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Questions and Answers
What is the primary function of mitochondria in eukaryotic cells?
What is the role of the intermembrane space in mitochondria?
Which statement best describes cellular respiration?
What is the significance of catabolic pathways in relation to cellular respiration?
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Which of the following structures of mitochondria is responsible for the synthesis of ATP?
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What is the main advantage of aerobic respiration over anaerobic respiration?
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Which process is most directly regulated by cellular respiration?
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How do the structural features of mitochondria contribute to their function?
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Which compound has the highest free energy release according to the provided data?
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Which enzyme classification does NOT belong to oxidoreductases?
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In the context of NAD+ and its functions, what is primarily produced during catabolic reactions?
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Which of the following statements best describes the role of NADPH in metabolism?
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Which high-energy compound has a free energy change closest to -10 kcal/mol?
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What is the primary function of enzymes classified as oxidases?
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Among the listed coenzymes, which one is specifically a phosphorylated form of NADH?
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Which of the following statements about anabolic reactions is correct?
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What substance is produced during pyruvate oxidation besides Acetyl-CoA?
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Which statement best describes the role of oxidative phosphorylation in cellular respiration?
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In biological oxidation, what is primarily converted into usable energy?
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What is the maximum energy yield from complete glucose oxidation, represented as Gibbs free energy?
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Which role do enzymes and co-enzymes play in biological oxidations?
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How is an oxidizing agent defined in a redox reaction?
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Which of the following is NOT a product of the TCA cycle?
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What characterizes a reduction reaction in redox chemistry?
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What part of cellular respiration undergoes electron transport to produce ATP?
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Which of the following statements about biological oxidations is correct?
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What is the primary role of anaplerotic reactions in the TCA cycle?
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Which of the following compounds can serve as a precursor for amino acids in the TCA cycle?
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Which enzyme is primarily responsible for converting pyruvate into oxaloacetate?
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How does the regulation of the TCA cycle occur in response to cellular energy levels?
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Which metabolic waste product is primarily removed through the actions of the TCA cycle?
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In what capacity is the TCA cycle described as an amphibolic pathway?
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Which of the following intermediates is not directly involved in the TCA cycle but serves a crucial biosynthetic role?
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Which step in the TCA cycle is catalyzed by citrate synthase, and what is its significance?
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What is the role of pyruvate dehydrogenase kinase in pyruvate dehydrogenase regulation?
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Which enzyme catalyzes the conversion of citrate to isocitrate?
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Which of the following statements about the TCA cycle is TRUE?
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What is produced during the oxidative decarboxylation of alpha-ketoglutarate?
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In which part of the cell does the TCA cycle predominantly occur?
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Which compound acts as an inhibitor of pyruvate dehydrogenase?
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Which step of the TCA cycle produces FADH2?
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What is the total output of NADH produced from one acetyl-CoA molecule in the TCA cycle?
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Which enzyme is responsible for the production of GTP from succinyl-CoA?
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What type of reaction occurs when malate is converted back into oxaloacetate?
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Identify the main function of the TCA cycle.
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What is the irreversible reaction in the TCA cycle associated with a rate-limiting step?
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Glucose has a caloric value of ______ kcal/mol.
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High-energy compounds are also known as ______ compounds.
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The free energy change for palmitate is ______ kJ/mol.
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ATP has a standard free energy change (△G) of approximately ______ kcal/mol.
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High-energy bonds are found in the majority of ______ compounds.
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The enzyme α-ketoglutarate dehydrogenase is activated by the availability of ______.
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The overall products of the TCA cycle are ______ and ATP.
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Mutations in TCA cycle enzymes may result in various kinds of ______.
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Neurodegenerative diseases like Alzheimer’s Disease are linked to reduced TCA cycle activity leading to energy ______ in neurons.
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Inhibitors of the TCA cycle include ______ and ATP.
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Glycolysis occurs in the ______.
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During pyruvate oxidation, each pyruvate is converted to ______.
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The TCA cycle takes place in the ______.
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In oxidative phosphorylation, electrons from NADH and FADH2 are transferred through the ______.
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The maximum ATP yield from complete glucose oxidation has a Gibbs free energy change of ∆G0' = ______.
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Biological oxidations are essential for generating ______, the energy currency of the cell.
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An oxidizing agent is a substance that ______ an electron in a redox reaction.
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The loss of electrons during a reaction is termed ______.
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In redox chemistry, the substance that donates an electron is called a ______.
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Free energy that is available for useful work is referred to as ______ free energy.
