Podcast
Questions and Answers
What is the primary focus of molecular diagnostics?
What is the primary focus of molecular diagnostics?
- Detecting and measuring genetic material or proteins related to diseases (correct)
- Analyzing demographic data in health care
- Studying cellular structures and functions
- Identifying environmental impacts on health
Which term describes the approach that tailors medical treatment to individual characteristics?
Which term describes the approach that tailors medical treatment to individual characteristics?
- Generalized medicine
- Epidemiological medicine
- Preventive medicine
- Personalized medicine (correct)
What is the role of companion diagnostics in molecular diagnostics?
What is the role of companion diagnostics in molecular diagnostics?
- To monitor long-term health outcomes for all patients
- To provide general health advice
- To enhance the effectiveness of a specific therapy for a patient (correct)
- To diagnose diseases unrelated to genetic material
How can molecular diagnostics aid in family planning?
How can molecular diagnostics aid in family planning?
What recent trend has been observed in the field of molecular diagnostics?
What recent trend has been observed in the field of molecular diagnostics?
Which of the following best describes molecular diagnostics' application in blood banks?
Which of the following best describes molecular diagnostics' application in blood banks?
What is one of the benefits of molecular diagnostics in cancer treatment?
What is one of the benefits of molecular diagnostics in cancer treatment?
Which statement about molecular diagnostics is correct?
Which statement about molecular diagnostics is correct?
What is the proper incubation temperature for lysing cells?
What is the proper incubation temperature for lysing cells?
What is the purpose of adding ethanol to the lysate?
What is the purpose of adding ethanol to the lysate?
What should be done if residual solution is visible in the purification column after the second wash?
What should be done if residual solution is visible in the purification column after the second wash?
How is DNA concentration estimated?
How is DNA concentration estimated?
What is the expected A260/A280 ratio for pure dsDNA?
What is the expected A260/A280 ratio for pure dsDNA?
What is the maximum speed for centrifuging the GeneJET Genomic DNA Purification Column during the second wash?
What is the maximum speed for centrifuging the GeneJET Genomic DNA Purification Column during the second wash?
What should be done with the purification column after eluting the DNA?
What should be done with the purification column after eluting the DNA?
How does reducing the volume of Elution Buffer affect the final quantity of eluted DNA?
How does reducing the volume of Elution Buffer affect the final quantity of eluted DNA?
What is the purpose of adding a concentrated salt solution during DNA extraction?
What is the purpose of adding a concentrated salt solution during DNA extraction?
Which method involves the denaturation of proteins to facilitate the separation of nucleic acids?
Which method involves the denaturation of proteins to facilitate the separation of nucleic acids?
What role does EDTA play in the lysis solution?
What role does EDTA play in the lysis solution?
Why is Proteinase K used during protein removal in DNA extraction?
Why is Proteinase K used during protein removal in DNA extraction?
What is the primary purpose of using ice-cold ethanol or isopropanol in DNA purification?
What is the primary purpose of using ice-cold ethanol or isopropanol in DNA purification?
What is the function of SDS in cell lysis?
What is the function of SDS in cell lysis?
How does minicolumn purification separate nucleic acids from other components?
How does minicolumn purification separate nucleic acids from other components?
Which of the following is NOT typically part of a common lysis solution?
Which of the following is NOT typically part of a common lysis solution?
What is the primary focus of the molecular diagnostic laboratory as outlined in the introduction?
What is the primary focus of the molecular diagnostic laboratory as outlined in the introduction?
Which of the following is critical for ensuring lab safety in molecular biology?
Which of the following is critical for ensuring lab safety in molecular biology?
What is the key purpose of preparing solutions in molecular diagnostics?
What is the key purpose of preparing solutions in molecular diagnostics?
What is the first step in the experimental protocol for genomic DNA preparation from blood?
What is the first step in the experimental protocol for genomic DNA preparation from blood?
Why is the measurement of DNA concentration important in molecular diagnostics?
Why is the measurement of DNA concentration important in molecular diagnostics?
Which of the following components is NOT typically included in the preparation of genomic DNA from blood?
Which of the following components is NOT typically included in the preparation of genomic DNA from blood?
What is the significance of measuring the purity of DNA after extraction?
What is the significance of measuring the purity of DNA after extraction?
In which section of the molecular diagnostic lab notebook would you find the experimental protocol?
