Recombinant DNA Technology

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Questions and Answers

What is the primary goal of recombinant DNA technology?

  • To prevent bacteria from accepting foreign DNA.
  • To study the natural DNA replication processes in bacteria.
  • To synthesize hormones and enzymes using traditional industrial methods.
  • To combine genetic material from different organisms. (correct)

Which of the following natural processes in bacteria inspired recombinant DNA technology?

  • The ability to perform photosynthesis.
  • The use of plasmids, transposons, and proviruses. (correct)
  • The process of binary fission.
  • The formation of endospores under stress.

What is the role of a vector in the recombinant DNA procedure?

  • To replicate the gene and produce the desired protein.
  • To provide drug resistance to the cloning host.
  • To insert the DNA into a cloning host. (correct)
  • To excise the desired gene from the source organism.

Why are plasmids considered excellent vectors?

<p>They are small, well-characterized, and readily accepted by cloning hosts. (D)</p> Signup and view all the answers

What is the purpose of including a gene for drug resistance in a cloning vector?

<p>To prevent the growth of cells that do not harbor the plasmid. (C)</p> Signup and view all the answers

What is the primary advantage of using Saccharomyces cerevisiae as a cloning host compared to E. coli?

<p>It can splice mRNA and modify proteins like a eukaryotic cell. (C)</p> Signup and view all the answers

Which of the following is an indispensable quality of all recombinant vectors?

<p>The ability to carry a significant piece of donor DNA. (D)</p> Signup and view all the answers

What could be a potential disadvantage of using E. coli as a cloning host?

<p>It is unable to process and modify eukaryotic genes and products. (B)</p> Signup and view all the answers

Which of the following is NOT a typical attribute of cloning vectors?

<p>The ability to perform photosynthesis. (B)</p> Signup and view all the answers

What is achieved through genetic cloning in recombinant DNA technology?

<p>Propagation of a selected gene in a different host organism. (D)</p> Signup and view all the answers

Which enzyme is used to excise a desired gene during cloning?

<p>Restriction endonuclease. (C)</p> Signup and view all the answers

Compared to early plasmids, what is a significant advantage of using BACs (Bacterial Artificial Chromosomes) or YACs (Yeast Artificial Chromosomes) as vectors?

<p>They can hold much larger DNA inserts. (D)</p> Signup and view all the answers

What is the primary function of the cloning host in recombinant DNA technology?

<p>To replicate the gene and produce the encoded protein. (D)</p> Signup and view all the answers

How does the use of drug-containing media contribute to the selection of successful cloning hosts?

<p>It allows only cells harboring the plasmid to survive and grow. (B)</p> Signup and view all the answers

What is the significance of an 'origin of replication' on a cloning vector?

<p>It enables the vector to be replicated by the host's DNA polymerase. (C)</p> Signup and view all the answers

Which type of vector is best suited for cloning very large DNA fragments (e.g., 300 kb or more)?

<p>Bacterial Artificial Chromosomes (BACs) or Yeast Artificial Chromosomes (YACs). (D)</p> Signup and view all the answers

If a eukaryotic gene, including its introns, needs to be correctly processed (spliced) after being introduced into a cloning host, which host would be most appropriate?

<p><em>Saccharomyces cerevisiae</em>. (B)</p> Signup and view all the answers

What is the role of bacteriophages in the context of cloning vectors?

<p>To inject DNA into bacterial hosts through transduction. (B)</p> Signup and view all the answers

Which step typically comes first in a recombinant DNA procedure?

<p>Selecting and excising the desired gene. (A)</p> Signup and view all the answers

What is the function of DNA polymerase in the context of cloning hosts and vectors?

<p>To replicate the vector within the host cell. (D)</p> Signup and view all the answers

In advanced recombinant DNA methodologies, what critical biophysical parameter dictates the selection of either electroporation or microinjection as the preferential method for introducing vectors into a cloning host?

<p>The hydrodynamic radius of the vector-insert complex, relative to the average pore size of the host cell's nuclear membrane. (B)</p> Signup and view all the answers

Considering the degeneracy of the genetic code, what biostatistical method would be most appropriate to optimize codon usage in a recombinant gene to maximize translational efficiency in a heterologous expression system, such as E. coli?

<p>Employing a Monte Carlo simulation to sample the codon usage space, guided by experimentally determined tRNA adaptation index (tAI) values. (B)</p> Signup and view all the answers

When introducing a novel metabolic pathway into a cloning host using recombinant DNA technology, what systems biology approach would be most effective to predict and mitigate potential metabolic bottlenecks or imbalances?

