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Questions and Answers
What effect does competitive inhibition have on the Km value?
What effect does competitive inhibition have on the Km value?
In non-competitive inhibition, where does the inhibitor bind to the enzyme?
In non-competitive inhibition, where does the inhibitor bind to the enzyme?
What happens to the Vmax value in non-competitive inhibition?
What happens to the Vmax value in non-competitive inhibition?
In uncompetitive inhibition, when does the inhibitor bind to the enzyme?
In uncompetitive inhibition, when does the inhibitor bind to the enzyme?
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What is the primary effect of uncompetitive inhibition on Vmax and Km?
What is the primary effect of uncompetitive inhibition on Vmax and Km?
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Which type of inhibition involves binding at a site other than the active site?
Which type of inhibition involves binding at a site other than the active site?
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What is the term used to refer to intact enzymes with their bound cofactors?
What is the term used to refer to intact enzymes with their bound cofactors?
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Which complex is also known as NADH dehydrogenase or NADH oxireductase?
Which complex is also known as NADH dehydrogenase or NADH oxireductase?
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In enzyme kinetics, what term is used to describe the rate or velocity of a reaction?
In enzyme kinetics, what term is used to describe the rate or velocity of a reaction?
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What is the initial velocity (v0) in enzyme kinetics?
What is the initial velocity (v0) in enzyme kinetics?
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Which type of enzymes follow a second-order reaction in enzyme kinetics?
Which type of enzymes follow a second-order reaction in enzyme kinetics?
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What does ATP hydrolysis result in?
What does ATP hydrolysis result in?
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What is the main role of a catalyst in a chemical reaction?
What is the main role of a catalyst in a chemical reaction?
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How do catalysts affect the activation energy of a reaction?
How do catalysts affect the activation energy of a reaction?
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Why do living systems, like biological organisms, rely on catalysts like enzymes to increase reaction rates?
Why do living systems, like biological organisms, rely on catalysts like enzymes to increase reaction rates?
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What type of bond is formed during the creation of peptide bonds?
What type of bond is formed during the creation of peptide bonds?
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In the formation of peptides, what is the function of peptidyl transferase?
In the formation of peptides, what is the function of peptidyl transferase?
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What was discovered by Linus Pauling related to C-N bonds in amino acids?
What was discovered by Linus Pauling related to C-N bonds in amino acids?
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What effect does a decrease in pH have on oxygen binding to hemoglobin?
What effect does a decrease in pH have on oxygen binding to hemoglobin?
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Which molecule besides oxygen can lower the oxygen binding affinity of hemoglobin?
Which molecule besides oxygen can lower the oxygen binding affinity of hemoglobin?
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Which type of hemoglobin is predominant in adult humans?
Which type of hemoglobin is predominant in adult humans?
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What is the function of 2,3-bisphosphoglycerate (BPG) in relation to hemoglobin?
What is the function of 2,3-bisphosphoglycerate (BPG) in relation to hemoglobin?
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How does an increase in CO2 affect the pH and oxygen binding to hemoglobin?
How does an increase in CO2 affect the pH and oxygen binding to hemoglobin?
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What is the role of 2,3-bisphosphoglycerate (BPG) when energy demand is high?
What is the role of 2,3-bisphosphoglycerate (BPG) when energy demand is high?
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What type of conditions can lead to protein denaturation?
What type of conditions can lead to protein denaturation?
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Which structure of a protein is disrupted during denaturation?
Which structure of a protein is disrupted during denaturation?
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What is the primary function of myoglobin?
What is the primary function of myoglobin?
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In which state is deoxygenated hemoglobin considered?
In which state is deoxygenated hemoglobin considered?
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What is the composition of an HbA molecule in red blood cells?
What is the composition of an HbA molecule in red blood cells?
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What stabilizes the oxygen binding site in hemoglobin?
What stabilizes the oxygen binding site in hemoglobin?
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What causes hemoglobin to alternate between the T and R states?
What causes hemoglobin to alternate between the T and R states?
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Study Notes
Enzyme Inhibition
- Competitive inhibition increases Km value, meaning more substrate is needed to reach half-maximal velocity.
- In non-competitive inhibition, the inhibitor binds to an allosteric site, not the active site of the enzyme.
- Vmax remains unchanged in non-competitive inhibition as the maximum reaction rate can still be achieved but at different substrate concentrations.
- Uncompetitive inhibition occurs when the inhibitor binds to the enzyme-substrate complex, preventing the reaction from proceeding.
- Uncompetitive inhibition decreases both Vmax and Km, as it stabilizes the enzyme-substrate complex but reduces the overall capacity for product formation.
- Non-competitive inhibition involves binding at a site other than the active site, affecting enzyme activity without competing with the substrate for binding.
Enzyme Composition and Complexes
- Intact enzymes bound to their cofactors are referred to as holoenzymes.
- The complex known as NADH dehydrogenase or NADH oxireductase is involved in electron transport and energy production.
Enzyme Kinetics
- The term "velocity" describes the rate at which a reaction occurs in enzyme kinetics.
- The initial velocity (v0) in enzyme kinetics refers to the rate of reaction at the very start, often measured when substrate concentration is at its maximum.
- Second-order reaction kinetics typically applies to enzymes that catalyze reactions involving two substrates.
Catalysis and Reaction Rates
- ATP hydrolysis results in the release of energy, which is fundamental for cellular processes.
- A catalyst lowers the activation energy required for a reaction to proceed, thereby accelerating the reaction rate.
- Living organisms rely on catalysts like enzymes to increase reaction rates to sustain life, as most biochemical reactions are too slow without them.
Protein Structure and Function
- Peptide bonds form during protein synthesis, creating covalent links between amino acids.
- Peptidyl transferase catalyzes the formation of peptide bonds during translation.
- Linus Pauling discovered that C-N bonds in amino acids are not rigid, allowing for conformational flexibility in proteins.
Hemoglobin and Oxygen Binding
- A decrease in pH reduces hemoglobin's oxygen binding affinity, promoting oxygen release to tissues.
- 2,3-bisphosphoglycerate (BPG) is another molecule, in addition to CO2, that can lower hemoglobin's oxygen affinity.
- Hemoglobin type predominant in adult humans is HbA, composed of two alpha and two beta chains.
- 2,3-bisphosphoglycerate (BPG) functions to facilitate oxygen release, especially during high energy demand situations.
- Increased CO2 lowers pH and further decreases oxygen binding affinity of hemoglobin, promoting oxygen delivery to metabolically active tissues.
Protein Denaturation
- Conditions such as extreme pH, high temperature, or harsh solvents can lead to protein denaturation.
- During denaturation, primarily the secondary and tertiary structures of proteins are disrupted, resulting in loss of function.
Myoglobin and Hemoglobin States
- The primary function of myoglobin is to store and transport oxygen in muscle tissues.
- Deoxygenated hemoglobin is referred to as being in the T (tense) state, which has a lower affinity for oxygen.
- The oxygen binding site in hemoglobin is stabilized by interactions with surrounding amino acids.
- Hemoglobin alternates between T and R (relaxed) states in response to changes in oxygen concentration and binding events.
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Description
Test your knowledge on the properties of enzymes, catalysts that enhance the rate of biochemical reactions without being permanently altered. Explore how enzymes modify reaction pathways to lower activation energy and increase reaction rates through temperature, reactants, and catalysts.