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Questions and Answers
Which cluster of RNA molecules is not correctly listed?
Which cluster of RNA molecules is not correctly listed?
What does the anticodon on the tRNA molecule do?
What does the anticodon on the tRNA molecule do?
Binds to the mRNA in a complementary fashion
What is the result of transcribing the sequence AATGCGGTC?
What is the result of transcribing the sequence AATGCGGTC?
UUACGCCAG
What hypothesis was supported by the observation made by Crick and co-workers regarding base additions or deletions?
What hypothesis was supported by the observation made by Crick and co-workers regarding base additions or deletions?
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If the following DNA strand was used as a template, what would be the sequence of the RNA? 5' GTACCGTC 3'
If the following DNA strand was used as a template, what would be the sequence of the RNA? 5' GTACCGTC 3'
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What is the initiator triplet in both prokaryotes and eukaryotes, and what amino acid is recruited by this triplet?
What is the initiator triplet in both prokaryotes and eukaryotes, and what amino acid is recruited by this triplet?
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In prokaryotes, translation of an mRNA is coupled to what process?
In prokaryotes, translation of an mRNA is coupled to what process?
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Which terms accurately reflect the nature of DNA replication in prokaryotes?
Which terms accurately reflect the nature of DNA replication in prokaryotes?
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What is unusual about the amino acid composition of histones?
What is unusual about the amino acid composition of histones?
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If a DNA molecule of 50 base pairs contains 15 cytosine bases (C), how many thymine bases will it have?
If a DNA molecule of 50 base pairs contains 15 cytosine bases (C), how many thymine bases will it have?
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If a DNA molecule is 30% cytosine (C), what is the percentage of guanine (G)?
If a DNA molecule is 30% cytosine (C), what is the percentage of guanine (G)?
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How can replication of DNA in vivo be accurately described?
How can replication of DNA in vivo be accurately described?
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What does enhanced post-translational modification of a protein include?
What does enhanced post-translational modification of a protein include?
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What would Hershey and Chase have concluded if phage ghosts contained 32P label but were absent from infected E. coli?
What would Hershey and Chase have concluded if phage ghosts contained 32P label but were absent from infected E. coli?
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What chemical group is found at the 5' end of a DNA molecule?
What chemical group is found at the 5' end of a DNA molecule?
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What three possible models were suggested to describe the nature of DNA replication?
What three possible models were suggested to describe the nature of DNA replication?
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Which of the following statements are true about enhancers?
Which of the following statements are true about enhancers?
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True or False: Enhancers are recognized by and bind directly to RNA polymerase.
True or False: Enhancers are recognized by and bind directly to RNA polymerase.
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When examining the genetic code, it is apparent that...
When examining the genetic code, it is apparent that...
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True or False: The genetic code is ambiguous in that the same codon can code for two or more amino acids.
True or False: The genetic code is ambiguous in that the same codon can code for two or more amino acids.
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What is the role of tRNA?
What is the role of tRNA?
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The one-gene, one-enzyme hypothesis emerged from work on which two organisms?
The one-gene, one-enzyme hypothesis emerged from work on which two organisms?
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Hairpins are formed in DNA as a result of what?
Hairpins are formed in DNA as a result of what?
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If one compares the base sequences of related genes from different species, what is usually conserved?
If one compares the base sequences of related genes from different species, what is usually conserved?
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What are amino acids?
What are amino acids?
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What secondary structures are formed when single-stranded DNA or RNA is inverted and complementary?
What secondary structures are formed when single-stranded DNA or RNA is inverted and complementary?
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Which of the following are among the major components of prokaryotic ribosomes?
Which of the following are among the major components of prokaryotic ribosomes?
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Match the term with the best letter choice: DNA primase
Match the term with the best letter choice: DNA primase
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Where are amino acids with hydrophobic side chains most likely to be located within a protein?
Where are amino acids with hydrophobic side chains most likely to be located within a protein?
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List 3 requirements of any substance that is considered genetic material.
List 3 requirements of any substance that is considered genetic material.
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Of the following three types of nucleic acids—DNA, mRNA, tRNA— which is most likely to contain modified bases?
Of the following three types of nucleic acids—DNA, mRNA, tRNA— which is most likely to contain modified bases?