<p>Flux balance analysis (FBA) constrained by thermodynamic principles and enzyme kinetics to simulate metabolic fluxes and identify rate-limiting steps. (B)</p> Signup and view all the answers

In the context of constructing a genome-scale metabolic model for a recombinant cloning host, what advanced computational technique would be best suited for integrating multi-omics data (transcriptomics, proteomics, metabolomics) to refine model predictions and identify key regulatory mechanisms?

<p>Bayesian network inference to construct probabilistic graphical models representing regulatory relationships between genes, proteins, and metabolites. (A)</p> Signup and view all the answers

Considering the complexities of protein folding and post-translational modification, what advanced biophysical technique would be most instrumental in assessing the structural integrity and conformational stability of a recombinant protein expressed in a heterologous cloning host?

<p>Cryo-electron microscopy (cryo-EM) to determine the high-resolution three-dimensional structure of the protein in its native state. (A)</p> Signup and view all the answers

When engineering a cloning host for the production of a complex secondary metabolite, what synthetic biology strategy would be most effective in preventing the accumulation of toxic intermediates that could inhibit cell growth or product formation?

<p>Dynamic pathway regulation using biosensors and feedback control loops to adjust enzyme expression levels in response to intermediate concentrations. (D)</p> Signup and view all the answers

In the context of developing a CRISPR-Cas9 based genome editing system for a non-model cloning host, what computational approach would be most suitable for designing highly specific guide RNAs (gRNAs) that minimize off-target effects?

<p>Whole-genome sequencing followed by bioinformatics analysis using algorithms that predict gRNA on-target activity and off-target potential based on sequence similarity and chromatin accessibility. (D)</p> Signup and view all the answers

When engineering a cloning host to produce a therapeutic protein that requires specific glycosylation patterns for optimal efficacy, what glycoengineering strategy would be most effective in achieving the desired glycosylation profile?

<p>All of the above. (D)</p> Signup and view all the answers

Considering the challenges of expressing eukaryotic membrane proteins in E. coli, what biophysical strategy would be most effective in improving protein folding and stability, and preventing aggregation?

<p>All of the above. (D)</p> Signup and view all the answers

When designing a recombinant DNA construct for gene therapy applications, what strategy would be most effective in achieving sustained, tissue-specific expression of the therapeutic gene while minimizing the risk of insertional mutagenesis?

<p>Using a self-inactivating (SIN) lentiviral vector pseudotyped with a tissue-specific targeting ligand, combined with a strong internal promoter and a chromatin insulator element. (B)</p> Signup and view all the answers

In the context of engineering a microbial cloning host for enhanced tolerance to a toxic industrial compound, what adaptive laboratory evolution (ALE) strategy would be most effective in selecting for resistant mutants?

<p>Continuous culture in a chemostat with gradually increasing concentrations of the toxic compound, combined with whole-genome sequencing to identify causative mutations. (A)</p> Signup and view all the answers

When constructing a synthetic microbial consortium for the degradation of a complex pollutant, what quorum sensing (QS) interference strategy would be most effective in preventing the formation of biofilms that could hinder pollutant access and degradation?

<p>Enzymatic degradation of QS signaling molecules, combined with the use of QS-resistant strains and the introduction of QS-disrupting peptides. (A)</p> Signup and view all the answers

Considering the challenges of expressing complex multimeric proteins in a bacterial cloning host, what strategy would be most effective in ensuring proper subunit assembly and stoichiometry?

<p>Co-expression of all subunits from a single operon with optimized ribosome binding sites (RBSs) and codon usage, combined with the use of a chaperone-assisted folding system. (A)</p> Signup and view all the answers

In the context of engineering a cloning host for the production of a biofuel from lignocellulosic biomass, what consolidated bioprocessing (CBP) strategy would be most effective in achieving high yields and titers?

<p>Expression of heterologous cellulases, hemicellulases, and lignin-degrading enzymes, combined with metabolic engineering to enhance sugar utilization and ethanol tolerance. (A)</p> Signup and view all the answers

When engineering a cloning host for the production of a recombinant antibody, what antibody humanization strategy would be most effective in minimizing immunogenicity while preserving antigen-binding affinity?

<p>All of the above. (D)</p> Signup and view all the answers

Considering the challenges of expressing a complex metabolic pathway in a heterologous cloning host, what dynamic regulation strategy would be most effective in optimizing pathway flux and preventing the accumulation of toxic intermediates?

<p>All of the above. (D)</p> Signup and view all the answers

In the context of engineering a cloning host for the production of a bioplastic, what metabolic engineering strategy would be most effective in increasing the flux towards the desired polymer precursor while minimizing the formation of undesired byproducts?

<p>All of the above. (D)</p> Signup and view all the answers

Considering the challenges of expressing a eukaryotic protein with multiple disulfide bonds in a bacterial cloning host, what redox engineering strategy would be most effective in promoting proper folding and preventing aggregation?

