Podcast
Questions and Answers
How many stop codons are present in the genetic code?
How many stop codons are present in the genetic code?
- 1
- 3 (correct)
- 6
- 5
Which amino acid does the start codon AUG code for?
Which amino acid does the start codon AUG code for?
- Methionine (correct)
- Arginine
- Leucine
- Serine
Why is the genetic code described as degenerate?
Why is the genetic code described as degenerate?
- It only contains three stop codons.
- Many amino acids are specified by multiple codons. (correct)
- Some codons do not code for amino acids.
- There are more amino acids than codons.
What is the primary function of tRNA?
What is the primary function of tRNA?
What paradox is associated with tRNA?
What paradox is associated with tRNA?
What is the role of aminoacyl-tRNA synthetases?
What is the role of aminoacyl-tRNA synthetases?
Which of the following statements about the anticodon is true?
Which of the following statements about the anticodon is true?
How many total codons exist in the genetic code?
How many total codons exist in the genetic code?
What does degeneracy in the genetic code refer to?
What does degeneracy in the genetic code refer to?
What is the significance of wobble base pairing in tRNA?
What is the significance of wobble base pairing in tRNA?
Which of the following describes the role of inosine in tRNA?
Which of the following describes the role of inosine in tRNA?
How many different tRNA species are there for certain amino acids due to genetic code degeneracy?
How many different tRNA species are there for certain amino acids due to genetic code degeneracy?
What does the term 'reading frame' refer to in the context of genetic translation?
What does the term 'reading frame' refer to in the context of genetic translation?
What is the term used for a sequence of three nucleotides in mRNA that codes for an amino acid?
What is the term used for a sequence of three nucleotides in mRNA that codes for an amino acid?
How many different amino acids can be coded by a three-nucleotide (triplet) code?
How many different amino acids can be coded by a three-nucleotide (triplet) code?
What mechanism allows for the degeneracy of the genetic code?
What mechanism allows for the degeneracy of the genetic code?
Which amino acid is represented by the codon 'UUU'?
Which amino acid is represented by the codon 'UUU'?
What is the significance of stop codons in the genetic code?
What is the significance of stop codons in the genetic code?
Which of the following scientists is NOT associated with the breaking of the genetic code?
Which of the following scientists is NOT associated with the breaking of the genetic code?
What is the result when the triplet code UUU is repeated in a polynucleotide?
What is the result when the triplet code UUU is repeated in a polynucleotide?
How many codons do not code for any amino acids?
How many codons do not code for any amino acids?
What is the function of tRNA in translation?
What is the function of tRNA in translation?
What is the main outcome of the Nirenberg-Matthaei experiment?
What is the main outcome of the Nirenberg-Matthaei experiment?
What are the three main stages of translation?
What are the three main stages of translation?
What is the primary role of mRNA in the context of protein synthesis?
What is the primary role of mRNA in the context of protein synthesis?
Which statement correctly describes the ribosome's structure?
Which statement correctly describes the ribosome's structure?
What role do cofactors play in the translation process?
What role do cofactors play in the translation process?
What is the significance of the large and small subunits of the ribosome?
What is the significance of the large and small subunits of the ribosome?
What plays a crucial role in identifying the site of initiation of protein synthesis in prokaryotes?
What plays a crucial role in identifying the site of initiation of protein synthesis in prokaryotes?
Which molecule is the formylated version of methionine used in prokaryotic translation initiation?
Which molecule is the formylated version of methionine used in prokaryotic translation initiation?
What is the process called in which amino acids are attached to tRNA?
What is the process called in which amino acids are attached to tRNA?
Which component interacts with the 30S subunit during the initiation of translation in prokaryotes?
Which component interacts with the 30S subunit during the initiation of translation in prokaryotes?
In the amino acid activation process, what is the first product formed when an amino acid reacts with ATP?
In the amino acid activation process, what is the first product formed when an amino acid reacts with ATP?
What completes the initiation complex in translation after the large subunit joins?
What completes the initiation complex in translation after the large subunit joins?
What is the role of active IF2 during translation initiation?
What is the role of active IF2 during translation initiation?
In eukaryotes, what is the equivalent of the Shine-Dalgarno sequence for identifying the initiation site?
In eukaryotes, what is the equivalent of the Shine-Dalgarno sequence for identifying the initiation site?
What is the primary role of IF3 during the initiation of translation?
What is the primary role of IF3 during the initiation of translation?
In what way does EF-Tu function during the elongation phase of translation?
In what way does EF-Tu function during the elongation phase of translation?
What is the significance of the ternary complex during translation?
What is the significance of the ternary complex during translation?
Which factor is responsible for terminating translation when a termination codon appears?
Which factor is responsible for terminating translation when a termination codon appears?
What is the role of GTP in protein synthesis?
What is the role of GTP in protein synthesis?
Which statement about the P site during translation is correct?
Which statement about the P site during translation is correct?
What occurs during ribosome translocation in the elongation stage of translation?
What occurs during ribosome translocation in the elongation stage of translation?
What is unique about tRNA-Met during the initiation of translation?
What is unique about tRNA-Met during the initiation of translation?
Which release factors play a role in the termination of translation?
Which release factors play a role in the termination of translation?
What does the role of IF2 include during the initiation of translation?
What does the role of IF2 include during the initiation of translation?
Flashcards
Degenerate triplet code
Degenerate triplet code
The genetic code is a degenerate triplet code, which means that multiple codons can code for the same amino acid. For example, six different codons can code for the amino acid alanine. This degeneracy is primarily determined and maintained by interactions between amino acids and tRNA.
