Protein Structures and Functions Quiz

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Questions and Answers

What type of bonds primarily stabilize the structure of beta-sheets?

  • Ionic bonds between oppositely charged side chains
  • Hydrogen bonds perpendicular to the polypeptide chain (correct)
  • Hydrogen bonds parallel to the polypeptide chain
  • Disulfide bonds between cysteine residues

How do side chains in a beta-sheet typically arrange themselves?

  • Randomly distributed without any specific pattern
  • All pointing above the plane of the sheet
  • All pointing below the plane of the sheet
  • Alternating above and below the plane of the sheet (correct)

In what type of proteins are beta-sheets commonly found?

  • Exclusively in globular proteins such as enzymes
  • Exclusively in fibrous proteins such as silk fibroin
  • Only in membrane proteins acting as channels or receptors
  • In both fibrous proteins such as silk fibroin and globular proteins such as immunoglobulins (correct)

What is the key characteristic of the primary structure of a protein?

<p>The specific sequence of amino acids (C)</p> Signup and view all the answers

What primarily determines the specific sequence of amino acids in a protein's primary structure?

<p>The nucleotide sequence of the gene encoding the protein (B)</p> Signup and view all the answers

How does the primary structure variation impact protein function?

<p>It leads to variation in the protein folding pattern, properties, and biological activity. (D)</p> Signup and view all the answers

What is a key example highlighting the importance of a protein's 1° structure in achieving its function?

<p>The ability of haemoglobin to bind and transport oxygen. (C)</p> Signup and view all the answers

What is the effect of even a single change in the amino acid sequence in the primary structure of a protein?

<p>It can significantly alter the protein's structure and function. (B)</p> Signup and view all the answers

What is a key characteristic of polymorphisms in a population?

<p>They occur in more than 1% of individuals. (A)</p> Signup and view all the answers

How do mutations typically differ from polymorphisms in terms of their impact?

<p>Mutations usually have a significant biological impact (A)</p> Signup and view all the answers

Which type of genetic variation is most likely to provide an adaptive advantage?

<p>Polymorphisms resulting from evolutionary pressures. (A)</p> Signup and view all the answers

What defines an apoprotein?

<p>The polypeptide chain of a protein without its associated non-protein groups. (C)</p> Signup and view all the answers

Which of these is a characteristic of an holoprotein?

<p>It is a protein that includes all subunits and non-protein components necessary for its complete activity. (A)</p> Signup and view all the answers

What would apotransferrin require to become a fully functional protein?

<p>The binding of Fe3+ ions. (A)</p> Signup and view all the answers

What is the primary difference between a mutation and a polymorphism?

<p>Polymorphisms are more common and have less significant functional impact than mutations. (D)</p> Signup and view all the answers

Which of the following best describes an apoprotein of hemoglobin?

<p>The globin chains (alpha and beta subunits) without the heme (B)</p> Signup and view all the answers

What is the primary role of hemoglobin (Hb) in relation to blood pH when it releases oxygen to tissues?

<p>It binds H⁺ ions, helping to reduce blood acidity. (D)</p> Signup and view all the answers

How does the 'chloride shift' contribute to maintaining electrostatic balance in red blood cells (RBCs)?

<p>By transporting Cl⁻ ions into the RBC in exchange for HCO₃⁻ ions. (D)</p> Signup and view all the answers

What is the significance of the pKa of inorganic phosphate (7.2) in relation to its role as a buffer?

<p>It indicates it is ionised at intracellular pH so it can buffer H⁺ ions. (A)</p> Signup and view all the answers

How do plasma proteins like albumin contribute to blood buffering?

<p>By accepting or donating H⁺ ions depending on pH changes. (D)</p> Signup and view all the answers

What is the direct effect of increased carbon dioxide (CO₂) levels in the blood on blood pH?

<p>It increases the concentration of H⁺ ions, decreasing blood pH. (D)</p> Signup and view all the answers

According to the information provided, how does the phosphate buffer system respond when blood becomes too acidic?

