Protein Structure: Physical and Modeling Methods Quiz

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Which method is used for de novo prediction and ab initio modeling?

I-TASSER (correct)

Swiss-Model

Phyre2

Modeller

Which method focuses on sorting similar structures using 'blastp'?

Modeller

I-TASSER (correct)

Rosetta protein folding platform

Swiss-Model

Which method utilizes the strategy assumption that protein folding is not random and considers local secondary structures, ionic interactions, and hydrophobic interactions?

Robetta protein folding (correct)

Phyre2

Swiss-Model

I-TASSER

Which method is associated with the Nature Methods paper by J Yang, R Yan, A Roy, D Xu, J Poisson, Y Zhang in 2015?

I-TASSER Signup and view all the answers

What is the strategy used for protein structure prediction in Rosetta?

Generating short peptide folds and clustering them based on energy values Signup and view all the answers

What is the role of chaperons in protein folding?

Help in avoiding folding traps Signup and view all the answers

What is the main feature of Intrinsic Disordered Proteins (IDPs)?

Rich in Prolines and Glycines Signup and view all the answers

What is the purpose of using DALI or PDBefold in protein structure prediction?

To find similar structures for fold recognition Signup and view all the answers

What is the significance of energy values in protein structure prediction?

Determining the stability of predicted structures Signup and view all the answers

What is Levinthal's Paradox related to?

The role of interactions in bio-molecular reactions Signup and view all the answers

What type of proteins require conformational changes and dynamic interactions with other proteins?

Intrinsic Disordered Proteins (IDPs) Signup and view all the answers

Protein Structure: Physical and Modeling Methods Quiz

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Questions and Answers

Which method is used for de novo prediction and ab initio modeling?

Which method focuses on sorting similar structures using 'blastp'?

Which method utilizes the strategy assumption that protein folding is not random and considers local secondary structures, ionic interactions, and hydrophobic interactions?

Which method is associated with the Nature Methods paper by J Yang, R Yan, A Roy, D Xu, J Poisson, Y Zhang in 2015?

What is the strategy used for protein structure prediction in Rosetta?

What is the role of chaperons in protein folding?

What is the main feature of Intrinsic Disordered Proteins (IDPs)?

What is the purpose of using DALI or PDBefold in protein structure prediction?

What is the significance of energy values in protein structure prediction?

What is Levinthal's Paradox related to?

What type of proteins require conformational changes and dynamic interactions with other proteins?

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