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Questions and Answers
Why is image preprocessing important for analyzing fundus images using CNNs?
Why is image preprocessing important for analyzing fundus images using CNNs?
- It reduces the resolution of the images, making the CNN process faster.
- It enhances image quality, leading to more reliable and accurate results from the CNN. (correct)
- It automatically segments the optic disc, reducing the computational load on the CNN.
- It eliminates the need for large datasets, as the CNN can learn from fewer images.
Which of the following is NOT a category mentioned to classify the greyscale fundus images?
Which of the following is NOT a category mentioned to classify the greyscale fundus images?
- Normal
- Early Glaucoma
- Advanced Glaucoma (correct)
- Moderate
What type of camera is used to capture the fundus images?
What type of camera is used to capture the fundus images?
- Nidek AFC-210 (correct)
- Smartphone Camera
- Endoscopic Camera
- DSLR Camera
Besides images from G1020 and DRISHTI-GS, where else were training images collected from?
Besides images from G1020 and DRISHTI-GS, where else were training images collected from?
Why is grayscale image modality useful in the context of fundus images?
Why is grayscale image modality useful in the context of fundus images?
If a researcher aims to improve the robustness of their CNN architecture for analyzing fundus images, which of the following steps would be MOST beneficial based directly on content?
If a researcher aims to improve the robustness of their CNN architecture for analyzing fundus images, which of the following steps would be MOST beneficial based directly on content?
A new fundus image is categorized as 'deep'. Based on the context, what does this classification likely indicate?
A new fundus image is categorized as 'deep'. Based on the context, what does this classification likely indicate?
Why is it beneficial to combine datasets like G1020, DRISHTI-GS, ORIGA, and RIM-ONE in training a CNN for fundus image analysis?
Why is it beneficial to combine datasets like G1020, DRISHTI-GS, ORIGA, and RIM-ONE in training a CNN for fundus image analysis?
Approximately how many people were affected by glaucoma worldwide in 2020?
Approximately how many people were affected by glaucoma worldwide in 2020?
What is the projected number of people affected by glaucoma worldwide by the year 2040?
What is the projected number of people affected by glaucoma worldwide by the year 2040?
Which type of glaucoma affects nearly 57.5 million people worldwide?
Which type of glaucoma affects nearly 57.5 million people worldwide?
Which statement accurately reflects the prevalence of open-angle glaucoma compared to other types?
Which statement accurately reflects the prevalence of open-angle glaucoma compared to other types?
If current trends continue, what is the expected net increase in the number of glaucoma cases worldwide between 2020 and 2040?
If current trends continue, what is the expected net increase in the number of glaucoma cases worldwide between 2020 and 2040?
Which of the following can be reliably concluded based on the data provided?
Which of the following can be reliably concluded based on the data provided?
Given only the information available, what percentage of global glaucoma cases in 2020 are not classified as open-angle glaucoma?
Given only the information available, what percentage of global glaucoma cases in 2020 are not classified as open-angle glaucoma?
A public health initiative aims to reduce the projected number of glaucoma cases in 2040 by 10%. How many cases would the initiative need to prevent to achieve this goal?
A public health initiative aims to reduce the projected number of glaucoma cases in 2040 by 10%. How many cases would the initiative need to prevent to achieve this goal?
Which deep learning architecture, when ensembled with GoogleNet achieved a high accuracy of 95.8% specifically for optic disc (OD) segmentation on the ACRIMA dataset?
Which deep learning architecture, when ensembled with GoogleNet achieved a high accuracy of 95.8% specifically for optic disc (OD) segmentation on the ACRIMA dataset?
Which of these deep learning models that use local datasets achieved the HIGHEST accuracy?
Which of these deep learning models that use local datasets achieved the HIGHEST accuracy?
What is a key difference between the study by Juneja et al. and the study by Serte et al.?
What is a key difference between the study by Juneja et al. and the study by Serte et al.?
A researcher aims to replicate the work of Thakoor et al. but only has access to 500 images. How might this impact the expected outcome?
A researcher aims to replicate the work of Thakoor et al. but only has access to 500 images. How might this impact the expected outcome?
Which study reported 100% specificity?
Which study reported 100% specificity?
Which of the following statements accurately compares the methodologies of ResNet and U-Net as described?
Which of the following statements accurately compares the methodologies of ResNet and U-Net as described?