<p>It binds H⁺ ions, forming H₂PO₄⁻ to reduce acidity. (D)</p> Signup and view all the answers

What is the primary mechanism by which proteins in the blood, such as albumin, respond to a basic (alkaline) pH?

<p>They release H⁺ ions, reducing alkalinity. (A)</p> Signup and view all the answers

What is the role of carbonic acid (H₂CO₃) in pH regulation by the lungs?

<p>It is the immediate product of the reaction of water and carbon dioxide in blood. (A)</p> Signup and view all the answers

What is a characteristic of nonconservative amino acid substitutions that often leads to mutations?

<p>They involve amino acids with very different properties, often affecting protein function. (D)</p> Signup and view all the answers

According to the Bronsted-Lowry definition, what is a base?

<p>A substance that accepts a proton. (D)</p> Signup and view all the answers

Why are mutations typically less frequent than polymorphisms?

<p>Mutations often disrupt normal cellular functions. (A)</p> Signup and view all the answers

What is the nature of a proton in an aqueous solution?

<p>It is rapidly picked up by water molecules to form hydronium ions. (A)</p> Signup and view all the answers

What is the main characteristic of weak electrolytes in an aqueous solution?

<p>They maintain an equilibrium between undissociated and dissociated forms. (C)</p> Signup and view all the answers

What type of mutation causes sickle cell anemia?

<p>A substitution mutation replacing glutamic acid with valine in the beta-globin protein. (C)</p> Signup and view all the answers

Which of the following is NOT considered a weak biological electrolyte?

<p>Hydrochloric acid (B)</p> Signup and view all the answers

How does the mutation in sickle cell anemia affect red blood cells?

<p>It causes red blood cells to form rigid fibers under low oxygen conditions, resulting in a sickle shape. (A)</p> Signup and view all the answers

What does the Henderson-Hasselbalch equation illustrate?

<p>The relationship between pH, pKa, and the ratio of acid to base. (D)</p> Signup and view all the answers

What type of mutation is primarily responsible for cystic fibrosis?

<p>A frameshift mutation caused by the deletion of one amino acid in the CFTR protein. (C)</p> Signup and view all the answers

In the Henderson-Hasselbalch equation, what does [HA] represent?

<p>The concentration of the protonated acid. (B)</p> Signup and view all the answers

What is the effect of the mutation in the CFTR gene that causes cystic fibrosis?

<p>It disrupts chloride ion transport, resulting in thicker, stickier mucus. (C)</p> Signup and view all the answers

What is the shape of a typical titration curve for a conjugate acid-base pair?

<p>Sigmoidal. (A)</p> Signup and view all the answers

What type of mutation is associated with Duchenne Muscular Dystrophy (DMD)?

<p>A frameshift mutation caused by a deletion of one amino acids in the dystrophin gene. (A)</p> Signup and view all the answers

What is the effect of proton tunnelling on proton movement?

<p>It accelerates the movement of protons. (A)</p> Signup and view all the answers

How do polymorphisms differ from mutations in terms of their impact on health?

<p>Polymorphisms are variations that do not typically cause disease, while mutations often result in disease. (A)</p> Signup and view all the answers

According to the Lewis definition, what is an acid?

<p>A substance that accepts an electron pair. (D)</p> Signup and view all the answers

What does pKa represent in the Henderson-Hasselbalch equation?

<p>The negative logarithm of the dissociation constant of the acid. (D)</p> Signup and view all the answers

What is the primary function of carbonic anhydrase in the context of the bicarbonate buffer system?

<p>To facilitate the reaction between CO₂ and H₂O to form H₂CO₃. (B)</p> Signup and view all the answers

In the bloodstream, when the pH becomes acidic, what is the immediate role of bicarbonate ions (HCO₃⁻)?

<p>They bind with excess H⁺ ions to form H₂CO₃. (C)</p> Signup and view all the answers

Although the pKa of H₂CO₃ is 3.8, how can it still act as an effective buffer at a physiological pH of 7.4?

<p>It is constantly replenished by the hydration of CO₂. (D)</p> Signup and view all the answers

Why is the bicarbonate buffer system described as an 'open' system?

