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Questions and Answers
Which of the following techniques is NOT used to determine secondary structure?
Which of the following techniques is NOT used to determine secondary structure?
What is a characteristic feature of the α-helix structure?
What is a characteristic feature of the α-helix structure?
What amino acids make up glutathione?
What amino acids make up glutathione?
Which functional group is associated with glutathione?
Which functional group is associated with glutathione?
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Which of the following best describes antiparallel β-sheets?
Which of the following best describes antiparallel β-sheets?
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What role do β-bends play in protein structure?
What role do β-bends play in protein structure?
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What is the primary function of glutathione related to hydrogen peroxide?
What is the primary function of glutathione related to hydrogen peroxide?
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What characterizes the tertiary structure of proteins?
What characterizes the tertiary structure of proteins?
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What does the primary structure of a protein refer to?
What does the primary structure of a protein refer to?
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Which technique is NOT used to determine the primary structure of a protein?
Which technique is NOT used to determine the primary structure of a protein?
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Which bond is primarily responsible for maintaining a protein's secondary structure?
Which bond is primarily responsible for maintaining a protein's secondary structure?
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Which of the following is NOT a function of glutathione?
Which of the following is NOT a function of glutathione?
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What characterizes a protein's tertiary structure?
What characterizes a protein's tertiary structure?
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What color does proline produce when it reacts with ninhydrin?
What color does proline produce when it reacts with ninhydrin?
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Which reaction is specific to phenolic amino acids?
Which reaction is specific to phenolic amino acids?
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What is the product when tyrosine reacts with mercuric salts in Millon's reaction?
What is the product when tyrosine reacts with mercuric salts in Millon's reaction?
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Which reaction can lead to the formation of a purple ring with tryptophan?
Which reaction can lead to the formation of a purple ring with tryptophan?
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What type of peptide consists of 2 amino acids linked by one peptide bond?
What type of peptide consists of 2 amino acids linked by one peptide bond?
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Which peptide contains 29 amino acids and is known for its regulatory function in glucose metabolism?
Which peptide contains 29 amino acids and is known for its regulatory function in glucose metabolism?
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What is the primary effect of the atrial natriuretic factor (ANF)?
What is the primary effect of the atrial natriuretic factor (ANF)?
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Which of these peptides is known as an antibiotic that consists of cysteine and D-valine residues?
Which of these peptides is known as an antibiotic that consists of cysteine and D-valine residues?
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What is the primary role of glucagon in the body during fasting?
What is the primary role of glucagon in the body during fasting?
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Which hormone is secreted by parathyroid glands during hypocalcemia?
Which hormone is secreted by parathyroid glands during hypocalcemia?
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How many amino acids make up the hormone calcitonin?
How many amino acids make up the hormone calcitonin?
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What is the function of fibrillin in the body?
What is the function of fibrillin in the body?
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Which technique separates proteins based on their sizes and densities?
Which technique separates proteins based on their sizes and densities?
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Which of the following is true about the precipitation method of protein separation?
Which of the following is true about the precipitation method of protein separation?
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What type of protein is fibronectin?
What type of protein is fibronectin?
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What does the dialysis method separate in a mixture?
What does the dialysis method separate in a mixture?
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What is the primary function of collagen in the body?
What is the primary function of collagen in the body?
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What happens during a negative nitrogen balance?
What happens during a negative nitrogen balance?
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Which of the following is not a function of proteins?
Which of the following is not a function of proteins?
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What type of molecule are immunoglobulins classified as?
What type of molecule are immunoglobulins classified as?
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Which amino acid classification does not have a net charge at neutral pH?
Which amino acid classification does not have a net charge at neutral pH?
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Which of the following amino acids has a unique imino group?
Which of the following amino acids has a unique imino group?
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Which of these proteins is known to be part of blood clotting?
Which of these proteins is known to be part of blood clotting?
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How many of the discovered amino acids are coded for by DNA in mammals?
How many of the discovered amino acids are coded for by DNA in mammals?
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What type of proteins are characterized by their compact forms resulting from the folding of polypeptide chains?
What type of proteins are characterized by their compact forms resulting from the folding of polypeptide chains?
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Which type of bond is NOT responsible for maintaining the tertiary structure of proteins?
Which type of bond is NOT responsible for maintaining the tertiary structure of proteins?
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Which of the following is an example of a fibrous protein?
Which of the following is an example of a fibrous protein?
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Which forces contribute to the stability of quaternary structure in proteins?
Which forces contribute to the stability of quaternary structure in proteins?
