Podcast
Questions and Answers
Match the following terms with their definitions:
Match the following terms with their definitions:
Hypothetico-Deductive Approach = Series of steps leading to a robust conclusion about a problem Falsificationist Procedure = Method of increasing the power of conclusions by introducing null hypothesis Descriptive Statistic = Describes the pattern of measurements Parametric Data = Assumes normal distribution and uses mean and standard deviation
Match the following hypothesis types with their characteristics:
Match the following hypothesis types with their characteristics:
Null Hypothesis (H0) = Predicts no effect or no difference Research Hypothesis (H1) = Proposes an effect or a difference Good Hypothesis = Testable and specific Inductive Generalization = Making generalizations based on one or more observations
Match the measures of central tendency with their descriptions:
Match the measures of central tendency with their descriptions:
Mean = Average used for bell-shaped distributions Median = Middle value used for non-symmetrical data Mode = Value that appears most frequently in a dataset Range = Difference between highest and lowest values in a dataset
Match the statistical terms with their examples:
Match the statistical terms with their examples:
Match the types of data with their properties:
Match the types of data with their properties:
Match the following terms to their limitations:
Match the following terms to their limitations:
Match the following statistical measures with their usage:
Match the following statistical measures with their usage:
Match the following concepts with their descriptions:
Match the following concepts with their descriptions:
Match the pipettor with its volume range:
Match the pipettor with its volume range:
Match the term with its description in the context of the lac operon:
Match the term with its description in the context of the lac operon:
Match the following substances with their roles in the β-galactosidase assay:
Match the following substances with their roles in the β-galactosidase assay:
Match the safety classification with its description:
Match the safety classification with its description:
Match the following components of pipetting techniques with their features:
Match the following components of pipetting techniques with their features:
Match the following statements about E. coli K-12:
Match the following statements about E. coli K-12:
Match the elements involved in the transcription process of the lac operon:
Match the elements involved in the transcription process of the lac operon:
Match the following components related to the chromogenic substrate:
Match the following components related to the chromogenic substrate:
Match the following measures of central tendency with their definitions:
Match the following measures of central tendency with their definitions:
Match the following measures of variability with their descriptions:
Match the following measures of variability with their descriptions:
Match the terms related to outliers with their definitions:
Match the terms related to outliers with their definitions:
Match the inferential statistics concepts with their definitions:
Match the inferential statistics concepts with their definitions:
Match the components of the Memory Interference Test (MIT) with their features:
Match the components of the Memory Interference Test (MIT) with their features:
Match the epidemiology terms with their definitions:
Match the epidemiology terms with their definitions:
Match the concepts related to disease spread with their descriptions:
Match the concepts related to disease spread with their descriptions:
Match the following terms with their corresponding definitions in the context of statistics:
Match the following terms with their corresponding definitions in the context of statistics:
Match the respiration-related terms with their definitions:
Match the respiration-related terms with their definitions:
Match the concepts related to mitochondrial DNA (mtDNA) with their descriptions:
Match the concepts related to mitochondrial DNA (mtDNA) with their descriptions:
Match the migrations of haplogroups to their respective origins:
Match the migrations of haplogroups to their respective origins:
Match the effects of elevated CO₂ levels with their results:
Match the effects of elevated CO₂ levels with their results:
Match the timeline of human migration with its corresponding haplogroups:
Match the timeline of human migration with its corresponding haplogroups:
Match the prefixes with the terms related to heart rates:
Match the prefixes with the terms related to heart rates:
Match the terms related to genetic studies with their clarifications:
Match the terms related to genetic studies with their clarifications:
Match the migration patterns of haplogroups to their timelines:
Match the migration patterns of haplogroups to their timelines:
Match the haplogroups with their primary characteristics:
Match the haplogroups with their primary characteristics:
Match the mutations with their respective haplogroups:
Match the mutations with their respective haplogroups:
Match the following primer characteristics with their descriptions:
Match the following primer characteristics with their descriptions:
Match the following applications with their corresponding gel electrophoresis types:
Match the following applications with their corresponding gel electrophoresis types:
Match the PCR steps with their descriptions:
Match the PCR steps with their descriptions:
Match the following SNP characteristics with their definitions:
Match the following SNP characteristics with their definitions:
Match the primary origins of the haplogroups with their regions:
Match the primary origins of the haplogroups with their regions:
Match the following limitations with the appropriate electrophoresis technique:
Match the following limitations with the appropriate electrophoresis technique:
Match the haplogroup with its specific traits:
Match the haplogroup with its specific traits:
Match the following terms related to PCR with their roles:
Match the following terms related to PCR with their roles:
Match the types of strands in DNA with their descriptions:
Match the types of strands in DNA with their descriptions:
Match the segments of mtDNA with their focus:
Match the segments of mtDNA with their focus:
Match the following roles of components in SDS-PAGE:
Match the following roles of components in SDS-PAGE:
Match the haplogroup origins with their respective descriptions:
Match the haplogroup origins with their respective descriptions:
Match the following descriptions with their respective components of PCR:
Match the following descriptions with their respective components of PCR:
Match the following DNA properties with their implications:
Match the following DNA properties with their implications:
Flashcards
Hypothetico-Deductive Approach
Hypothetico-Deductive Approach
A series of steps leading to conclusions about a problem. Starts with observation, creates hypotheses, and tests them through experiments.
