Nucleic Acids Overview
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Nucleic Acids Overview

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Questions and Answers

What effect does high temperature have on DNA structure?

High temperature causes melting of DNA by disrupting hydrogen bonds, resulting in two single strands.

How does the presence of G-C base pairs influence the melting point of DNA?

The higher the number of G-C base pairs, the higher the melting point of the DNA.

Define the terms 'template strand' and 'sense strand' in the context of DNA.

The template strand is the codogenic strand (-) that serves as a template for transcription, while the sense strand is the coding strand (+) that has the same sequence as the RNA product.

Differentiate between messenger RNA (mRNA) and transfer RNA (tRNA).

<p>mRNA transfers genetic information from DNA to ribosomes, while tRNA transfers amino acids during protein synthesis.</p> Signup and view all the answers

What is the significance of the A, P, and E sites in the ribosome?

<p>The A site binds to aminoacyl-tRNA, the P site forms a peptide bond between amino acids, and the E site is where tRNA exits the ribosome.</p> Signup and view all the answers

Describe the secondary structure of RNA and give examples of its features.

<p>The secondary structure of RNA includes features such as hairpin loops and complex loops formed by base-stacking interactions.</p> Signup and view all the answers

Explain the role of ribosomal RNA (rRNA) in the ribosome.

<p>rRNA, along with proteins, forms the structural and functional core of ribosomes, essential for protein synthesis.</p> Signup and view all the answers

What is the process of annealing in relation to DNA?

<p>Annealing occurs when temperature or pH returns to normal levels, allowing the two single strands of DNA to reform a double helix.</p> Signup and view all the answers

What type of bond connects the 5’-phosphate group of one nucleotide to the 3’-hydroxyl group of the next nucleotide?

<p>Phosphodiester bond.</p> Signup and view all the answers

List the complementary base pairs in DNA and RNA.

<p>A-T (or A-U in RNA) and G-C.</p> Signup and view all the answers

Identify the primary difference between NAD+ and NADH.

<p>NADH is the reduced form of NAD+, which means it has an additional electron.</p> Signup and view all the answers

According to Chargaff's rules, what is true about the amounts of nucleobases in a double-stranded DNA molecule?

<p>A = T and C = G.</p> Signup and view all the answers

How does the structural composition of DNA differ from that of RNA?

<p>DNA is double-stranded and contains 2’-deoxyribose, while RNA is single-stranded and contains ribose.</p> Signup and view all the answers

What is a dinucleotide and how is it formed?

<p>A dinucleotide is formed by the linkage of two nucleotides through a phosphodiester bond.</p> Signup and view all the answers

Describe the Watson-Crick model of DNA.

<p>The Watson-Crick model proposes that DNA consists of two antiparallel helical strands that twist around a central axis.</p> Signup and view all the answers

What are the primary roles of mRNA, rRNA, and tRNA in protein synthesis?

<p>mRNA carries genetic information, rRNA forms the core of the ribosome structure, and tRNA delivers amino acids during translation.</p> Signup and view all the answers

What is the primary difference between genotype and phenotype?

<p>Genotype refers to the genetic makeup of an organism, while phenotype is the observable traits resulting from the genotype.</p> Signup and view all the answers

Describe the structural differences between DNA and RNA viruses.

<p>DNA viruses have a double helix structure and are usually more stable, while RNA viruses can have single or double-stranded forms and are often more error-prone.</p> Signup and view all the answers

Explain the impact of replication accuracy on DNA and RNA viruses.

<p>DNA viruses replicate accurately, leading to fewer mutations, whereas RNA viruses often have error-prone replication, resulting in higher mutation rates.</p> Signup and view all the answers

What are the major capsid proteins found in adenovirus?

<p>The major capsid proteins in adenovirus include penton and hexon, along with minor capsid proteins.</p> Signup and view all the answers

Identify two families of ssRNA (+) viruses and their significance.

<p>Two families of ssRNA (+) viruses are Caliciviridae and Coronaviridae, important due to their roles in human diseases.</p> Signup and view all the answers

Why are RNA viruses considered to be prone to degradation within cells?

<p>RNA viruses are actively degraded by cellular mechanisms, especially double-stranded RNA (dsRNA) forms, making them more vulnerable.</p> Signup and view all the answers

What does the term 'one gene-one polypeptide' imply in genetics?

<p>'One gene-one polypeptide' implies that each gene encodes a specific polypeptide or RNA, indicating a direct relationship between genes and protein translation.</p> Signup and view all the answers

How do RNA viruses assemble their capsid proteins differently than DNA viruses?

<p>RNA viruses co-assemble with their capsid proteins, while DNA viruses are packaged into preformed capsid shells.</p> Signup and view all the answers

What are the two types of nitrogenous bases found in nucleic acids?

<p>Pyrimidines and purines.</p> Signup and view all the answers

How does tautomerization affect the properties of nucleic acids?

<p>Tautomerization affects structures, electron distribution, and light absorption of nucleic acids.</p> Signup and view all the answers

Differentiate between ribose and deoxyribose.

<p>Ribose contains an -OH group at the 2' carbon, while deoxyribose has only a -H at that position.</p> Signup and view all the answers

What is a nucleoside composed of?

<p>A nucleoside consists of a nitrogenous base and a pentose sugar.</p> Signup and view all the answers

Define a nucleotide and provide an example.

<p>A nucleotide is composed of a nitrogenous base, pentose sugar, and a phosphate group; for example, AMP (adenosine 5'-monophosphate).</p> Signup and view all the answers

What are the conformation types of ribose?

<p>The conformation types of ribose are endo and exo movements at the C-2' and C-3' positions.</p> Signup and view all the answers

List the primary pyrimidine bases found in nucleic acids.