If a clinic wants to implement a deep learning model for glaucoma detection with high sensitivity, which metric should they prioritize when evaluating different models?
If a clinic wants to implement a deep learning model for glaucoma detection with high sensitivity, which metric should they prioritize when evaluating different models?
A research team is comparing the performance of their new deep learning model against existing models. They find that their model has a slightly lower accuracy than the model by Thakoor et al. (96.27%) and Maheshwari et al. (98.90%). What additional metric would provide the MOST valuable insight into the practical utility of their model?
A research team is comparing the performance of their new deep learning model against existing models. They find that their model has a slightly lower accuracy than the model by Thakoor et al. (96.27%) and Maheshwari et al. (98.90%). What additional metric would provide the MOST valuable insight into the practical utility of their model?
What is a primary disadvantage of using models with a large number of layers in a clinical setting?
What is a primary disadvantage of using models with a large number of layers in a clinical setting?
Why is transfer learning preferred over training a model from scratch when classifying clinical images?
Why is transfer learning preferred over training a model from scratch when classifying clinical images?
How does the pre-trained ResNet-50 architecture contribute to the classification of images in the context of the content?
How does the pre-trained ResNet-50 architecture contribute to the classification of images in the context of the content?
What is the main advantage of using pre-trained models like ResNet-50 in CNN architectures for diagnostic results?
What is the main advantage of using pre-trained models like ResNet-50 in CNN architectures for diagnostic results?
Which factor is primarily addressed by applying transfer learning in medical image classification?
Which factor is primarily addressed by applying transfer learning in medical image classification?
What distinguishes ResNet-50 from its predecessors, ResNet-18 and ResNet-34?
What distinguishes ResNet-50 from its predecessors, ResNet-18 and ResNet-34?
What is a key application area where ResNet-50 has demonstrated excellent results?
What is a key application area where ResNet-50 has demonstrated excellent results?
How many layers does the ResNet-50 architecture contain, and what capability does this facilitate?
How many layers does the ResNet-50 architecture contain, and what capability does this facilitate?
Which of the following best describes a 'true negative' in the context of classifying fundus images for glaucoma detection?
Which of the following best describes a 'true negative' in the context of classifying fundus images for glaucoma detection?
In the described methodology for glaucoma detection, what initial step is taken with fundus images before further processing?
In the described methodology for glaucoma detection, what initial step is taken with fundus images before further processing?
What primary purpose does the application of data augmentation serve in the context of glaucoma detection using fundus images?
What primary purpose does the application of data augmentation serve in the context of glaucoma detection using fundus images?
In the context of evaluating a model for glaucoma detection, what does the term 'sensitivity' primarily measure?
In the context of evaluating a model for glaucoma detection, what does the term 'sensitivity' primarily measure?
Beyond image recognition and object localization, what additional application is ResNet-50 commonly utilized for?
Beyond image recognition and object localization, what additional application is ResNet-50 commonly utilized for?
How does data augmentation primarily assist in the development of a diagnostic system when dealing with limited datasets?
How does data augmentation primarily assist in the development of a diagnostic system when dealing with limited datasets?
What is a key advantage of using fundus images in glaucoma diagnosis, according to the content?
What is a key advantage of using fundus images in glaucoma diagnosis, according to the content?
Why are fundus images in the gray channel preferred for depicting lesions?
Why are fundus images in the gray channel preferred for depicting lesions?
What problem does the use of data augmentation primarily address when training deep learning models with limited fundus images?
What problem does the use of data augmentation primarily address when training deep learning models with limited fundus images?
How does a pre-trained model contribute to the development of a fast and reliable diagnostic system?
How does a pre-trained model contribute to the development of a fast and reliable diagnostic system?
Which characteristic of the new task is emphasized as being addressed by the use of pre-trained models and data augmentation?
Which characteristic of the new task is emphasized as being addressed by the use of pre-trained models and data augmentation?
Which of the following is a direct benefit of using data augmentation techniques?
Which of the following is a direct benefit of using data augmentation techniques?
What do the G1020, RIM-ONE, ORIGA, and DRISHTI-GS datasets contain?
What do the G1020, RIM-ONE, ORIGA, and DRISHTI-GS datasets contain?
Flashcards
What is Glaucoma?
What is Glaucoma?
Eye disease affecting millions worldwide.
