two different orthogonal comparisons will also always equal zero.
- ∑cᵢcⱼ = 0*
- Formula provided for calculating the contrast (Q).
Trend Comparisons
- Used for equally spaced treatments.
- Provides a look at the response curve of the data, and can be calculated using multiple regression.
- However, this can be simpler using other calculations.
ANOVA
- Method for partitioning variation in an ANOVA table, creating distinct comparisons.
- The number of levels for a factor represents the possible comparisons.
- Formula provided for calculating the sum of squares for linear and quadratic contrasts.
- F-tests allow calculation for each polynomial contrast using an appropriate formula.
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