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Questions and Answers
What are the two primary types of nucleic acids and what distinguishes their structure?
What are the two primary types of nucleic acids and what distinguishes their structure?
The two primary types of nucleic acids are DNA and RNA; DNA contains deoxyribose sugar and is usually double-stranded, while RNA contains ribose sugar and is typically single-stranded.
Describe Chargaff's Rule and its significance in DNA structure.
Describe Chargaff's Rule and its significance in DNA structure.
Chargaff's Rule states that the amounts of adenine (A) and thymine (T) are equal, as are the amounts of guanine (G) and cytosine (C); this is crucial for the complementary base pairing in the double helix structure of DNA.
What roles do the phosphate groups play in nucleic acids?
What roles do the phosphate groups play in nucleic acids?
Phosphate groups provide the acidic properties of nucleic acids and form stable ester bonds that link nucleotides through phosphodiester bonds, establishing the backbone of DNA and RNA.
Differentiate between purines and pyrimidines in the context of DNA structure.
Differentiate between purines and pyrimidines in the context of DNA structure.
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What is the primary structure of DNA and how is it formed?
What is the primary structure of DNA and how is it formed?
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Explain how a nucleoside is formed from a base and sugar, and identify the chemical bond involved.
Explain how a nucleoside is formed from a base and sugar, and identify the chemical bond involved.
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Describe the significance of the 5′ and 3′ ends of a DNA strand.
Describe the significance of the 5′ and 3′ ends of a DNA strand.
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What role do hydrogen bonds play in the stability of DNA, and how many bonds are formed between adenine and thymine?
What role do hydrogen bonds play in the stability of DNA, and how many bonds are formed between adenine and thymine?
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Discuss the concept of base stacking and its importance in nucleic acid stability.
Discuss the concept of base stacking and its importance in nucleic acid stability.
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Define major and minor grooves in DNA and explain their significance.
Define major and minor grooves in DNA and explain their significance.
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Study Notes
Nucleic Acids
- Long-chain polymers made of repeating units called nucleotides
- Two types: DNA & RNA
DNA
- Polymer of deoxyribonucleotides
- Usually double-stranded
- Found in chromosomes, mitochondria, and chloroplasts
- Acts as genetic material in most organisms
- Carries genetic information
DNA Structure
- Primary structure: Linear sequence of nucleotides linked by phosphodiester bonds
- Secondary structure: Double helix, stabilized by hydrogen bonds between bases & base stacking
- Tertiary structure: Supercoiling
Primary DNA Structure
- Deoxyribose: Sugar within each nucleotide
-
Bases: Nitrogen-containing molecules
- Purines: Adenine (A) & Guanine (G)
- Pyrimidines: Thymine (T) & Cytosine (C)
- Thymine (T) unique to DNA, Uracil (U) unique to RNA
- Phosphate Functional Group: Gives DNA its acidic properties
Chargaff's Rule
- Number of Adenine (A) residues equals the number of Thymine (T) residues: [A] = [T]
- Number of Guanine (G) residues equals the number of Cytosine (C) residues: [G] = [C]
- Amount of purine bases equals the amount of pyrimidine bases: [A] + [G] = [T] + [C]
Nucleosides & Nucleotides
- Nucleoside: Base + sugar (e.g., Adenine + Ribose = Adenosine)
- Nucleotide: Base + sugar + phosphate(s) (e.g. Deoxyadenosine Monophosphate (dAMP))
5' and 3' Ends
- 5' end: Phosphate group attached to the 5' carbon of the sugar
- 3' end: Hydroxyl (OH) group attached to the 3' carbon of the sugar
- DNA sequence written 5' end to the left, 3' end to the right
- This is the direction of synthesis.
Secondary Structure of DNA
- Hydrogen bonding:
- Adenine (A) pairs with Thymine (T) (2 hydrogen bonds)
- Guanine (G) pairs with Cytosine (C) (3 hydrogen bonds)
- Base Stacking: Hydrophobic interaction between flat surfaces of adjacent bases, minimizes contact with water
- Involves Van der Waals forces
- Major & Minor Grooves:
- Asymmetrical spacing between the sugar-phosphate backbones create major and minor grooves
- Major groove: Important for DNA-protein interactions (e.g., transcription factors)
Alternative Double-Helical Structures of DNA
-
B-DNA:
- Right-handed helix
- 10.5 bases per turn
- Found in most living organisms
-
A-DNA:
- Right-handed helix
- 11 bases per turn
- Occurs under low water content and high salt concentration
-
Z-DNA:
- Left-handed helix
- 12 base pairs per turn
- Found under high salt conditions, presence of alcohol, and methylated cytosines
Unusual DNA Secondary Structures
- Slipped Structures: Occur in tandem repeats (e.g., 5'-TACGTACGTACGTACG-3')
- Cruciform Structures: Short bubbles of unpaired single-stranded DNA formed by inverted repeats
- Triple Helix DNA: Third DNA strand joins the first two strands, favoured by purine-pyrimidine stretches
Supercoiled DNA
- Circular DNA with no free 5' or 3' ends
- Exists in a twisted, three-dimensional structure
- More energetically favorable than relaxed DNA
- Topoisomerases relax supercoiled DNA
Topoisomerases
- Enzymes that convert one topoisomer of DNA to another
- Type I Topoisomerases: Relax supercoiled DNA by forming a transient single-stranded break
- Type II Topoisomerases: Require ATP energy, form transient double-stranded breaks to pass another DNA helix through
RNA Structure
- Typically single-stranded
- Made of ribonucleotides linked by phosphodiester bonds
- Ribonucleotide structure: Ribose sugar, one of four nitrogenous bases (A U G C), and a phosphate group
- Less stable than DNA
Secondary & Tertiary RNA Structure
- Stem and loop structure: Double-stranded regions with single-stranded loops
- Internal loops: Single-stranded regions within double-stranded regions
- Bulges: Single-stranded regions in a double-stranded stem
- Junctions: Points where multiple stems meet
Types of RNA
-
Messenger RNA (mRNA):
- Carries the genetic code from DNA to ribosomes for protein synthesis
- 5' cap and 3' poly-A tail provide stability
-
Ribosomal RNA (rRNA):
- Major component of ribosomes
- Essential for protein synthesis
-
Transfer RNA (tRNA):
- Smallest type of RNA
- Transfers amino acids to the ribosome during protein synthesis
- Each amino acid has a specific tRNA
Other Types of RNA
-
Small Nuclear RNA (snRNA):
- Involved in splicing pre-mRNA into mature mRNA
-
Regulatory RNAs:
- microRNA (miRNA): Regulate gene expression by breaking down or blocking mRNA translation
- small interfering RNA (siRNA): Similar to miRNA , often produced from viral RNA
- antisense RNA (aRNA): Bind to mRNA and block its translation
-
Transfer-messenger RNA (tmRNA):
- Found in bacteria and plastids
- Tags proteins lacking stop codons for degradation, preventing ribosome stalling
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Description
Explore the fascinating world of nucleic acids, focusing specifically on DNA's structure and function. Learn about the components of DNA, including nucleotides, their arrangements, and the significance of Chargaff's Rule in genetics. This quiz will deepen your understanding of both DNA and RNA.