<p>The primary pyrimidine bases are thymine (T), cytosine (C), and uracil (U).</p> Signup and view all the answers

What is the N-β-glycosidic linkage in a nucleoside?

<p>The N-β-glycosidic linkage connects the nitrogenous base to the pentose sugar.</p> Signup and view all the answers

What distinguishes the leading strand from the lagging strand during DNA replication?

<p>The leading strand is synthesized continuously, while the lagging strand is synthesized discontinuously in fragments known as Okazaki fragments.</p> Signup and view all the answers

What role do DNA helicases play in DNA replication?

<p>DNA helicases unwind the double or single-stranded DNA or RNA by breaking hydrogen bonds.</p> Signup and view all the answers

Describe the function of topoisomerase during DNA replication.

<p>Topoisomerase relieves topological stress that can occur ahead of the replication fork as the DNA unwinds.</p> Signup and view all the answers

What is the primary purpose of DNA polymerases in the process of DNA replication?

<p>DNA polymerases polymerize DNA by transferring a phosphoryl group to the growing DNA strand.</p> Signup and view all the answers

Explain the difference between exonucleases and endonucleases in terms of their action on DNA.

<p>Exonucleases remove nucleotides from the ends of DNA, while endonucleases cut DNA at specific internal sites.</p> Signup and view all the answers

What are the characteristics of a forward primer and a reverse primer in DNA replication?

<p>A forward primer complements the template strand and is used in the 5' to 3' direction, while a reverse primer complements the reverse strand.</p> Signup and view all the answers

How does proofreading occur during DNA replication?

<p>Proofreading occurs through the action of nucleases that correct errors by excising mispaired nucleotides.</p> Signup and view all the answers

What is the significance of the active site geometry of DNA polymerases in relation to base pairing?

<p>The active site geometry of DNA polymerases fits the standard base pairs A-T and G-C, ensuring accurate replication.</p> Signup and view all the answers

Study Notes

Learning Objectives

  • Apply bioinformatics tools to understand nucleic acid structure and function.
  • Explore physical and chemical properties of nucleic acids and their practical applications.
  • Investigate the relationship between nucleic acids, amino acids, and proteins.

Nucleic Acid Components

  • Nitrogenous bases include pyrimidines (Thymine, Cytosine, Uracil) and purines (Adenine, Guanine).
  • Pentose sugars are either ribose (in RNA) or deoxyribose (in DNA).
  • Nucleosides consist of a nitrogenous base and pentose sugar.
  • Nucleotides are formed by adding a phosphate group to nucleosides.

Tautomerization & Structure

  • Tautomerization affects the aromatic bases' structures, influencing electron distribution and light absorption.
  • Electron delocalization gives bonds partial double-bond character.

Nucleosides

  • Nucleosides include:
    • Adenosine (A)
    • Deoxyadenosine (dA)
    • Guanosine (G)
    • Deoxyguanosine (dG)
    • Deoxythymidine (dT)
    • Cytidine (C)
    • Deoxycytidine (dC)
    • Uridine (U)

Nucleotides

  • Nucleotides are structured as:
    • Adenylate (AMP)
    • Deoxyadenylate (dAMP)
    • Guanylate (GMP)
    • Deoxyguanylate (dGMP)
    • Deoxythymidylate (dTMP)
    • Cytidylate (CMP)
    • Deoxycytidylate (dCMP)
    • Uridylate (UMP)

Nucleotide Linkages

  • Nucleotides are linked by phosphodiester bonds between the 5'-phosphate group and 3'-hydroxyl group.
  • Important dinucleotides include NAD+ and NADP+, involved in various biochemical processes.

Nucleic Acid Structure

  • DNA and RNA differ in structures:
    • DNA is double-stranded and uses deoxyribose; RNA is single-stranded and uses ribose.
    • DNA utilizes bases A, T, G, C, while RNA replaces Thymine with Uracil (A, U, G, C).

Base Pairing

  • Complementary bases: A-T (or A-U in RNA), G-C.
  • Chargaff’s rules dictate that A=T and C=G, leading to A+G=T+C.

Watson-Crick Model

  • DNA features antiparallel helical strands coiling around a common axis.

High Temperature Effects

  • Elevated temperatures induce DNA denaturation, breaking hydrogen bonds, leading to two single strands.
  • DNA melting temperature (Tm) rises with higher G-C content.

Genetic Information Storage

  • DNA serves as a genetic information repository, with the template strand often referred to as the coding strand.
  • Codons in DNA and RNA play a critical role in protein synthesis.

RNA Types

  • Main RNA types include:
    • Messenger RNA (mRNA): Transfers genetic information from DNA to ribosomes.
    • Ribosomal RNA (rRNA): Combines with proteins to form ribosome subunits.
    • Transfer RNA (tRNA): Conveys genetic information from mRNA to protein during translation.

DNA Replication

  • DNA helicases unwind DNA by disrupting hydrogen bonds.
  • Topoisomerase alleviates topological stress during replication.
  • DNA polymerases synthesize DNA by transferring a phosphoryl group.

Proofreading Mechanisms

  • Nucleases (DNases) ensure replication accuracy through exonucleases and endonucleases.
  • Active site geometry facilitates precise base pairing.

Viruses

  • DNA viruses typically exhibit a B-form double helix; RNA viruses consist of single or double-stranded forms.
  • DNA viruses replicate accurately, while RNA viruses tend to have higher mutation rates.

Examples of Viruses

  • Notable DNA viruses include Poxviridae and Herpesviridae.
  • Notable RNA viruses encompass Orthomyxoviridae and Coronaviridae.

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Description

This quiz explores the structure and functions of nucleic acids, focusing on their physical and chemical properties. You will learn about the relationships between nucleic acids, amino acids, and proteins, as well as applying bioinformatics tools in this field.

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