Glaucoma affected in 2020
Glaucoma affected in 2020
Approximate number of people affected by glaucoma in 2020 worldwide.
Glaucoma in 2040
Glaucoma in 2040
Projected number of people affected by glaucoma by the year 2040.
Open-angle glaucoma
Open-angle glaucoma
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Open-angle glaucoma affected
Open-angle glaucoma affected
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What Glaucoma Damages
What Glaucoma Damages
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Elevated Eye Pressure
Elevated Eye Pressure
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Glaucoma Screening
Glaucoma Screening
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Image Preprocessing
Image Preprocessing
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Fundus Camera
Fundus Camera
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Glaucoma Categories
Glaucoma Categories
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Grayscale Images
Grayscale Images
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Ocular Hypertension
Ocular Hypertension
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Public Datasets
Public Datasets
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Grayscale Image Modality
Grayscale Image Modality
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CNN Architecture
CNN Architecture
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Deeper Models: Training Time?
Deeper Models: Training Time?
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What is transfer learning?
What is transfer learning?
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Training Models: From Scratch?
Training Models: From Scratch?
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Benefits of Transfer Learning?
Benefits of Transfer Learning?
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Transfer Learning Approach:
Transfer Learning Approach:
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What is ResNet?
What is ResNet?
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What is ORIGA?
What is ORIGA?
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What does AUC mean?
What does AUC mean?
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What is U-Net?
What is U-Net?
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What is DRISHTI-GS?
What is DRISHTI-GS?
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What is image segmentation?
What is image segmentation?
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What is CNN?
What is CNN?
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What is HRF?
What is HRF?
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ResNet-50
ResNet-50
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Skip Connections
Skip Connections
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1x1 Convolution Layer
1x1 Convolution Layer
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ResNet-50 Applications
ResNet-50 Applications
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Glaucoma Detection Methodology Steps
Glaucoma Detection Methodology Steps
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True Positive
True Positive
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True Negative
True Negative
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Evaluating Glaucoma Detection
Evaluating Glaucoma Detection
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Transfer Learning
Transfer Learning
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Data Augmentation
Data Augmentation
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Overfitting
Overfitting
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Fundus Images
Fundus Images
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Segmented Images
Segmented Images
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Glaucoma
Glaucoma
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Optic Disc (OD)
Optic Disc (OD)
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Gray Channel
Gray Channel
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Study Notes
- Glaucoma is characterized by increased intraocular pressure and optic nerve damage, leading to irreversible blindness.
- Early-stage detection is crucial to avoid the drastic effects of glaucoma.
- Glaucoma is frequently detected at an advanced stage in the elderly.
- Manual assessment methods are costly, time-consuming, and require skilled ophthalmologists.
- There is no definitive diagnostic technique for early-stage glaucoma.
- An automatic deep learning method is presented for detecting early-stage glaucoma with high accuracy.
- The technique identifies patterns in retinal images often overlooked by clinicians.
- The method uses gray channels of fundus images and data augmentation to train a convolutional neural network model.
- The ResNet-50 architecture is used.
- Datasets used: G1020, RIM-ONE, ORIGA, and DRISHTI-GS.
- The proposed model helps clinicians diagnose early-stage glaucoma for timely interventions.
- Keywords: glaucoma, fundus images, deep learning, early-stage detection, augmentation.
Introduction
- Major eye components for vision: cornea, pupil, iris, lens, retina, optic nerve, and tears.
- The iris controls the amount of light entering the eye.
- The retina converts light into electrical signals, which are sent to the brain.
- The optic nerve transmits visual signals (1 million nerve fibers) from the retina to the occipital cortex.
- Aqueous humor is a fluid in the eye that is continuously recycled.
- Obstruction of aqueous humor drainage increases intraocular pressure (IOP).
- Increased IOP can damage the retina and optic nerve, possibly leading to vision loss.
- Damage is partly due to the degeneration of ganglion cells in the retina.
- Loss of nerve fibers alters the shape of the optic disc, increasing the cup-to-disc ratio (CDR), which is an early sign of glaucoma.
- Visual loss results from damage to retinal ganglionic cells.
- Alterations in the visual field scope are essential for diagnosing glaucoma.
Glaucoma Statistics
- Glaucoma is the second leading cause of blindness worldwide.