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What form of DNA replication was eliminated during the Meselson-Stahl experiment?
What form of DNA replication was eliminated during the Meselson-Stahl experiment?
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A procedure that is often used to separate molecules by using their molecular charges is called ________
A procedure that is often used to separate molecules by using their molecular charges is called ________
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What are the three classes of 'functional' RNAs (not including mRNA)?
What are the three classes of 'functional' RNAs (not including mRNA)?
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Briefly define transformation.
Briefly define transformation.
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What are the four nucleotides that make up RNA? Give full names, not abbreviations.
What are the four nucleotides that make up RNA? Give full names, not abbreviations.
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Name an observation that supports the view that the genetic code may be ordered.
Name an observation that supports the view that the genetic code may be ordered.
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What are the two major types of 'upstream' signals involved in the initiation of transcription by RNA polymerase II?
What are the two major types of 'upstream' signals involved in the initiation of transcription by RNA polymerase II?
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What is meant by the term antiparallel?
What is meant by the term antiparallel?
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What is the enzyme that lays down the initial nucleotides to set up a condition for replication?
What is the enzyme that lays down the initial nucleotides to set up a condition for replication?
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Which of the following relations will be found in the percentages of bases of a double-stranded DNA molecule? A + G = T + C
Which of the following relations will be found in the percentages of bases of a double-stranded DNA molecule? A + G = T + C
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Which of the following relations will be found in the percentages of bases of a double-stranded DNA molecule? A + C = G + T
Which of the following relations will be found in the percentages of bases of a double-stranded DNA molecule? A + C = G + T
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Which of the following relations will be found in the percentages of bases of a double-stranded DNA molecule? A + T / A + G = 1.
Which of the following relations will be found in the percentages of bases of a double-stranded DNA molecule? A + T / A + G = 1.
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What is exon shuffling?
What is exon shuffling?
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Briefly define the term 'autoradiography'. Identify a classic experiment that used autoradiography to determine the replicative nature of DNA in eukaryotes.
Briefly define the term 'autoradiography'. Identify a classic experiment that used autoradiography to determine the replicative nature of DNA in eukaryotes.
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What are the 3 nucleotides that make up RNA?
What are the 3 nucleotides that make up RNA?
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Describe hydrophobic interactions, hydrogen bonds, and disulfide bridges as they relate to protein structure.
Describe hydrophobic interactions, hydrogen bonds, and disulfide bridges as they relate to protein structure.
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Describe the role of the various types of nucleic acids in the storage and expression of information in living organisms.
Describe the role of the various types of nucleic acids in the storage and expression of information in living organisms.
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Uridine contains ______ as sugar.
Uridine contains ______ as sugar.
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Describe the function of N-formylmethionine in prokaryotes.
Describe the function of N-formylmethionine in prokaryotes.
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Which of the following DNA double helices would be more difficult to separate into single-stranded molecules by treatment with heat?
Which of the following DNA double helices would be more difficult to separate into single-stranded molecules by treatment with heat?
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When this molecule is synthesized, what templates are used?
When this molecule is synthesized, what templates are used?
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What form of DNA replication was eliminated during the Meselson-Stahl experiment?
What form of DNA replication was eliminated during the Meselson-Stahl experiment?
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List two types of small RNA molecules involved in gene regulation.
List two types of small RNA molecules involved in gene regulation.
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This method of replication preserves the covalent links on one strand of DNA but allows permanent separation of the 'parental' double helix to form two templates.
This method of replication preserves the covalent links on one strand of DNA but allows permanent separation of the 'parental' double helix to form two templates.
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Suppose that in the use of polynucleotide phosphorylase A and C are present in a ratio of 1A:5C. What is the probability that an AAA sequence will occur?
Suppose that in the use of polynucleotide phosphorylase A and C are present in a ratio of 1A:5C. What is the probability that an AAA sequence will occur?
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The code is nonoverlapping, meaning that, assuming 'standard translation' a given base participates in the specification of _________ amino acid(s).
The code is nonoverlapping, meaning that, assuming 'standard translation' a given base participates in the specification of _________ amino acid(s).
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This new strand of DNA has its 3' end oriented in the same direction as the replication fork travels.
This new strand of DNA has its 3' end oriented in the same direction as the replication fork travels.
