Nucleotides and Purine Synthesis

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Questions and Answers

Which nitrogenous bases are classified as purines?

  • Adenine and Thymine
  • Thymine and Cytosine
  • Cytosine and Uracil
  • Adenine and Guanine (correct)

Which of the following correctly describes the structure of pyrimidines?

  • Single six-membered ring (correct)
  • Single five-membered ring
  • Two-ring structure
  • Complex multi-ring structure

In DNA, which base does Adenine pair with?

  • Uracil
  • Thymine (correct)
  • Cytosine
  • Guanine

What roles do purines and pyrimidines play in cellular processes?

<p>Encoding genetic information (D)</p> Signup and view all the answers

Which pathway is involved in the synthesis of nucleotides?

<p>De novo synthesis and salvage pathways (C)</p> Signup and view all the answers

Which pair of bases is correctly matched with its complement in RNA?

<p>Adenine pairs with Uracil (C)</p> Signup and view all the answers

What is the significance of purine and pyrimidine metabolism in cells?

<p>DNA replication and cell division (C)</p> Signup and view all the answers

Which nitrogenous base is found only in RNA?

<p>Uracil (C)</p> Signup and view all the answers

What is required as a cofactor for the synthesis of Thymidine Monophosphate (TMP) from dUMP?

<p>Tetrahydrofolate (C)</p> Signup and view all the answers

Which enzyme is primarily involved in the degradation of Uracil?

<p>Dihydropyrimidine dehydrogenase (D)</p> Signup and view all the answers

What is the end product of β-alanine metabolism?

<p>Malonyl-CoA (A)</p> Signup and view all the answers

Which condition is characterized by hyperuricemia due to excessive purine degradation?

<p>Lesch-Nyhan Syndrome (D)</p> Signup and view all the answers

What is the effect of Methotrexate on cellular processes?

<p>It inhibits purine and pyrimidine synthesis. (A)</p> Signup and view all the answers

Which of the following symptoms is NOT associated with Gout?

<p>Megaloblastic anemia (B)</p> Signup and view all the answers

Accumulation of orotic acid is primarily linked to which disorder?

<p>Orotic Aciduria (B)</p> Signup and view all the answers

Which molecule is primarily synthesized from dUMP?

<p>Thymidine Monophosphate (A)</p> Signup and view all the answers

What is the starting molecule for the de novo synthesis of purines?

<p>Ribose-5-phosphate (B)</p> Signup and view all the answers

Which enzyme catalyzes the conversion of PRPP to 5-phosphoribosylamine?

<p>Glutamine-PRPP amidotransferase (D)</p> Signup and view all the answers

What is the critical branch point in purine synthesis?

<p>IMP (A)</p> Signup and view all the answers

How is AMP synthesized from IMP?

<p>Through an intermediate called adenylosuccinate (C)</p> Signup and view all the answers

What initiates the de novo pyrimidine synthesis process?

<p>Synthesis of carbamoyl phosphate (A)</p> Signup and view all the answers

Which compound is NOT a precursor in the de novo synthesis of purines?

<p>Ornithine (A)</p> Signup and view all the answers

What regulates the purine synthesis pathway?

<p>Feedback inhibition and energy levels (D)</p> Signup and view all the answers

What enzyme is involved in the conversion of xanthine to uric acid?

<p>Xanthine oxidase (A)</p> Signup and view all the answers

Which enzyme is responsible for converting UMP to CTP?

<p>CTP synthetase (C)</p> Signup and view all the answers

What is the significance of inosine in purine metabolism?

<p>It acts as a precursor for both AMP and GMP (A)</p> Signup and view all the answers

Which product forms from the hydrolysis of AMP?

<p>Adenosine (D)</p> Signup and view all the answers

What are the products of inosine in purine degradation?

<p>Xanthine and uric acid (C)</p> Signup and view all the answers

What is the primary function of purine nucleotide synthesis?

<p>Supply nucleotides for DNA and RNA synthesis (D)</p> Signup and view all the answers

What occurs when there is excessive accumulation of purine nucleotides?

<p>Induction of feedback inhibition (D)</p> Signup and view all the answers

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Flashcards

Nucleotide

A complex molecule found in DNA and RNA consisting of a nitrogenous base (purine or pyrimidine), a pentose sugar (ribose or deoxyribose), and one or more phosphate groups.

Purine

A double-ringed nitrogenous base found in DNA and RNA, including Adenine (A) and Guanine (G).

Pyrimidine

A single-ringed nitrogenous base found in DNA and RNA, including Cytosine (C), Thymine (T), and Uracil (U).

De Novo Purine Synthesis

The process by which purines are synthesized from scratch using simpler molecules.

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Purine Degradation

The process by which purines are broken down into their basic components.

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De Novo Pyrimidine Synthesis

The process by which pyrimidines are synthesized from scratch using simpler molecules.

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Pyrimidine Degradation

The process by which pyrimidines are broken down into their basic components.

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Salvage Pathway

A pathway that recycles purines and pyrimidines from broken down nucleic acids.

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Thymidylate Synthase

The synthesis of thymidine monophosphate (TMP) from deoxyuridine monophosphate (dUMP). Requires tetrahydrofolate as a cofactor.

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Lesch-Nyhan Syndrome (LNS)

A genetic disorder caused by a deficiency in HGPRT (hypoxanthine-guanine phosphoribosyltransferase), leading to excessive purine degradation and uric acid accumulation. Symptoms include hyperuricemia, self-mutilation, and neurological dysfunction.