Wobble base pairing
Wobble base pairing
The ability of the third base of a codon to pair with more than one base in the anticodon of tRNA. This allows for flexibility in codon recognition and contributes to the degeneracy of the genetic code.
Codon
Codon
A specific sequence of three consecutive nucleotides that codes for a particular amino acid. The genetic code is read in sets of three.
tRNA (transfer RNA)
tRNA (transfer RNA)
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Genetic code
Genetic code
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tRNA
tRNA
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Anticodon
Anticodon
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Degeneracy of the genetic code
Degeneracy of the genetic code
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Translation
Translation
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Open Reading Frame (ORF)
Open Reading Frame (ORF)
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Aminoacyl-tRNA synthetases
Aminoacyl-tRNA synthetases
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Wobble hypothesis
Wobble hypothesis
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How the Genetic Code was Broken
How the Genetic Code was Broken
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What is a Codon?
What is a Codon?
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Reading Frames
Reading Frames
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What does tRNA do?
What does tRNA do?
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Synthesis of Aminoacyl tRNA
Synthesis of Aminoacyl tRNA
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Stop Codons
Stop Codons
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The Genetic Code
The Genetic Code
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Ribosome
Ribosome
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Small Ribosomal Subunit
Small Ribosomal Subunit
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Large Ribosomal Subunit
Large Ribosomal Subunit
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Svedberg Unit (S)
Svedberg Unit (S)
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Shine-Dalgarno Sequence (Prokaryotes)
Shine-Dalgarno Sequence (Prokaryotes)
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Kozak Sequence (Eukaryotes)
Kozak Sequence (Eukaryotes)
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Initiator tRNA (tRNAi)
Initiator tRNA (tRNAi)
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Initiation Complex
Initiation Complex
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IF1
IF1
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IF2
IF2
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IF3
IF3
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Ternary Complex
Ternary Complex
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EF-Tu
EF-Tu
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EF-G
EF-G
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A Site
A Site
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P Site
P Site
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Release Factor (RF)
Release Factor (RF)
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Study Notes
Molecular Biology - Module 7, Lecture 1: The Genetic Code
- The lecture focuses on the genetic code, how it works, and how it was discovered.
- Proteins are made of 20 amino acids, but messenger RNA (mRNA) only has 4 nucleotides.
- A sequence of 3 nucleotides (a codon) specifies a particular amino acid.
- There are 64 possible codons (4^3).
- 61 of these codons specify amino acids; the remaining 3 are stop codons.
- The genetic code is degenerate, meaning multiple codons can code for the same amino acid.
- This degeneracy is facilitated by wobble base pairing in transfer RNA (tRNA).
Aims of the Lecture
- Degeneracy of the genetic code.
- How the genetic code was broken (Nirenberg-Matthaei experiment).
- Reading frames.
- The role of tRNA.
- Aminoacyl-tRNA synthesis.
- Wobble, a mechanism for degeneracy.
The Genetic Code
- Proteins are made up of 20 amino acids.
- mRNA only has 4 nucleotides.
- A three-nucleotide sequence (codon) is required to code for each amino acid.
- There are 16 possible combinations of 2 nucleotides.
- There are 64 possible combinations of 3 nucleotides (codons).
- 61 of those 64 codons specify amino acids.
- The remaining three codons signal the end of the protein sequence (stop codons).
The Nirenberg-Matthaei Experiment
- This experiment was crucial in deciphering the genetic code.
- Researchers created synthetic mRNA with only one nucleotide (e.g., UUUUUUU).
- The resulting polypeptide chain contained only one amino acid (e.g., phenylalanine), demonstrating a direct relationship between mRNA sequence and amino acid sequence. This was a critical step in breaking the genetic code.
Reading Frames
- A reading frame is a sequence of codons that runs from a specific start codon to a specific stop codon.
- Almost all protein chains begin with AUG (methionine).
- There are three possible reading frames for any sequence of nucleotides.
- Incorrect reading frame shifts will change the sequence, often leading to non-functional proteins. This is a significant aspect affecting protein function.
Transfer RNA (tRNA)
- tRNA interacts with mRNA codons via an anticodon loop.
- tRNA has an amino acid acceptor arm where the appropriate amino acid is attached ensuring the correct amino acid is added to the chain.
- The anticodon loop of tRNA binds to the mRNA codon, thus facilitating accurate protein synthesis.
- tRNA is essential for linking mRNA codons to their corresponding amino acids during protein synthesis.
Aminoacyl-tRNA Synthetases
- Each tRNA is recognized by a specific aminoacyl-tRNA synthetase.
- These enzymes attach the correct amino acid to its corresponding tRNA. These enzymes ensure accuracy in pairing amino acids and tRNA, essential for correct protein sequence.
- The synthesis process is highly specific to ensure accuracy.
- There are more tRNAs than amino acids since some tRNAs can recognize more than one codon.
Wobble Hypothesis
- Wobble allows unconventional base pairing between the 3rd base of a codon and the 1st base of the anticodon. In other words, irregular base pairing.
- This flexibility helps to accommodate the redundancy of the genetic code. This is how multiple codons can specify the same amino acid; explains why some tRNAs can recognize more than one codon.
Summary
- A degenerate triplet genetic code translates nucleotide sequences into amino acid sequences.
- Specificity in protein synthesis comes from amino acid-tRNA interactions.
- Degeneracy means multiple codons for the same amino acid.
- This redundancy is accomplished via wobble base pairing, a mechanism facilitating more than one tRNA to recognize more than one codon and accounting for the multiple codons for each amino acid.
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