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What enzyme is exploited to produce synthetic mRNAs?
What enzyme is exploited to produce synthetic mRNAs?
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Which of the following enzymes are known to be involved in the replication of DNA in bacteria?
Which of the following enzymes are known to be involved in the replication of DNA in bacteria?
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The β chain of adult hemoglobin is composed of 146 amino acids of a known sequence. In comparing the normal β chain with the β chain in sickle cell hemoglobin, what alteration is one likely to find?
The β chain of adult hemoglobin is composed of 146 amino acids of a known sequence. In comparing the normal β chain with the β chain in sickle cell hemoglobin, what alteration is one likely to find?
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Significant in deciphering the genetic code was the discovery of the enzyme polynucleotide phosphorylase. What was this enzyme used for?
Significant in deciphering the genetic code was the discovery of the enzyme polynucleotide phosphorylase. What was this enzyme used for?
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The basic structure of a nucleotide includes the following components:
The basic structure of a nucleotide includes the following components:
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Which of the following two terms relates most closely to split genes?
Which of the following two terms relates most closely to split genes?
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In eukaryotes, tRNAs are
In eukaryotes, tRNAs are
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A short segment of an mRNA molecule is shown: 5'-AUGGUGCUGAAG. Assume that a mutation in the DNA occurs so that the fourth base of the messenger RNA now reads A rather than G. What sequence of amino acids will the mRNA now code for?
A short segment of an mRNA molecule is shown: 5'-AUGGUGCUGAAG. Assume that a mutation in the DNA occurs so that the fourth base of the messenger RNA now reads A rather than G. What sequence of amino acids will the mRNA now code for?
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Which is not true of amino acids?
Which is not true of amino acids?
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The long-term storage of genetic information in a cell occurs in the:
The long-term storage of genetic information in a cell occurs in the:
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What additive did Meselson and Stahl initially supply to the medium to distinguish 'new' from 'old' DNA?
What additive did Meselson and Stahl initially supply to the medium to distinguish 'new' from 'old' DNA?
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In the classic experiment conducted by Hershey and Chase, why was the pellet radioactive in the centrifuge tube that contained bacteria with viruses?
In the classic experiment conducted by Hershey and Chase, why was the pellet radioactive in the centrifuge tube that contained bacteria with viruses?
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The primary structure of a protein is determined by:
The primary structure of a protein is determined by:
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Select three posttranscriptional modifications often seen in the maturation of mRNA in eukaryotes.
Select three posttranscriptional modifications often seen in the maturation of mRNA in eukaryotes.
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Translation is directly dependent on all of the following associations except _______.
Translation is directly dependent on all of the following associations except _______.
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If a DNA molecule is 30% cytosine (C), what is the percentage of guanine (G)?
If a DNA molecule is 30% cytosine (C), what is the percentage of guanine (G)?
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What is the chromosomal configuration of phiX174 virus?
What is the chromosomal configuration of phiX174 virus?
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Why do introns not interrupt the coding of a particular protein?
Why do introns not interrupt the coding of a particular protein?
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In the analysis of the nucleotide composition of double-stranded DNA, which of the following would be true?
In the analysis of the nucleotide composition of double-stranded DNA, which of the following would be true?
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The 'RNA World' theory suggests that:
The 'RNA World' theory suggests that:
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Match the following events in the pre-RNA processing of a one intron-two exon gene in correct sequence order:
Match the following events in the pre-RNA processing of a one intron-two exon gene in correct sequence order:
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Why did fragment B remain double-stranded at 89°C compared to fragment A?
Why did fragment B remain double-stranded at 89°C compared to fragment A?
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Match eukaryotic RNA polymerases with what they transcribe:
Match eukaryotic RNA polymerases with what they transcribe:
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Which of the following are roles of the 5' cap? Select all that are true.
Which of the following are roles of the 5' cap? Select all that are true.
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Electrophoretic separation of HbA from HbS is based on a difference in their:
Electrophoretic separation of HbA from HbS is based on a difference in their:
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_____________ is seen primarily among prokaryotes where one mRNA carries coding information for more than one protein.
_____________ is seen primarily among prokaryotes where one mRNA carries coding information for more than one protein.
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During the polymerization of nucleic acids, covalent bonds are formed between neighboring nucleotides. Which carbons are involved in such bonds?