<p>Because CO₂ can be continuously removed or replenished via the lungs. (A)</p> Signup and view all the answers

What is the approximate ratio of HCO₃⁻ to H₂CO₃ at a physiological pH, and what effect does this ratio have?

<p>Approximately 20:1, making the system very resistant to pH change. (B)</p> Signup and view all the answers

How does the concentration of CO₂ impact the bicarbonate buffer system?

<p>It serves as a reservoir for the buffer system, and can be adjusted by the lungs. (A)</p> Signup and view all the answers

Why is the further dissociation of HCO₃⁻ to CO₃²⁻ not a significant factor in physiological conditions?

<p>Because the pKa for that reaction is 9.8, which makes it negligible at physiological pH. (B)</p> Signup and view all the answers

What is the primary role of hemoglobin (Hb) in the haemoglobin buffer system?

<p>To bind or release H⁺, acting as a pH buffer. (A)</p> Signup and view all the answers

Flashcards

Arrhenius Acid

A substance that increases the concentration of hydronium ions (H3O+) in solution.

Lewis Acid

A substance that accepts an electron pair from another molecule, often described as an electron acceptor.

Brønsted-Lowry Acid

A substance that donates a proton (H+) to another molecule.

Arrhenius Base

A substance that increases the concentration of hydroxide ions (OH-) in solution.

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Lewis Base

A substance that donates an electron pair to another molecule, often described as an electron donor.

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Brønsted-Lowry Base

A substance that accepts a proton (H+) from another molecule.

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Proton

The hydrogen nucleus (H+) is a subatomic particle that readily combines with water molecules to form hydronium ions (H3O+).

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Strong Electrolytes

Electrolytes that dissociate completely in solution.

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Weak Electrolytes

Electrolytes that only partially dissociate in solution, reaching an equilibrium between dissociated and undissociated forms.

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Conjugate Acid-Base Pair

The equilibrium between the undissociated and dissociated forms of a weak electrolyte, consisting of the protonated form (HA) and the unprotonated form (A-).

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Hemoglobin Buffering System

Hemoglobin (Hb) binds and releases hydrogen ions (H+) and carbon dioxide (CO2) to help regulate blood acidity (pH).

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Phosphate Buffer System

This buffer system primarily affects the intracellular fluid and urine pH but also contributes to blood pH. It involves the equilibrium between dihydrogen phosphate (H2PO4-) and monohydrogen phosphate (HPO42-).

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Plasma Protein Buffer System

Proteins like albumin can accept or release H+ ions based on pH changes, acting as a buffer in blood.

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CO2 and pH Regulation

Carbon dioxide (CO2) produced during cellular respiration is transported in the blood and forms carbonic acid (H2CO3) which can release H+ ions, impacting blood pH.

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Mechanism of Phosphate Buffer System

When blood becomes acidic, HPO42- combines with H+ to form H2PO4-, reducing acidity. When blood is basic, H2PO4- releases H+ to increase acidity, striving for a balanced pH.

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Chloride Shift

This refers to the process where RBC's transport bicarbonate (HCO3-) out in exchange for chloride (Cl-) to maintain electrostatic balance.

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CO2 Transport by Hemoglobin

Hb binds CO2 to form carboxyhaemoglobin, which is transported to the lungs for exhalation.

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Mechanism of Plasma Protein Buffer System

Proteins like albumin can contribute by accepting H+ when blood is acidic or releasing H+ when blood is basic.

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Beta-Sheet Structure

A structural motif in proteins where polypeptide chains run alongside each other, forming a sheet-like structure. The side chains alternate above and below the plane of the sheet, allowing interactions with other molecules or protein regions.

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Primary Structure of Proteins

The sequential arrangement of amino acids linked together in a polypeptide chain, determined by the genetic code.

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Hydrogen Bonding in Beta-Sheets

Hydrogen bonds form between the carbonyl oxygen of one strand and the amide hydrogen of an adjacent strand in a beta-sheet, stabilizing the structure.

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Variation in Primary Structure

The unique sequence of amino acids in a protein determines its specific shape, folding pattern, and ultimately its biological function.

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Silk Fibroin

A fibrous protein found in spider silk, composed of beta-sheets.