In which section of the molecular diagnostic lab notebook would you find the experimental protocol?
What is the primary purpose of the lysis step in silica-based DNA extraction?
What is the primary purpose of the lysis step in silica-based DNA extraction?
Which component is added during the purification-bind step to enhance the binding of DNA to the silica membrane?
Which component is added during the purification-bind step to enhance the binding of DNA to the silica membrane?
What is the result of not removing all ethanol during the elution step?
What is the result of not removing all ethanol during the elution step?
During the wash step, what is the purpose of the two different washes with buffers?
During the wash step, what is the purpose of the two different washes with buffers?
What is the recommended storage condition for blood samples prior to DNA extraction?
What is the recommended storage condition for blood samples prior to DNA extraction?
What role does chaotropic salt play in the lysis step?
What role does chaotropic salt play in the lysis step?
How can the elution of DNA be maximized during the procedure?
How can the elution of DNA be maximized during the procedure?
What is the purpose of including proteinase K in the DNA extraction protocol?
What is the purpose of including proteinase K in the DNA extraction protocol?
What is the purpose of the cell lysis solution in DNA extraction?
What is the purpose of the cell lysis solution in DNA extraction?
Which precaution is crucial to prevent contamination of isolated DNA?
Which precaution is crucial to prevent contamination of isolated DNA?
How can heme contamination in isolated DNA be detected?
How can heme contamination in isolated DNA be detected?
What method can be used to confirm the presence of DNA in a stored sample?
What method can be used to confirm the presence of DNA in a stored sample?
Is it feasible to prove that your DNA is actually in the sample?
Is it feasible to prove that your DNA is actually in the sample?
How is DNA extraction significantly beneficial to forensic scientists?
How is DNA extraction significantly beneficial to forensic scientists?
What role does heme play as a contaminant in DNA isolation from blood?
What role does heme play as a contaminant in DNA isolation from blood?
What is one major challenge faced in isolating DNA from blood samples?
What is one major challenge faced in isolating DNA from blood samples?
What is a typical strategy to increase DNA purity during extraction?
What is a typical strategy to increase DNA purity during extraction?
What is the primary goal during the DNA extraction process?
What is the primary goal during the DNA extraction process?
Which technique is often used to visualize DNA post-extraction?
Which technique is often used to visualize DNA post-extraction?
What can cause DNA degradation during the extraction process?
What can cause DNA degradation during the extraction process?
What consequence arises from improper pipetting during DNA extraction?
What consequence arises from improper pipetting during DNA extraction?
What aspect of DNA does the purity assessment focus on during extraction?
What aspect of DNA does the purity assessment focus on during extraction?
Flashcards
Molecular Biology
Molecular Biology
A branch of biology focused on studying life at the molecular level, particularly the workings of genetic material.
Molecular Diagnostics
Molecular Diagnostics
A type of diagnostic testing that analyzes genetic material or specific proteins related to diseases, allowing for precise and personalized treatment.
Companion Diagnostics
Companion Diagnostics
Molecular tests used to identify if a specific therapy (called the 'companion') is likely to be successful for a particular patient.
Biomarkers
Biomarkers
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Personalized Medicine
Personalized Medicine
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Molecular Pathogen Identification
Molecular Pathogen Identification
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Molecular Diagnostics in Infectious Diseases
Molecular Diagnostics in Infectious Diseases
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Molecular Diagnostics in Blood Banks
Molecular Diagnostics in Blood Banks
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Genomic DNA Extraction from Blood
Genomic DNA Extraction from Blood
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Percent Solution
Percent Solution
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X Solution
X Solution
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Lysis Buffer
Lysis Buffer
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Electrophoresis
Electrophoresis
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Nanodrop Measurement
Nanodrop Measurement
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DNA Concentration
DNA Concentration
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DNA Storage
DNA Storage
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Protein Breakdown
Protein Breakdown
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RNase
RNase
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Salting Out
Salting Out
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Centrifugation
Centrifugation
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DNA Purification
DNA Purification
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Ethanol Precipitation
Ethanol Precipitation
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Phenol-Chloroform Extraction
Phenol-Chloroform Extraction
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Minicolumn Purification
Minicolumn Purification
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Lysis
Lysis
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Chaotropic Salts
Chaotropic Salts
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Purification
Purification
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Spin Column
Spin Column
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Washing (DNA Extraction)
Washing (DNA Extraction)
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Elution
Elution
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Elution Buffer
Elution Buffer
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What is the purpose of the cell lysis solution?