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Chaperones are known for which primary function in protein folding?
Chaperones are known for which primary function in protein folding?
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What does salting in refer to in the context of protein solubility?
What does salting in refer to in the context of protein solubility?
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Which of the following proteins is known to lose function when its subunits are dissociated?
Which of the following proteins is known to lose function when its subunits are dissociated?
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Which type of proteins are typically water insoluble due to their non-polar side chains?
Which type of proteins are typically water insoluble due to their non-polar side chains?
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Flashcards
What are proteins?
What are proteins?
Proteins are large polymers made up of chains of amino acids. They are crucial for many functions in living organisms.
How many standard amino acids are there?
How many standard amino acids are there?
The 20 standard amino acids are the ones that are coded by DNA and are used in building mammalian proteins.
What are the components of an amino acid?
What are the components of an amino acid?
They have a carboxyl group (COOH), an amino group (NH2), a unique side chain (R), and a hydrogen atom attached to the central carbon atom.
What are non-polar amino acids?
What are non-polar amino acids?
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What are uncharged polar amino acids?
What are uncharged polar amino acids?
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What are the main functions of proteins?
What are the main functions of proteins?
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What is nitrogen balance?
What is nitrogen balance?
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What is negative nitrogen balance?
What is negative nitrogen balance?
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3-Decarboxylation
3-Decarboxylation
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Ninhydrin Reaction
Ninhydrin Reaction
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Biuret's Reaction
Biuret's Reaction
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Millon's Reaction
Millon's Reaction
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Xanthoproteic Reaction
Xanthoproteic Reaction
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Rosenheim Test
Rosenheim Test
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Peptides
Peptides
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Peptide Bond
Peptide Bond
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What is glutathione (G-SH)?
What is glutathione (G-SH)?
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What's the functional group of glutathione?
What's the functional group of glutathione?
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What are the forms of glutathione?
What are the forms of glutathione?
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What is a protein?
What is a protein?
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What is the conformation of a protein?
What is the conformation of a protein?
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What is the primary structure of a protein?
What is the primary structure of a protein?
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What bond is responsible for the primary structure of a protein?
What bond is responsible for the primary structure of a protein?
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What is the secondary structure of a protein?
What is the secondary structure of a protein?
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Globular proteins
Globular proteins
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Fibrous proteins
Fibrous proteins
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Tertiary structure bonds
Tertiary structure bonds
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Quaternary structure
Quaternary structure
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Bonds in quaternary structure
Bonds in quaternary structure
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Chaperones
Chaperones
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Water-soluble proteins
Water-soluble proteins
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Water-insoluble proteins
Water-insoluble proteins
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Circular Dichroism (CD) spectroscopy
Circular Dichroism (CD) spectroscopy
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Fourier Transform Infrared (FTIR) Spectroscopy
Fourier Transform Infrared (FTIR) Spectroscopy
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What is an alpha-helix?
What is an alpha-helix?
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What is a beta-sheet?
What is a beta-sheet?
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What are Loop regions?
What are Loop regions?
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Glucagon - What is it and what does it do?
Glucagon - What is it and what does it do?
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Parathyroid Hormone (PTH) - What is it and what does it do?
Parathyroid Hormone (PTH) - What is it and what does it do?
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Calcitonin - What is it and what does it do?
Calcitonin - What is it and what does it do?
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Fibrillin - What is it, where is it, and what's its role?
Fibrillin - What is it, where is it, and what's its role?
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Fibronectin - What is it and what does it do?
Fibronectin - What is it and what does it do?
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Chromatography - How does it work?
Chromatography - How does it work?
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Electrophoresis - What is it?
Electrophoresis - What is it?
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Ultracentrifugation - How does it work?
Ultracentrifugation - How does it work?
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Study Notes
Proteins and Amino Acids
- Proteins are large polymers of L-amino acids
- Proteins are the most abundant and functionally important molecules in living systems.
- Main functions of proteins include:
- Structural functions: Collagen in bones, elastin in lungs
- Enzymes: Pepsin, lipase, urease
- Hormones: Growth hormone, insulin, glucagon, oxytocin
- Transporters: Lipoproteins, hemoglobin
- Blood clotting factors: Fibrinogen, prothrombin
- Receptors: Insulin receptor
- Defence molecules: Immunoglobulins (IgM, IgA, IgG, IgE, IgD)
- Storage: Myoglobin (oxygen), ferritin (iron)
- Contractile proteins: Actin, tubulin
- Nitrogen balance:
- Nitrogen intake equals nitrogen loss (balanced)
- Nitrogen intake greater than loss (positive) e.g. growing children, pregnancy
- Nitrogen intake less than loss (negative) e.g. fasting, starvation, disease
- Over 300 amino acids exist in nature, but only 20 are common in mammalian proteins.