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Pyruvate oxidation links glycolysis to the ______ cycle.
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Pyruvate is produced during ______, the process of breaking down glucose.
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The conversion of pyruvate into Acetyl-CoA occurs in the mitochondrial ______.
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Acetyl-CoA is involved in the tricarboxylic acid (TCA) cycle for ______ production.
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Acetyl-CoA is produced by the breakdown of glucose, fatty acids, and ______ acids.
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In anaerobic conditions, pyruvate can be reduced to ______.
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Excess Acetyl-CoA can be converted into ketone bodies in the ______.
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The TCA cycle produces ______ and FADH₂ for ATP synthesis in the electron transport chain.
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The process of pyruvate oxidation involves an enzyme complex known as ______ dehydrogenase.
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Acetyl-CoA serves as a precursor for the biosynthesis of ______ acids.
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Anaplerotic reactions are important for replenishing ______ intermediates in the TCA cycle.
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Pyruvate acts as a metabolic hub linking carbohydrate metabolism to fat and ______ metabolism.
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The enzyme ______ converts pyruvate and CO2 to oxaloacetate.
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Citrate synthase catalyzes the first step of the ______ cycle.
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The TCA cycle is considered an ______ pathway as it serves both catabolic and anabolic processes.
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Feedback mechanisms in the TCA cycle ensure homeostasis based on cellular ______ levels.
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Acetyl-CoA from fat metabolism enters the TCA cycle, linking ______ and carbohydrate metabolism.
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Removal of carbon waste in the TCA cycle occurs through the production of ______.
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Study Notes
Mitochondria
- Act as the central hub for energy production in eukaryotic cells
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Structure:
- Outer Membrane: Smooth, permeable, contains porins for small molecule and ion transport
- Inner Membrane: Folded into cristae, contains proteins for the electron transport chain and ATP synthesis, impermeable to most ions and molecules
- Intermembrane Space: Between outer and inner membranes, crucial for proton gradient in ATP production
- Mitochondrial Matrix: Enclosed by inner membrane, contains enzymes for the TCA cycle, mtDNA, ribosomes, and metabolic enzymes. Site of key metabolic processes, including the TCA cycle and fatty acid oxidation.
Cellular Respiration
- Process by which cells convert nutrients to energy (ATP) using oxygen
- Occurs primarily in mitochondria of eukaryotic cells
- Provides ATP, the energy currency for cellular activities like muscle contraction, nerve impulse transmission, and biosynthesis
- Integrates metabolic pathways, linking catabolism and anabolism
- Utilizes oxygen efficiently, allowing for high-energy yield compared to anaerobic processes
- Regulates energy balance and metabolic homeostasis in response to dietary intake and energy demands
Key Stages of Cellular Respiration
- Glycolysis: Occurs in cytoplasm, breaks down glucose into two pyruvate molecules
- Pyruvate Oxidation: Occurs in the mitochondrial matrix, converts pyruvate to Acetyl-CoA, producing NADH and releasing CO2
- TCA Cycle (Krebs Cycle): Occurs in the mitochondrial matrix, oxidizes Acetyl-CoA, generating NADH, FADH2, and GTP
- Oxidative Phosphorylation: Occurs on the inner mitochondrial membrane, electrons from NADH and FADH2 are transferred through the electron transport chain, creating a proton gradient that drives ATP synthesis
Biological Oxidations
- Fundamental process in cellular respiration, facilitating efficient energy production
- Cells convert nutrients into energy through electron transfer
- Oxidation: Loss of electrons during a reaction
- Reducing agent: Donates electrons, becoming oxidized
- Oxidizing agent: Gains electrons, becoming reduced
- Enzymes and coenzymes facilitate biological oxidations
- Importance: Essential for ATP generation, balancing energy production and consumption, and influencing metabolic pathways
Oxidation-reduction Reactions (Redox)