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Amyloid Fibrils

A fibrous protein associated with Alzheimer's disease, composed of beta-sheets.

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Immunoglobulins

A globular protein, like antibodies, that has a beta-sheet core within its structure.

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Hydrophobic Interactions in Beta-Sheets

Non-polar side chains in beta-sheets can interact with each other through hydrophobic interactions, contributing to the stability of the structure, particularly when the beta-sheet is buried within the protein core.

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Carbonic Acid-Bicarbonate Buffer System

The carbonic acid-bicarbonate buffer system helps maintain blood pH within a narrow range. It involves the reversible reaction between carbon dioxide (CO₂), carbonic acid (H₂CO₃), and bicarbonate ions (HCO₃⁻).

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What role does carbonic anhydrase play in the buffer system?

Carbonic anhydrase is an enzyme found in red blood cells that speeds up the reaction between CO₂ and water, forming carbonic acid (H₂CO₃).

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Why is the bicarbonate buffer system considered an 'open' system?

Although H₂CO₃ is largely dissociated at physiological pH, it is constantly replenished by the hydration of CO₂ in the body, maintained by a dynamic equilibrium.

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Why is the effective buffering capacity of the bicarbonate system different than the pKa of H₂CO₃?

The effective buffering capacity of the bicarbonate system is not solely determined by the pKa of H₂CO₃ alone, but by the combined equilibria involving CO₂ and HCO₃⁻.

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What is the ratio of HCO₃⁻ to H₂CO₃ in the blood?

The ratio of HCO₃⁻ to H₂CO₃ in the blood is approximately 20:1, maintaining strong resistance to pH changes.

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How does CO₂ act as a regulator in the bicarbonate buffer system?

Dissolved CO₂ acts as a 'reservoir' for the bicarbonate buffer system, maintaining equilibrium with gaseous CO₂ in the lungs.

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How does the respiratory rate influence the bicarbonate buffer system?

The respiratory rate can be adjusted through hyperventilation (increased breathing) or hypoventilation (decreased breathing) to regulate the CO₂ concentration in the body, thereby influencing the pH of the blood.

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Why is the dissociation of HCO₃⁻ to carbonate (CO₃²⁻) insignificant in the bicarbonate buffer system?

The dissociation of HCO₃⁻ to carbonate (CO₃²⁻) is negligible at physiological pH due to its high pKa (9.8). This ensures that the bicarbonate buffering system operates within its optimal range.

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Mutation

A change in the DNA sequence that can alter the amino acid sequence of a protein.

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Polymorphism

A variation in DNA sequence that occurs in at least 1% of a population and usually doesn't cause disease.

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Nonconservative Substitutions

Changes in amino acid sequence that significantly alter protein function. Typically involve substitutions of amino acids with vastly different properties.

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Frameshift Mutation

Changes in a gene's DNA that cause premature termination of protein synthesis. Often result in non-functional or truncated proteins.

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Sickle Cell Anemia

A genetic disorder caused by a single nucleotide change in the HBB gene, resulting in the substitution of glutamic acid with valine at position 6 of the beta-globin chain.

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Cystic Fibrosis

A genetic disorder caused by mutations in the CFTR gene, leading to impaired chloride ion transport and thick, sticky mucus buildup in the lungs and digestive system.

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Duchenne Muscular Dystrophy (DMD)

A genetic disorder characterized by progressive muscle weakness and wasting caused by mutations in the DMD gene, resulting in the absence of functional dystrophin.

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Point Mutation

An amino acid substitution in a protein that can significantly alter its function, often leading to disease.

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Apoprotein

A protein that lacks its essential non-protein components (prosthetic groups), rendering it inactive.

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Holoprotein

The functional form of a protein, containing its complete polypeptide chain and all non-protein groups (prosthetic groups) required for activity.

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Prosthetic Groups

Non-protein molecules that associate with proteins, often essential for their activity.

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Single Nucleotide Polymorphism (SNP)

A type of polymorphism involving a single nucleotide change in the DNA sequence.

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Copy Number Variations (CNVs)

Variations in the number of copies of a particular gene or DNA segment.

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