- About 80 million individuals globally were affected by glaucoma in 2020.
- Estimates suggest that this figure could reach 111.8 million by 2040.
- Open-angle glaucoma is the most common type, affecting around 57.5 million people globally.
- Regular checkups by ophthalmologists aged 50 and above can decrease the risk of glaucoma development.
Glaucoma Diagnosis Methods
- Multiple manual methods used to diagnose glaucoma include gonioscopy, pachymetry, tonometry, and perimetry.
- Tonometry measures IOP.
- Gonioscopy measures the angle between the iris and cornea.
- Pachymetry measures corneal thickness.
- Manual assessment methods are time-consuming and subjective.
- Availability of ophthalmologists is a limiting factor in remote areas.
- Automated tools are needed that can efficiently diagnose glaucoma early.
Advancements in AI for Glaucoma Detection
- Artificial intelligence technologies have grown significantly.
- AI technology is being integrated into healthcare for practical medical treatments.
- Computer-aided diagnostic (CAD) tools automatically detect glaucoma in clinical practice.
- Machine and deep learning algorithms have increased the diagnostic accuracy of automated tools for detecting glaucoma.
Proposed Deep Learning System
- Proposes an efficient, automated system based on deep learning architecture for early-stage glaucoma diagnosis using given datasets.
- Reviews recent machine learning and deep learning-based glaucoma detection research focusing on features for efficient diagnosis.
- Employs advanced deep learning methods and transfer learning, tuning the model to reduce overfitting likelihood.
- Adopts multiple glaucomatous retinal image datasets to train/test the model to achieve higher diagnostic accuracy.
- Develops an end-to-end learning system that overcomes current glaucoma screening methods' drawbacks.
Literature Review Summary
- Researchers have developed machine learning-based methods and deep learning models like CNNs for glaucoma detection.
- CNNs perform computation effectively and give robust results for disease classification using different layers like convolutional, activation, pooling, and FCL.
- Deep learning and machine learning can perform diagnosis and detection of other retinal diseases (papilledema, diabetic retinopathy, CSR, and hypertensive retinopathy) through OCT and fundus images.
- CAD systems have widened the diagnostic horizon in other diseases like CSR, lung tumor, brain tumor, skin tumor, and prostate cancer.
- Fundus images provide a clear picture of the eye's internal structure, which is used for glaucoma diagnosis through deep learning models.
Related Glaucoma Detection Models
- Serte and Serener developed a glaucoma detection model using a local dataset of 1542 fundus images and an ensemble approach with three CNN architectures (ResNet-50, ResNet-152, and AlexNet). The ensemble approach achieved an AUC of 94% and accuracy of 88%.
- Chaudhary and Pachori developed a glaucoma detection model using RIM-ONE, ORIGA, and DRISHTI-GS datasets, which consist of a ML model and an CNN architecture (ResNet) ensemble approach.
- GlaucomaNet was proposed to identify POAG based on images from different populations and used two CNNs intended to mimic the human grading process.
- Thakoor et al. created a model based on CNN architectures trained on OCT images and pre-trained models to detect glaucoma with a high accuracy, and Hemelings et al. used pre-trained ResNet-128 architecture.
- Yu et al. developed a model using a modified version of U-Net architecture in fundal images achieving good performance.
- Phan et al. developed a model based on three CNN architectures and achieved an AUC of 90% for detecting glaucoma.
- Liao et al. proposed a CNN-based scheme using ResBlock architecture and the model named EAMNet.
- Researchers developed the G-Net model and used two neural networks (U-Net) to separate the disc and cup in DRISHTI-GS dataset, achieving a high accuracy.
- Researchers created a CNN-based model for glaucoma detection using 110 OCT images.
- Lima et al. created a CNN model for the optic cup segmentation for the detection of glaucoma.
- Saxena et al. developed a six-layer CNN model for glaucoma detection.
- Carvalho et al. proposed a 3DCNN algorithm for diagnosing glaucoma through fundus images.
Proposed Methodology
- A model is developed using ResNet-50, a reliable image classification architecture.
- Fundus imaging modality is employed due to its precision in depicting the eye's internal structure.
- Numerous applications of fundus images, including diagnoses of cataracts, retinopathy of prematurity, DR, and age-related macular degeneration (AMD).
Datasets Used
- G1020: High-resolution fundus images focused on the fundus region.