- Chemical reactions involving electron transfer between species
- Oxidation: Loss of electrons
- Reduction: Gain of electrons
- Integrated with metabolism for energy balance and cellular activities, playing crucial roles in energy production, metabolic regulation, and biosynthesis
Gibbs Free Energy (G)
- Portion of total energy available for useful work
- ∆G: Change in free energy
- During complete glucose oxidation, a large amount of energy is made available
Enzyme and Coenzyme in Biological Oxidation
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Enzymes: Proteins that act as biological catalysts, accelerating reactions, including oxidoreductases
- Oxidases, Dehydrogenases, Hydroperoxidases, Oxygenases
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Coenzymes: Organic compounds required by enzymes for catalytic activity
- Nicotinamide adenine dinucleotide (NAD+), Nicotinamide adenine dinucleotide phosphate (NADP+), Flavin mononucleotide (FMN), Flavin adenine dinucleotide (FAD)
NAD+ and NADPH in Catabolism and Anabolism
- Catabolic reactions are generally oxidative, reducing substrates (carbohydrates, fats, and proteins)
- NAD+ is reduced to NADH during catabolism
- Anabolism is reductive, using NADPH, a phosphorylated form of NADH, to convert small molecules into complex ones
Pyruvate Dehydrogenase Complex (PDC)
- Enzyme complex that catalyzes the conversion of pyruvate to Acetyl-CoA
- Composed of three enzymes: Pyruvate dehydrogenase (E1), Dihydrolipoyl transacetylase (E2), Dihydrolipoyl dehydrogenase (E3)
- Binds to three cofactors: Thiamin pyrophosphate (TPP), Lipoamide, Flavin adenine dinucleotide (FAD)
- Regulated by both reactants/products and enzymes
- Activators: NAD+, CoA
- Inhibitors: Acetyl-CoA and NADH
- Pyruvate dehydrogenase kinase (inhibits) and pyruvate dehydrogenase phosphatase (activates)
TCA Cycle (Krebs Cycle)
- Occurs in the mitochondrial matrix
- Acetyl-CoA produced from catabolic pathways is completely oxidized to CO2
- Converts NAD+ and FAD into NADH and FADH2, which are further oxidized by the electron transport chain to generate ATP
- Key regulatory point for metabolism
Reactions of TCA Cycle
- Step 1: Condensation of oxaloacetate with acetyl-CoA to form citrate. Catalyzed by citrate synthase. Irreversible, a key regulatory point.
- Step 2: Isomerization of citrate to isocitrate. Catalyzed by aconitase. Reversible.
- Step 3: First oxidative decarboxylation of isocitrate to α-ketoglutarate. Catalyzed by isocitrate dehydrogenase. Irreversible, rate-limiting step.
- Step 4: Second oxidative decarboxylation of α-ketoglutarate to succinyl-CoA. Catalyzed by α-ketoglutarate dehydrogenase. Irreversible.
- Step 5: Succinyl-CoA is converted to succinate, producing GTP. Catalyzed by succinyl-CoA synthetase. Reversible.
- Step 6: Oxidation of succinate to fumarate, reducing FAD to FADH2. Catalyzed by succinate dehydrogenase. Reversible.
- Step 7: Hydration of fumarate to malate. Catalyzed by fumarase. Reversible.
- Step 8: Oxidation of malate to oxaloacetate, reducing NAD+ to NADH. Catalyzed by malate dehydrogenase. Reversible.
Summary of TCA Cycle
- For each acetyl-CoA molecule:
- Two CO2 molecules
- Three NADH molecules
- One FADH2 molecule
- One GTP/ATP molecule
Roles of TCA Cycle
- Energy Production: Generates ATP through oxidation of Acetyl-CoA
- Biosynthesis: Provides intermediates for anabolic pathways
- Metabolic Regulation: Links to other pathways, contributing to metabolic homeostasis
TCA Cycle: Energy Production and Intermediates
- Amphibolic Pathway: The TCA cycle plays a dual role in metabolism, serving both catabolic (breaking down) and anabolic (building up) processes.
- Catabolic Function: It breaks down carbohydrates to generate energy.
- Anabolic Function: It provides precursors for biosynthesis, such as amino acids and nucleotides.
Metabolic Intermediates (Metabolic Hub)
- Biosynthesis Sources: The cycle supplies intermediates for pathways involved in the creation of amino acids and nucleotides.
- Anaplerotic Reactions: These reactions replenish the intermediates of the TCA cycle that are removed for other metabolic processes, primarily by converting pyruvate to oxaloacetate.
- Maintaining the Cycle: Anaplerotic reactions are essential for ensuring the continuous operation of the TCA cycle by providing a steady supply of oxaloacetate, a critical four-carbon intermediate.
Linking Pathways
- Integration with Glycolysis: The TCA cycle connects carbohydrate metabolism to energy production by accepting pyruvate, a product of glycolysis.
- Fatty Acid Oxidation: Acetyl-CoA, derived from the breakdown of fatty acids, enters the TCA cycle, integrating lipid and carbohydrate metabolism.
Regulation of Metabolism
- Substrate Availability: Regulation of the TCA cycle is influenced by the availability of substrates, such as pyruvate and acetyl-CoA.