What is the purpose of the cell lysis solution?
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How to remove protein and heme contaminants from DNA?
How to remove protein and heme contaminants from DNA?
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How to detect heme contamination in DNA?
How to detect heme contamination in DNA?
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How to prove DNA is present in a sample?
How to prove DNA is present in a sample?
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Why is DNA extraction important in forensics?
Why is DNA extraction important in forensics?
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Cell Lysis
Cell Lysis
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Microcentrifuge
Microcentrifuge
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A260/A280 Ratio
A260/A280 Ratio
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DNA Dilution
DNA Dilution
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GeneJET Genomic DNA Purification Column
GeneJET Genomic DNA Purification Column
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Study Notes
Molecular Diagnostic Laboratory
- Molecular biology is the study of biology at the molecular level, focusing on genetic material.
- Molecular diagnostics is a dynamic field revolutionizing healthcare by detecting and measuring genetic material or proteins associated with specific diseases.
- This allows for personalized medicine approaches, tailoring care to individual needs.
- Molecular diagnostics discover biomarkers, leading to treatments designed around these markers.
- This aids in accurate disease diagnosis, improving the delivery of therapies to the correct patients.
- Molecular diagnostics are used in hospitals, reference labs, and blood banks.
- They screen donated blood for infectious diseases and diagnose pathogens.
- Increasing demand exists for point-of-care molecular diagnostic technologies.
Introduction
- Molecular diagnostics are crucial in various fields including health, medicine, and forensics.
- PCR-based technology, Fluorescence in situ hybridization (FISH), nanotechnology, biochips, peptide nucleic acid (PNA), and proteomic technology are used in diagnostics.
- Electrochemical detection of DNA also is a molecular approach.
Safety Rules
- Avoid eating, drinking, and smoking in the lab.
- Wear protective gear (gloves, goggles, lab coat) when handling hazardous chemicals.
- Always use fresh tips and pipettes for each solution and sample.
- Maintain a clean work area.
- Properly label all reagents and samples.
- Store chemicals and reagents appropriately (freezer or fridge).
- Do not collect samples if ill.
- Properly dispose of waste.
- Inform instructor on accidental chemical spills or concerns.
- Wash hands thoroughly after lab work.
Preparation of Solutions
- Molar solutions contain a specific number of grams of a solute per liter of solution.
- Percentage solutions involve a specific weight of solute per 100ml of solution (w/v).
- X Solutions are concentrated solutions that need to be diluted for testing.
Genomic DNA Extraction
- Four main steps for extracting DNA from cells include cell lysis, lipids and proteins degradation, DNA purification, and ethanol precipitation.
- Cell lysis: breaking down cell membranes to expose DNA.
- Detergents and surfactants break down cell membranes and nucleus, while protease breaks down proteins.
- Other processes, such as the removal of RNA using RNase are optional.
- Centrifugation separates cellular debris from DNA.
- Ethanol precipitation helps to form a DNA pellet, improving efficiency.
- Common chemicals: Sodium chloride, tris-HCl, EDTA, detergents, proteins, salts, reagents for cell lysis, ethanol, and isopropanol.
Experimental Protocols (Example)
- Samples such as blood are mixed with lysis solutions (example).
- Samples are incubated at 56°C.
- Ethanol is added to the solution, and the mixture is transferred to a column.
- Several wash steps are performed.
- DNA is eluted (released) using a buffer solution.
DNA concentration
- DNA concentration is estimated using absorbance at 260nm, adjusting for turbidity.
- A260/A280 ratio is approximately 1.8 for dsDNA. Ratios below 1.7 suggest protein contamination.
- Turbidity, measured at 320nm, from proteins and organic compounds may affect results.
DNA Storage
- EDTA is a heavy metal chelator, preventing DNA damage.
- Storage temperatures are -70°C or 5°C (for short-term).
- DNA is best stored with high salt (>1M), EDTA (>10mM) and low pH (8.5).
- Ethidium bromide in CsCl is used for long-term storage, but in the dark.
Applications
- Scientific: e.g., gene cloning, DNA analysis in cells and organisms.
- Medicine: diagnosis of diseases, determination of virulence of microorganisms.
- Forensics: identification of individuals in cases such as rape, petty theft, accidents, war victims, and paternity determination.
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