- DRISHTI-GS: OD and OC segmented and ground truth images focused on the OD with manual annotation.
- RIM-ONE: ONH segmented high-resolution fundus images with images captured by fundus camera.
- ORIGA: Segmented and annotated images labeled with grading information used for PPA detection and disc boundary.
Image Preprocessing
- Image preprocessing is performed to enhance image quality for analysis.
- Grayscale images are derived from all training images from the G1020, DRISHTI-GS, ORIGA, and RIM-ONE datasets.
- In grayscale the grayscale morphology synthesizes all pixels with a uniform intensity value.
- Conversion of training images into gray channels.
- OD-centered images in grayscale are applied to the ResNet-50 model for training.
Data Augmentation Techniques
- Data augmentation increases the number of images for statistical and biological significance.
- It is a better approach because of the limited availability of images in the medical field.
- The technique slightly modifies existing data to create more copies.
- Data augmentation also overcomes model overfitting by enhancing performance and diagnostic capability.
Transfer Learning
- Deep learning model's training requires a large image dataset, efficient hardware and more training time..
- Transfer learning uses the pre-trained model, trained on a large number of images such as ImageNet.
- Knowledge is transferred from the model to another, even if the field differs.
- The pre-trained CNN architecture ResNet-50 is retrained on the G1020, ORIGA, RIM-ONE, and DRISHTI-GS datasets.
Convolutional Neural Network
- A multilayer DL network obtaining input as high-dimension data (images) and extracts high-dimension features from input images.
- CNN architectures consist of different numbers of layers that increase as the size of the input images increases.
- Deeper networks learn more accurately, but the increase in computation time is the major drawback.
- CNNs show promising results in image processing, object detection, image segmentation, image classification, video processing, and natural language processing.
ResNet-50 Architecture
- ResNet is the short form of the residual network, and it solves the vanishing gradient problem by using the skip connection approach
- The skip connection technique in the ResNet architecture shows higher detection accuracy, takes less training time, and is easier to optimize.
Experiment Results
- The proposed model is evaluated using performance metrics: accuracy, sensitivity, and specificity.
- The four possibilities for the classified images: true positive, true negative, false positive, and false negative.
- Accuracy is the measure of the correctly labeled images divided by the total number of images.
- Sensitivity represents the correctly classified images affected by glaucoma.
- Specificity represents correctly classified healthy images.
Dataset Division and Training Details
- The dataset's fundus images were divided into three subcategories: training, validation, and testing (80%, 10%, 10%).
- Images were resized to be the same size and centered.
- The model was trained using the SDG solver with a learning rate of 0.001 on ten epochs in Python with a specified system configuration
- Four datasets were used: G1020, RIM-ONE, ORIGA, and DRISHTI-GS.
- The ResNet-50 achieved robust results with 98.48% accuracy, 96.52% specificity, 99.30% sensitivity, 97% AUC, and an F1-score of 98% on G1020 dataset.
Discussion
- The study used the deep learning architecture ResNet-50 to identify early-stage glaucoma using fundus images.
- Datasets G1020, DRISHTI-GS, RIM-ONE, and ORIGA were used for the proposed model's training, validation, and testing.
- The capability of deep learning models can automatically identify patterns from images to obtain robust results for disease detection.
- Training a model with a greater number of layers requires more time, which is not a drawback in clinical settings, as the model best classifies the images in a short amount of time.
- The use of existing models makes it possible to develop a reliable diagnosis system, despite the limited availability of the required data.
Model Performance
- The proposed model exhibited glaucoma detection on the G1020 dataset with 98.48% accuracy, 99.30% sensitivity, 96.52% specificity, an AUC of 97%, and an F1-score of 98%.
- The dataset's restricted pictures induce model overfitting, but the data augmentation technique overcomes this challenge.
- The model's performance is best on the G1020 dataset because it has a large amount of high-resolution images, but less performant on the ORIGA dataset.
Conclusions
- Glaucoma is potentially blinding and several methods have been developed for diagnosis
- The current model uses four different datasets and shows efficacy for diagnosing glaucoma at an early stage using the gray channel of fundus images.
- Self-interpretation of CNN architectures may aid clinicians in timely diagnosis and treatment of glaucoma.
- New models based on both the fundus and OCT images can be developed using a multimodal imaging approach in the future
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