Proteins and Amino Acids Composition

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Questions and Answers

What is the purpose of the reaction between cyanocobalamin (CN adduct) and ATP?

  • To cleave the Co-C bond and form radical species
  • To form the adenylated B-12 coenzyme (correct)
  • To transfer a CH3 ion to Hg, Pb, and Sn salts
  • To catalyze the cleavage of the sugar-phosphate backbone of DNA

What is the function of the radical species formed from the homolytic cleavage of the Co-C bond?

  • To facilitate the specific uptake of iron by microorganisms
  • To catalyze the cleavage of the sugar-phosphate backbone of DNA
  • To transfer a CH3 ion to Hg, Pb, and Sn salts
  • To participate in several enzymatically catalyzed H-transfer reactions (correct)

What is the primary function of siderophores secreted by microorganisms?

  • To bind Fe3+ ion with high affinity and produce soluble complexes that can be taken up by the organism (correct)
  • To transfer a CH3 ion to Hg, Pb, and Sn salts in aqueous solution
  • To participate in several enzymatically catalyzed H-transfer reactions
  • To catalyze the cleavage of the sugar-phosphate backbone of DNA

What is the primary mechanism by which bleomycin acts as an antitumor antibiotic?

<p>By binding to DNA and, using oxygen redox chemistry, catalyzing the cleavage of the sugar-phosphate backbone (B)</p> Signup and view all the answers

Which of the following is an example of a siderophore mentioned in the text?

<p>Enterobactin (A)</p> Signup and view all the answers

Which of the following is an example of a complex assembly mentioned in the text?

<p>Photosynthetic reaction center (B)</p> Signup and view all the answers

What is the main factor determining the orientation of ligand donor atoms in a metalloprotein?

<p>Tertiary structure (C)</p> Signup and view all the answers

Which type of interactions is NOT involved in the forces affecting the folding of a polypeptide into a unique 3D structure?

<p>Glycosidic bonds (D)</p> Signup and view all the answers

What type of structure describes the local conformation over groups of a few adjacent amino acids?

<p>Secondary structure (C)</p> Signup and view all the answers

What is the role of splicing in eukaryotic gene expression?

<p>Production of mature messenger RNA (B)</p> Signup and view all the answers

In a metalloprotein, what happens to the tertiary structure in the absence of bound metal?

<p>It remains stable (C)</p> Signup and view all the answers

Which protein is an example of a dimer made up of two identical subunits?

<p>Cu-Zn superoxide dismutase (B)</p> Signup and view all the answers

What contributes to the stability of the metal-binding site in metalloproteins?

<p>Preorganization by tertiary structure (B)</p> Signup and view all the answers

What promotes a transition from a partially folded form to a more completely folded form in some metal-binding proteins?

<p>{Ca2+} binding (C)</p> Signup and view all the answers

What does the removal of the Zn2+-binding site cause in zinc finger domains?

<p>Alters the site of turns (A)</p> Signup and view all the answers

How do subunits interact with each other in proteins to form larger assemblies?

<p>By interacting with one another (C)</p> Signup and view all the answers

Which of the following is not one of the 20 essential amino acids that make up proteins?

<p>Helium (C)</p> Signup and view all the answers

What is the typical configuration of the $\alpha$-carbon in amino acids found in proteins?

<p>S (C)</p> Signup and view all the answers

Which of the following amino acid side chains is NOT a common metal ion binding ligand in proteins?

<p>Methyl group of Alanine (B)</p> Signup and view all the answers

Which of the following amino acid side chains can act as a bridging ligand between two metal ions in proteins?

<p>Thiolate of Cysteine (C)</p> Signup and view all the answers

Which of the following is NOT a common secondary structure motif found in proteins?

<p>Helical coil (A)</p> Signup and view all the answers

What is the typical configuration of the peptide bonds that link amino acids in protein chains?

<p>Trans (C)</p> Signup and view all the answers

What is the function of messenger RNA (mRNA)?

<p>Carrying genetic information from DNA to ribosomes (B)</p> Signup and view all the answers

What is the purpose of cloning in genetic engineering?

<p>Expressing cloned genes in cells to produce proteins for study (D)</p> Signup and view all the answers

What is Vmax in enzyme kinetics?

<p>The maximal rate of the reaction at saturating substrate levels (A)</p> Signup and view all the answers

What are the basic structures found in RNA and DNA, respectively?

<p>C2’ is endo to C5’ (DNA) and C3’-endo (RNA) (B)</p> Signup and view all the answers

What is the unit comprising only a sugar and a base called?

<p>Nucleoside (B)</p> Signup and view all the answers

What type of RNA carries amino acids to the ribosome during protein synthesis?

<p>Transfer RNA (tRNA) (B)</p> Signup and view all the answers

'Hoogsteen base pairing' is responsible for which structure?

<p>Linking two DNA strands into a double helix (D)</p> Signup and view all the answers

'Phosphodiester linkages' join adjacent residues to form what in nucleic acids?

<p>Sugar-phosphate polymer backbone (A)</p> Signup and view all the answers

'Watson-Crick base-pairing interactions' are responsible for what structure in DNA?

<p>'Double helix' (C)</p> Signup and view all the answers

'Nucleotides' contain sugar, base, and which other group?

<p>'Phosphate' (C)</p> Signup and view all the answers

What is the characteristic feature of B-DNA, the most common form of DNA?

<p>A right-handed double helix with major and minor grooves (C)</p> Signup and view all the answers

Which of the following statements about A-DNA is true?

<p>It has a C3'-endo sugar pucker (B)</p> Signup and view all the answers

What is a characteristic feature of Z-DNA?

<p>It is a left-handed variant seen for alternating purine-pyrimidine sequences (B)</p> Signup and view all the answers

Which of the following statements about metal binding in nucleic acids is correct?

<p>Purine N atoms are the best nucleophiles among the nucleic-acid base heteroatoms (B)</p> Signup and view all the answers

What is the role of magnesium ions in ATP binding and hydrolysis?

<p>Magnesium ions promote the hydrolysis of the high-energy phosphate bond in ATP and bind to the ADP thus formed (A)</p> Signup and view all the answers

What is the structure of chromatin in eukaryotic cells?

<p>A string of nucleosomes connected by linker DNA (A)</p> Signup and view all the answers

What is the significance of sulfur atoms in modified nucleosides like 4-thiouridine (s4U) in RNA?

<p>The sulfur atom can specifically bind to soft metal ions like Hg(II) or Pt(II) (A)</p> Signup and view all the answers

What is the role of prosthetic groups in metalloproteins?

<p>They are organic components that may also contain bound metal ions (A)</p> Signup and view all the answers

What is the metal ion present in the coenzyme cobalamin (vitamin B-12)?

<p>Cobalt(III) (B)</p> Signup and view all the answers

What is the role of chlorophylls in photosynthesis?

<p>They are magnesium complexes essential for photosynthesis (B)</p> Signup and view all the answers

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