<p>Co-expression of periplasmic chaperones and disulfide bond isomerases, combined with the use of oxidizing culture conditions and redox-buffering agents. (A)</p> Signup and view all the answers

In the context of engineering a cloning host for the production of a pharmaceutical compound with chiral centers, what biocatalysis strategy would be most effective in achieving high enantiomeric excess?

<p>All of the above. (D)</p> Signup and view all the answers

Flashcards

Recombinant DNA Technology

Deliberately removing genetic material from one organism and combining it with that of another.

Genetic Cloning

The process of producing identical copies of a gene or DNA sequence within a host organism.

Restriction Endonucleases

Enzymes that cut DNA at specific recognition nucleotide sequences.

Cloning Vector

A carrier molecule (e.g., plasmid or virus) used to transfer foreign DNA into a host cell.

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Cloning Host

A cell (e.g., bacterium or yeast) that receives foreign DNA from a vector and replicates it.

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Good Recombinant Vector

Must be capable of carrying a significant piece of donor DNA and readily accepted by the cloning host.

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Plasmids as Vectors

Small, well-characterized, easy to manipulate to insert genes into cloning hosts through transformation.

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Bacteriophages as Vectors

Inject DNA into bacterial hosts through transduction as vectors.

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Origin of Replication (Vector)

A sequence on the vector required for replication by the host's DNA polymerase.

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Cosmids

Vectors that can hold up to 45 kb of DNA insert size.

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BACs and YACs

Vectors that can hold as much as 300 kb and 1000 kb of DNA respectively.

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Drug Resistance Gene (Vector)

A gene on the vector that allows for selection by growing cells in drug-containing media.

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E. coli vs. Yeast (Cloning Hosts)

E. coli is easy to use and widely studied, but cannot modify eukaryotic proteins - alternative is yeast.

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Escherichia coli (E. coli)

The traditional cloning host with well-established protocols but limited in post-translational modifications.

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Saccharomyces cerevisiae

Important for industrial processes and research.

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DNA Cloning

The technique used to create multiple copies of a specific DNA fragment.

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Plasmids

Extrachromosomal DNA molecules in bacteria, often used as vectors.

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Transformation (DNA)

The process where bacteria take up foreign DNA from their surroundings.

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Transduction (DNA)

The process where a virus transfers genetic material into a bacterial cell.

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Study Notes

  • Recombinant DNA technology aims to combine genetic material from different organisms.
  • This technology originated in 1970, inspired by bacteria's natural DNA manipulation using plasmids, transposons, and proviruses.
  • Bacteria's ability to accept, replicate, and express foreign DNA makes them useful for studying genes in isolation.
  • Biotechnologists realized that bacteria could be engineered to mass-produce substances like hormones, enzymes, and vaccines.
  • The recombinant DNA procedure forms genetic clones.
  • Cloning involves removing a selected gene from an organism and propagating it in a different host.
  • The process includes gene selection, excision by restriction endonuclease, and isolation.
  • The gene is inserted into a vector (plasmid or virus) that will insert the DNA into a cloning host.
  • The cloning host (bacterium or yeast) replicates, transcribes, and translates the gene into its protein product.

Cloning Vectors

  • A good recombinant vector must be able to carry a sizable piece of donor DNA and be readily accepted by the cloning host.
  • Plasmids are excellent vectors due to their small size, well-characterized nature, and easy transformation.
  • Bacteriophages are also useful as they can inject DNA into bacterial hosts through transduction.
  • Vectors need an origin of replication for replication by the cloning host's DNA polymerase.
  • The vector must accept DNA of the desired size as early plasmids could only accept less than 10 kb of DNA.
  • Cosmids can hold 45 kb, while bacterial artificial chromosomes (BACs) and yeast artificial chromosomes (YACs) can hold up to 300 kb and 1000 kb, respectively.
  • Vectors usually contain a gene that gives drug resistance to the cloning host.
  • This allows for selection of cells harboring the plasmid in drug-containing media.
  • Thousands of cloning vectors are commercially available, each suited for specific projects.

Cloning Hosts

  • The best cloning hosts have key characteristics such as Escherichia coli, which is the traditional cloning host.
  • Escherichia coli protocols are well established, relatively easy, and reliable.
  • Hundreds of specialized cloning vectors have been developed for Escherichia coli.
  • Escherichia coli cannot perform mRNA splicing or protein modification like the eukaryotic endoplasmic reticulum and Golgi apparatus.
  • Saccharomyces cerevisiae, a eukaryotic yeast, can process and modify eukaryotic genes and products and is an alternative host for certain industrial processes and research.

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