During the polymerization of nucleic acids, covalent bonds are formed between neighboring nucleotides. Which carbons are involved in such bonds?
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In transcription, nucleotides are always added to the _____ end of the elongating strand.
In transcription, nucleotides are always added to the _____ end of the elongating strand.
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Of what importance might antisense oligonucleotides have in human health?
Of what importance might antisense oligonucleotides have in human health?
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RNA differs from DNA in that it:
RNA differs from DNA in that it:
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List the components of a nucleosome.
List the components of a nucleosome.
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RNA polymerase must bind to a region of DNA called a(n)_______ in order to begin transcription.
RNA polymerase must bind to a region of DNA called a(n)_______ in order to begin transcription.
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The spliceosome is a large enzyme that catalyzes the removal of:
The spliceosome is a large enzyme that catalyzes the removal of:
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In eukaryotes, tRNAs are:
In eukaryotes, tRNAs are:
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In trying to determine whether DNA or protein is the genetic material, Hershey and Chase made use of which fact?
In trying to determine whether DNA or protein is the genetic material, Hershey and Chase made use of which fact?
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Which of these sequences, if paired with its complementary strand, would be a palindrome?
Which of these sequences, if paired with its complementary strand, would be a palindrome?
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Which of the following clusters of terms accurately describes DNA as it is generally viewed in prokaryotes and eukaryotes?
Which of the following clusters of terms accurately describes DNA as it is generally viewed in prokaryotes and eukaryotes?
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What chemical group is found at the 3' end of a DNA molecule?
What chemical group is found at the 3' end of a DNA molecule?
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Select three posttranscriptional modifications often seen in the maturation of mRNA in eukaryotes.
Select three posttranscriptional modifications often seen in the maturation of mRNA in eukaryotes.
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In each round of the elongation cycle of protein synthesis, a new _______ binds to the codon in the _______ site.
In each round of the elongation cycle of protein synthesis, a new _______ binds to the codon in the _______ site.
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In each round of the elongation cycle of protein synthesis, the peptide is transferred from the tRNA in the _______ site to the new aminoacyl-tRNA.
In each round of the elongation cycle of protein synthesis, the peptide is transferred from the tRNA in the _______ site to the new aminoacyl-tRNA.
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Finally, the entire _______ moves along the mRNA in a 5' to 3' direction.
Finally, the entire _______ moves along the mRNA in a 5' to 3' direction.
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In one strand of DNA, the nucleotide sequence is 5'-ATGC-3'. The complementary sequence in the other strand must be:
In one strand of DNA, the nucleotide sequence is 5'-ATGC-3'. The complementary sequence in the other strand must be:
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Which of the following are among the major components of prokaryotic ribosomes?
Which of the following are among the major components of prokaryotic ribosomes?
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Study Notes
Exon Shuffling
- Exon shuffling refers to the recombination of exons from ancestral genes, leading to functional gene diversity in eukaryotes.
- This process is enhanced by the presence of introns during genetic crossing over.
Autoradiography
- Autoradiography is a technique for detecting isotopes within cells.
- Key experiment by Taylor, Woods, and Hughes used 3-H Thymidine to confirm DNA's replicative nature.
RNA Nucleotides
- RNA consists of four nucleotides: Adenine, Guanine, Cytosine, and Uracil.
Protein Structure Phenomena
- Hydrophobic interactions: Nonpolar amino acids cluster away from water, influencing protein shape.
- Hydrogen bonds: Form between side chains or peptide bonds, stabilizing helical and pleated structures.
- Disulfide bridges: Formed between cysteine residues, providing strong links across protein regions.
Nucleic Acids and Information Storage
- DNA's base sequences are transcribed into RNAs, which play roles in protein synthesis.
- tRNA carries amino acids, while mRNA and rRNA help sequence amino acids into proteins.
Uridine Sugar Component
- Uridine contains ribose as its sugar component.
Prokaryotic Translation Initiator
- N-formylmethionine is the initiating amino acid in prokaryotic translation.
DNA Helix Stability
- DNA molecule B is more stable due to higher G-C content compared to A, making it harder to separate under heat.