- These 20 amino acids are coded for by DNA
Structure of Amino Acids
- Each amino acid has a central carbon atom (α-carbon) bonded to:
- A carboxyl group (COOH)
- An amino group (NH2)
- A hydrogen atom
- A variable side chain (R group)
- Proline has a secondary amino group (imino group)
Classification of Amino Acids
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Amino acids are classified based on chemical structure, nutritional importance, and metabolic fate.
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- Amino acids with non-polar side chains (hydrophobic): Glycine, alanine, valine, leucine, isoleucine, phenylalanine, tryptophan, methionine, proline
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- Amino acids with uncharged polar side chains: These have zero net charge at a neutral pH. Serine, threonine, tyrosine, asparagine, glutamine, cysteine
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- Amino acids with charged polar side chains, which are either acidic or basic: These amino acids are either negatively (acidic) or positively (basic) charged. Aspartic acid, glutamic acid, lysine, arginine, histidine
Summary of Chemical Classification of Amino Acids (Table)
- Glycine, Alanine, Valine, Leucine, Isoleucine, Phenylalanine, Tryptophan, Methionine, and Proline: Non-polar amino acids
- Serine, Threonine, Tyrosine, Cysteine, Asparagine, and Glutamine: Polar neutral amino acids
- Aspartic acid, Glutamic acid, Lysine, Arginine, and Histidine: Polar charged amino acids
- Phenylalanine, Tryptophan, Tyrosine: Aromatic amino acids
- Serine, Threonine, Tyrosine, Cysteine, Asparagine, and Glutamine: Alcohlic OH amino acids
- Other amino acids: based on their characteristics.
1- Essential Amino Acids (8)
- Cannot be synthesized in the body
- Need to be obtained from diet, these include: Histidine, Isoleucine, Leucine, Lysine, Methionine, Phenylalanine, Threonine, Tryptophan, Valine
2- Semi-Essential Amino Acids (2)
- Synthesized in the body, but not in enough amounts for growing children. These include: Arginine, Histidine
3- Non-Essential Amino Acids (10)
- Synthesized in the body in sufficient quantities, these include: Alanine, Asparagine, Aspartic acid, cysteine, Glutamic acid, Glutamine, Glycine, Proline, Serine, Tyrosine
Metabolic Classification of Amino Acids
- Ketogenic: Leucine (only pure ketogenic amino acid), can be used for energy, forming ketone bodies(only one)
- Ketogenic and Glucogenic (glycogenic): phenylalanine, tyrosine, tryptophan, lysine, threonine, can be used for both energy and glucose production
- Glucogenic (glycogenic): All others used for energy and glucose production.
Protein Reactions, classification of proteins
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Protein denaturation, breaking down of peptide structures, primarily proteins
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Important features about denaturation of proteins
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Chemical changes like H-bonds, S-S bonds, and ionic interactions are broken.
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All protein levels (except primary) are lost.
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Biological activity is lost.
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Denatured protein is insoluble.
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Denaturation can be reversible or irreversible.
Protein Structures
- Primary: Sequence of amino acids
- Secondary: Formation of alpha-helices and beta-sheets; hydrogen bond formation
- Tertiary: Three-dimensional structure of a polypeptide chain; formation of bonds within or between segments
- Quaternary: Structure of a multi-subunit protein; multiple tertiary protein assemblies
Fibrous Proteins
- Extended form proteins: e.g., Keratin, Collagen, Myosin
- Bonds in fibrous structures: hydrogen bonds, hydrophobic interactions, disulfide bonds, ionic interactions,
- Characteristics: Structural role, water insoluble, strong, and fibrous.
Globular Proteins
- Spherical shape;
- Examples: (albumins, globulins, protamines, histones, etc.)
Conjugated Proteins
- Composed of protein and non-protein components: eg. Nucleoproteins, lipoprotein, glycoproteins, phosphoproteins, metalloproteins.
- These components provide various functional roles.
Methods of Protein Separation
- Chromatography
- Electrophoresis
- Precipitation
- Ultracentrifugation
- Dialysis
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Description
Test your knowledge on protein structure, particularly the secondary and tertiary structures, as well as the functions of amino acids like glutathione. This quiz covers key concepts, techniques utilized in protein analysis, and specific reactions related to amino acids. Challenge yourself and see how well you understand these important biochemical topics!