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Gout

A disorder characterized by the accumulation of uric acid due to either overproduction or impaired excretion. Urate crystals form in joints, leading to inflammation and pain.

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Orotic Aciduria

A metabolic disorder caused by defects in the enzymes of pyrimidine synthesis. This leads to the accumulation of orotic acid, associated with megaloblastic anemia and growth retardation.

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Methotrexate

An inhibitor of dihydrofolate reductase (DHFR). It affects folate metabolism, limiting purine and pyrimidine synthesis. The mechanism targets rapidly dividing cancer cells.

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Metabolism

The sum of all biochemical reactions in an organism.

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Biochemistry

The study of the chemistry of living organisms.

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Inosine monophosphate (IMP)

A key intermediate in the de novo purine synthesis pathway, serving as a precursor for both AMP and GMP.

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Ribose-5-phosphate

A five-carbon sugar phosphate produced from the pentose phosphate pathway, essential for the synthesis of nucleotides.

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PRPP synthetase

The enzyme that converts ribose-5-phosphate to PRPP, a crucial step in purine and pyrimidine synthesis.

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Phosphoribosyl pyrophosphate (PRPP)

A high-energy compound formed from ribose-5-phosphate, serving as an activated substrate in nucleotide synthesis.

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Glutamine-PRPP amidotransferase

The enzyme that converts PRPP to 5-phosphoribosylamine, a key step in building the purine ring.

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Conversion of PRPP to 5-phosphoribosylamine

A crucial step in purine synthesis where the first nitrogen atom is added to the purine ring.

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Formation of the purine ring

The process of adding various atoms from amino acids, formyl groups, and CO2 to form the purine ring structure.

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Adenylosuccinate synthetase

The enzyme that converts IMP to adenylosuccinate, a key intermediate in AMP synthesis.

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IMP dehydrogenase

The enzyme that converts IMP to GMP, requiring NAD+ for oxidation and GMP synthetase for final conversion.

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Feedback inhibition

A mechanism where the end products of a metabolic pathway inhibit the enzymes involved in their synthesis, preventing excessive accumulation.

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Xanthine oxidase

An enzyme involved in converting xanthine to uric acid, the final product of purine degradation.

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Study Notes

Nucleotide Structure & Classification

  • Nucleotides are crucial for all life, made of a nitrogenous base (purine or pyrimidine), a pentose sugar (ribose or deoxyribose), and one or more phosphate groups.
  • Purines are adenine (A) and guanine (G), with a double-ring structure.
  • Pyrimidines are cytosine (C), thymine (T), and uracil (U), with a single-ring structure. Thymine is only in DNA, uracil is only in RNA.

Purine Synthesis (De Novo)

  • De novo synthesis builds complex molecules from simpler ones, unlike recycling existing ones.
  • Advantages include creating essential molecules, supporting cell processes, and adaptable nutrient utilization in cellular functions.
  • The process starts with ribose-5-phosphate from the pentose phosphate pathway (PPP), converted to phosphoribosyl pyrophosphate (PRPP) by PRPP synthetase.
  • A key step is converting PRPP to 5-phosphoribosylamine, catalyzed by glutamine-PRPP amidotransferase (rate-limiting step).
  • Successive steps add atoms, forming inosine monophosphate (IMP).
  • IMP is a branch point, leading to either adenosine monophosphate (AMP) or guanosine monophosphate (GMP).
  • AMP formation involves adenylosuccinate intermediate, GTP is used during the process.
  • GMP synthesis uses IMP dehydrogenase and GMP synthetase, requiring NAD+.
  • Purine synthesis is regulated by feedback inhibition from AMP and GMP.

Purine Degradation

  • AMP is deaminated to inosine, hydrolyzed to hypoxanthine, and then oxidized to xanthine by xanthine oxidase.
  • GMP is dephosphorylated to guanosine, then converted to guanine; also goes through a xanthine oxidase conversion to xanthine.
  • Xanthine is converted to uric acid by xanthine oxidase. Uric acid is excreted.
  • High uric acid can cause gout.

Pyrimidine Synthesis (De Novo)

  • Pyrimidine synthesis begins with carbamoyl phosphate formed from glutamine and carbon dioxide (using carbamoyl phosphate synthetase II) in the cytosol.
  • Carbamoyl phosphate is transferred to aspartate for dihydroorotate formation.
  • Dihydroorotate is oxidized to orotate.
  • Orotate combines with PRPP to form orotidine monophosphate (OMP).
  • OMP is converted to uridine monophosphate (UMP) by decarboxylation.
  • UMP is phosphorylated to UTP, then converted to CTP (cytidine triphosphate) by CTP synthetase.
  • Thymidine monophosphate (TMP) is made from dUMP (a derivative of UMP) using thymidylate synthase and tetrahydrofolate.

Pyrimidine Degradation

  • Uracil and thymine are broken down to β-alanine and β-aminoisobutyric acid.
  • Products of these degradation processes are eventually excreted.

Clinical Significance

  • Purine disorders: Gout (excessive uric acid), Lesch-Nyhan syndrome (HGPRT deficiency).
  • Pyrimidine disorders: Orotic aciduria (deficient pyrimidine synthesis enzymes).
  • Cancer treatment: Methotrexate inhibits folate metabolism, impacting purine and pyrimidine synthesis, used to slow cancer cell division.

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