RNA Synthesis Template
- Only DNA acts as a template for RNA synthesis, not the reverse.
Meselson-Stahl Experiment
- Conservative replication was disproved as the original double-helix was not preserved during division.
Small RNA in Gene Regulation
- siRNA and mRNA are involved in regulating gene expression.
DNA Replication Method
- Semiconservative replication allows one strand to preserve its covalent links while forming two templates.
Polynucleotide Phosphorylase
- This enzyme synthesizes synthetic RNA molecules.
Bacterial DNA Replication Enzymes
- Key enzymes in bacterial DNA replication include Ligase, RNA primase, and DNA Polymerase I.
Sickle Cell Hemoglobin Mutation
- Alteration of the β chain results in valine replacing glutamic acid at the 6th position.
Polynucleotide Phosphorylase in RNA Synthesis
- Used for creating synthetic RNA in lab environments.
Nucleotide Structure
- A nucleotide consists of a base, sugar, and phosphate group.
Split Genes
- Introns and exons are terms closely related to split genes in genetic encoding.
tRNA Function
- In eukaryotes, tRNAs are transcribed in the nucleus before functioning in the cytoplasm.
mRNA Mutation Effects
- A mutation in mRNA could lead to changes in amino acid coding, e.g., a single base change affects protein sequence.
Amino Acid Truths
- The statement "all amino acids are building blocks of proteins" is true; there are 20 essential amino acids for the body.
Long-term Genetic Storage
- Genetic information is stably stored in DNA within cells.
Distinguishing DNA in E. Coli
- In the Meselson-Stahl experiment, 15-N was utilized to differentiate old from new DNA strands.
Hershey-Chase Experiment Outcomes
- The pellet in the centrifuge contained bacteria, which incorporated radioactive viral DNA proving DNA as the genetic material.
Primary Protein Structure
- The sequence of amino acids determines a protein's primary structure.
mRNA Maturation Process
- Maturation of mRNA includes 5' capping, poly-A tail addition, and splicing.
Translation Requirements
- Translation depends on the binding of ribosomal subunits and tRNA, while DNA does not directly participate.
Nucleotide Composition
- If DNA has 30% cytosine, it will equally have 30% guanine due to complementary base pairing.
phiX174 Virus Structure
- The phiX174 virus is characterized by single-stranded circular DNA.
Role of Introns
- Introns contain termination codons but are removed before mRNA translation takes place.
Nucleotide Equivalence
- In double-stranded DNA, A + C equals G + T due to base pairing rules.
RNA World Hypothesis
- Proposes that early life forms used RNA as genetic material before DNA.
Pre-mRNA Processing Sequence
- The sequence begins with transcription, followed by capping, recognition of AAUAAA by proteins, splicing, and export to the cytoplasm.
DNA Fragment Stability
- Increased GC content in DNA fragments leads to higher stability against denaturation.
RNA Polymerase Functions
- RNA Pol I synthesizes rRNA, RNA Pol II synthesizes mRNA and snRNA, and RNA Pol III synthesizes tRNA and rRNA.
Functions of the 5' Cap
- The 5' cap facilitates ribosomal binding, protects RNA from degradation, and assists in intron removal.
Electrophoresis and Hemoglobin
- Differences in charge allow separation of HbA from HbS in electrophoresis.
Polycistronic mRNA in Prokaryotes
- Polycistronic mRNA carries coding information for multiple proteins.
Nucleotide Bonding
- Covalent bonds form between 3' and 5' carbons of nucleotides during nucleic acid synthesis.
Antisense Oligonucleotides in Gene Therapy
- Used to bind mRNA and inhibit gene expression related to genetic disorders.
RNA Characteristics
- RNA has uracil instead of thymine, contains ribose sugar, is usually single-stranded, and is synthesized in the nucleus.
Nucleosome Composition
- A nucleosome consists of DNA wrapped around histone proteins: H2A, H2B, H3, and H4.
Promoter Role in Transcription
- RNA polymerase binds to a promoter region to initiate transcription.
Spliceosome Function
- The spliceosome catalyzes the removal of introns from pre-mRNA.
tRNA Processing Location
- tRNAs are transcribed in the nucleus but function in the cytoplasm.
Hershey-Chase DNA Evidence
- DNA's phosphorus content was vital to demonstrate it as the genetic material.