Falsificationist Procedure
Falsificationist Procedure
A method to strengthen conclusions from the hypothetico-deductive approach. Uses a null hypothesis (no effect) to make it easier to disprove a hypothesis.
Good Hypothesis Characteristics
Good Hypothesis Characteristics
Specific (clear groups/measures) and testable (statistically rejectable/retained).
Inductive Generalizations
Inductive Generalizations
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Population
Population
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Sample
Sample
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Descriptive Statistics
Descriptive Statistics
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Measures of Central Tendency (Median)
Measures of Central Tendency (Median)
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Standard Deviation
Standard Deviation
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Median Absolute Deviation (MAD)
Median Absolute Deviation (MAD)
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Interquartile Range (IQR)
Interquartile Range (IQR)
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Outlier
Outlier
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Inferential Statistics
Inferential Statistics
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P-value
P-value
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Epidemiolog
Epidemiolog
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Pandemic
Pandemic
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Pipette P20 range
Pipette P20 range
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Pipette P200 range
Pipette P200 range
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Pipette P1000 range
Pipette P1000 range
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β-galactosidase function
β-galactosidase function
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Lac Operon Regulation (no lactose)
Lac Operon Regulation (no lactose)
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Lac Operon Regulation (with lactose)
Lac Operon Regulation (with lactose)
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E. coli K-12 risk group
E. coli K-12 risk group
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Lac Operon I gene function
Lac Operon I gene function
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Respiration Belt
Respiration Belt
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Carbon Dioxide's Effect on Respiration
Carbon Dioxide's Effect on Respiration
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Tachycardia
Tachycardia
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Bradycardia
Bradycardia
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Mitochondrial DNA (mtDNA)
Mitochondrial DNA (mtDNA)
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Haplogroups
Haplogroups
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Reconstructed Sapiens Reference Sequence (RSRS)
Reconstructed Sapiens Reference Sequence (RSRS)
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Global Migration Patterns of Haplogroups
Global Migration Patterns of Haplogroups
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Mutation
Mutation
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Phylogenetic Tree
Phylogenetic Tree
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Hypervariable Segment I (HVSI)
Hypervariable Segment I (HVSI)
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Primer
Primer
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PCR (Polymerase Chain Reaction)
PCR (Polymerase Chain Reaction)
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Forward Primer
Forward Primer
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PCR Product Size
PCR Product Size
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Primer Length
Primer Length
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Primer Melting Temperature
Primer Melting Temperature
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SNP (Single Nucleotide Polymorphism)
SNP (Single Nucleotide Polymorphism)
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SDS-PAGE
SDS-PAGE
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Agarose Gel Electrophoresis
Agarose Gel Electrophoresis
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Reducing Agent
Reducing Agent
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Study Notes
Lab A - Scientific Method and the Memory Interference Test (MIT)
- Hypothetico-Deductive Approach:
- A series of steps leading to robust conclusions about a specific problem
- Proposed by Karl Popper
- Starts with observations and forms hypotheses (H₁)
- Tests hypotheses through experiments
- Uses statistical analysis to validate hypotheses
- Falsificationist Procedure:
- Increases the power of conclusions from the hypothetico-deductive approach
- Introduces null hypothesis (H₀), predicting no significant effect
- Easier to disprove a hypothesis than prove it
- Good Hypothesis Characteristics:
- Specific: Clearly defines groups and measures
- Testable: Can be statistically rejected or accepted after testing
- Inductive Generalizations:
- Making generalizations based on one or more observations (e.g. observing only white swans and concluding all swans are white)
- Limitations: Prone to revisions; a single contradictory observation can disprove the generalization
- Tied to falsificationist procedure; difficult to prove hypotheses, easy to disprove one with a counterexample
- Statistics:
- Population: Entire group of interest (e.g., all humans in South America)
- Sample: Subset of measurements from the population
- Descriptive Statistics
Measures of Central Tendency
- Mean: Average, used for bell-shaped distributions
- Median: Middle value, resistant to extreme values (outliers) or skewed data, more reliable than mean
- Mode: Most frequent value
Measures of Variability
- Standard Deviation (SD): Measures spread, for bell-shaped data
- Median Absolute Deviation (MAD): Measures spread, for all data types
- Parameter: Represents the central tendency
- Interquartile Range (IQR): Calculation: Q₃ - Q₁
- Outliers: Potential/confirmed outliers are identified using IQR with inner and outer fences.