Complementary DNA Pairing
- A complementary DNA sequence can be derived from a given nucleotide strand.
Prokaryotic Ribosome Composition
- Prokaryotic ribosomes consist of 16S, 5S, and 23S rRNA.
Anticodon Functionality
- The tRNA anticodon pairs complementarily with mRNA during translation.
Result of Transcription
- Transcribing a DNA sequence results in a specific RNA output.
Triplet Code Confirmation
- Evidence from base addition or deletion experiments supports the triplet nature of the genetic code.
RNA Transcription Result
- The RNA strand synthesized from a given DNA template follows base pairing rules.
Initiation Codon and Amino Acid
- AUG serves as the initiator codon, recruiting methionine in both prokaryotes and eukaryotes.
Coupling in Prokaryotic Translation
- In prokaryotes, translation occurs simultaneously with transcription.
Prokaryotic DNA Replication Properties
- Prokaryotic DNA replication is characterized by a fixed point of initiation, bidirectionality, and being semiconservative.
Histone Composition and Function
- Histones are rich in positively charged amino acids, aiding in the binding to negatively charged DNA and forming nucleosomes without H1.### DNA and Base Pairing
- A DNA molecule with 50 base pairs containing 15 cytosine (C) bases has 35 thymine (T) bases.
- In a DNA molecule that is 30% cytosine, the percentage of guanine (G) is also 30%.
- DNA replication in vivo is described as semiconservative, meaning each new DNA molecule contains one original strand and one newly synthesized strand.
Protein Modifications and Genetic Material
- Post-translational modifications of proteins can include the removal or alteration of terminal amino acids.
- Hershey and Chase's experiment indicated that if phage ghosts contain a 32P label but lack it within infected E. coli, it suggests that protein serves as the genetic material for phage.
DNA Structure and Gene Regulation
- A phosphate group is found at the 5' end of a DNA molecule.
- DNA replication models include semiconservative, dispersive, and conservative approaches.
- Enhancers are DNA sequences recognized by transcription factors; they act as control elements distant from the promoter and can be located far upstream or downstream of the gene they regulate.
Genetic Code and RNA Function
- The genetic code shows redundancy; multiple codons can encode the same amino acid.
- The genetic code is not ambiguous, ensuring that each codon codes for only one specific amino acid.
- tRNA serves as the transporter of amino acids to the ribosome for protein synthesis.
Experimental Evidence and Gene Conservancy
- Hairpins in DNA arise from inverted and complementary sequences within the same strand.
- The one-gene, one-enzyme hypothesis developed from studies on Neurospora and Drosophila.
- Exons (coding regions) of related genes are generally conserved across species, while introns (non-coding regions) show less conservation.
Ribosomes and RNA Types
- Prokaryotic ribosomes consist of 16S rRNA, 5S rRNA, and 23S rRNA.
- DNA primase synthesizes RNA primers necessary for DNA replication.
- Amino acids build proteins, with tRNA transporting them for synthesis, and over 20 different amino acids are essential for bodily functions.
Functional RNAs and Genetic Material
- Functional RNAs include:
- tRNA: brings amino acids during translation.
- rRNA: integral component of ribosomes.
- snRNA: processes RNA transcripts, particularly in intron removal.
- Transformation refers to the genetic alteration of an organism by exposure to DNA, establishing that DNA is the genetic carrier.
Nucleotide Composition and Patterns
- RNA comprises four nucleotides: adenine, guanine, cytosine, and uracil.
- Observations indicate a pattern in the genetic code, where amino acids with similar chemical properties often share middle bases in codons.
- Antiparallel orientation in DNA refers to the opposite directionality of the two strands, running 5' to 3'.
Miscellaneous Genetic Relationships
- Relationships between DNA base percentages include:
- A + G = T + C (True)
- A + C = G + T (True)
- A + T / A + G = 1.0 (False)
- Electrophoresis (gel electrophoresis) is a method for separating molecules based on their molecular charges.
Studying That Suits You
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Description
Test your understanding of exon shuffling and autoradiography in this self-assessment quiz. The questions explore critical concepts that underpin molecular genetics and the experimental techniques used in the field. Perfect for students studying genetics in eukaryotes.