Inferential Statistics
- Definition: Assesses whether two or more samples come from the same population
- Comparison: Compares sample groups to determine significance of differences
- Resampling (Bootstrapping): Method instead of t-tests
- P-value: Probability of observing results if the null hypothesis is true
- p < 0.01: Statistically significant; reject the null hypothesis (H₀)
- p ≥ 0.01: Not significant; fail to reject the null hypothesis (H₀)
- Memory Interference Test (MIT): Computer program testing memory using visual or auditory cues
Lab B - Epidemiology & Lab Techniques
- Epidemiology: Study of diseases and populations at risk
Assay
- Definition: Analyzing samples to determine specific characteristics. Must include controls and thorough consideration of results
- Types: DNA assays (e.g., CCR5-△32 mutation testing for HIV resistance), protein assays (e.g., measuring antibody levels)
- Applications: Detecting immune response, measuring protein levels
Protein Gel Electrophoresis
- Definition: Separates proteins based on size (SDS-PAGE); using polyacrylamide gels mostly run vertically
Spectrophotometry
- Definition: Used to accurately determine the concentration of DNA, RNA, or protein in a sample
- Procedure: Measures light absorption at specific wavelengths
- Difference in signal with/without compound of interest is used for calculation
HIV: A Current Global Pandemic
- Mechanism: HIV infects T-cells using CCR5 protein, resulting in immune deficiency
- Natural Immunity: CCR5-△32 mutation prevents HIV entry
- Assay Applications: Diagnose HIV, measure viral load, evaluate treatment effectiveness
Pipetting Techniques
- Basics: Specific volume ranges for P20, P200, and P1000 pipettors. Red numbers indicate the pipette in use.
- Procedure: Avoid cross-contaminationことで changing pipette tips on each pipetting use.
Lab C - Beta-galactosidase Assay
- Beta-galactosidase: Enzyme hydrolyzing lactose into glucose and galactose in E. coli, conserving energy when lactose is present
- Lac Operon Regulation: Controlled by lac repressor; lactose presence causes repressor detachment; enabling RNA polymerase action
Chromogenic Substrate
- ONPG: Substitute for lactose, hydrolyzed by the enzyme, producing a yellow o-nitrophenol
- Measurement: Amount of o-nitrophenol produced measured using a spectrophotometer by quantifying its absorption
Miller Units Formula
- Calculation: Method to measure o-nitrophenol production in a given time period to calculate units and cell density. Units are derived from the OD (optical density) of the O-nitrophenol production. OD 600 is used for estimating the cell density within a culture.
Lab D - Human Physiology
- Introduction:
- Respiratory System: Breathing patterns
- Cardiovascular System: Heart activity
- Musculoskeletal System: Grip and muscle strength
- Nervous System: Responses to stimuli
Stations of Physiological Measurements
Lab E - DNA Isolation and Primer Design
- Introduction to mtDNA:
- Mitochondrial DNA (small, circular DNA molecule in mitochondria)
- Haploid: Inherited only from egg parent, used for tracing maternal lineage
Lab F - Agarose and Polyacrylamide Gel Electrophoresis
- SDS-PAGE: Separates proteins by size in denatured state; using SDS (denatures protein), reducing agent to break disulfide bonds
- Agarose Gel: Useful for separating larger molecules like DNA
Lab G - Metabolic Pathways of Algae
- Greenhouse Gases: Solar absorption, leading to Earth?s habitable temperature. Rising CO₂ levels from fossil fuels have environmental effects (including ocean warming, decreased oxygen, and weather.)
- The Carbon Cycle: CO₂ involved in atmosphere/terrestrial/aquatic biomes
- Photosynthesis: Plants, algae, phytoplankton convert CO₂) into glucose and oxygen, Increasing pH (basic environment);
- Cellular Respiration: Mitochondria break down glucose, forming CO₂, water, and ATP; Decreasing pH (acidic environment)
Lab H - Microscopy and Histology
- Histology: Microstructural study of tissues, relating morphology to its specialized function (e.g. gas exchange, energy storage, signal transmission) using tissue slides
- Tissue Identification (e.g.) Aorta, Skin
Lab I - Sequence Analysis and Egg-Parental Lineages
- mtDNA Characteristics: Circular DNA inherited only from the mother, shows a high mutation rate
- DNA Sequencing Overview:
- Sanger sequencing (dideoxy method): Terminating DNA synthesis with dideoxy nucleotides; DNA sequencing using a particular fluorescent dye to reveal the particular nucleotide in a sequence
- Analyze Sequence Quality: Good sequence quality: clear distinct peaks; high similarities to reference sequences. Poor sequence: Low signal intensity, overlapping peaks, low % similarity, too many ambiguous base calls
Identify Mutations (using sequence chromatograms):
- Recognize mutations by comparing sequence patterns (especially those of non-black, highlighted bases).
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