- Energy Needs: The cycle is sensitive to the cells' energy demands, responding to levels of ATP, ADP, and NADH.
- Feedback Mechanisms: Feedback mechanisms ensure that the activity of the TCA cycle is tightly controlled to maintain cellular energy homeostasis.
Removal of Metabolic Wastes
- CO₂ Production: The TCA cycle produces carbon dioxide, facilitating the removal of carbon waste from the body and maintaining acid-base balance.
Anaplerotic Reactions
- Oxaloacetate Replenishment: While oxaloacetate is regenerated during the TCA cycle, metabolic pathways can deplete it.
- Four-Carbon Acids: Anaplerotic reactions replenish the TCA cycle with four-carbon acids to ensure its continued function.
- Pyruvate Carboxylase: The enzyme pyruvate carboxylase plays a crucial role in anaplerotic reactions by converting pyruvate and carbon dioxide into oxaloacetate.
Regulation of TCA Cycle Activity
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Enzymes: The TCA cycle is regulated by the activity of several key enzymes, including:
- Pyruvate dehydrogenase: Regulates the production of acetyl-CoA.
- Citrate synthase: Controls the first step of the cycle.
- Isocitrate dehydrogenase: Regulates the third step of the cycle.
- α-ketoglutarate dehydrogenase: Controls the fourth step of the cycle.
Biological Oxidations
- Cellular Respiration: Biological Oxidations are central to energy production in living organisms.
- Electron Transfer: These reactions involve the transfer of electrons, resulting in the oxidation of substrates.
- Energy Release: The chemical systems transition from a higher to a lower energy level, releasing energy.
- ATP Formation: This released energy is converted into chemical energy through ATP (adenosine triphosphate) formation.
- Enzymes and Coenzymes: Biological Oxidations are facilitated by enzymes and coenzymes.
Importance of Biological Oxidations
- ATP Production: Essential for generating ATP, the cell's energy currency.
- Metabolic Regulation: Helps balance energy production and consumption, influencing various metabolic pathways.
Oxidation-Reduction Reactions (Redox)
- Electron Transfer: A type of chemical reaction involving the transfer of electrons between two species.
- Reduced and Oxidized Halves: Reactions involve a reduced half and an oxidized half.
- Metabolic Integration: Redox reactions are critical for energy balance, supporting cellular activities like energy production, metabolic regulation, and biosynthesis.
Oxidation
- Electron Loss: A molecule, atom, or ion losing electrons during a reaction.
- Oxidizing Agent: Gains or accepts electrons in a redox reaction.
Reduction
- Electron Gain: A molecule, atom, or ion accepting electrons during a reaction.
- Reducing Agent: Donates electrons in a redox reaction.
Free Energy
- Gibbs Free Energy (G): Represents the portion of total energy readily available for useful work.
- ∆G: Change in Free Energy.
- Complete Glucose Oxidation: Produces a substantial amount of energy, with a maximum ATP yield of -2,864 kJ/mol.
- Lipid Caloric Value: Lipids, like palmitate, have a calorific value nearly three times greater than carbohydrates and proteins.
High-Energy Compounds and Bonds
- High-Energy Compounds: Their hydrolysis products are more stable than the original compound, releasing energy.
- Energy-Rich Compounds: Produce free energy greater than or equal to ATP upon hydrolysis.
- Phosphate Groups: Most high-energy compounds contain phosphate groups.
- High-Energy Bonds: Present in high-energy compounds, producing energy during hydrolysis.
Pyruvate Oxidation in Cellular Respiration
- Pyruvate Oxidation: Key step linking glycolysis to the TCA cycle, converting pyruvate to Acetyl-CoA.
- Mitochondrial Matrix: Takes place in the mitochondrial matrix.
- Complete Glucose Oxidation: Enables complete oxidation of glucose.
- ATP production: Essential for ATP production and overall cellular metabolism.
Acetyl Coenzyme A (Acetyl-CoA)
- Key Metabolic Intermediate: Involved in a wide range of metabolic pathways.
- Acetyl Group: Composed of an acetyl group (CH₃CO−) linked to coenzyme A.
- Glucose, Fatty Acids, and Amino Acids: Produced during the breakdown of these molecules.
- Energy Production: Critical for the TCA cycle, generating ATP.
- Biosynthesis: Precursor for biosynthesis of fatty acids, cholesterol, and ketone bodies.
- Amino Acid Metabolism: Participates in the metabolism of specific amino acids.
Pyruvate
- Conjugate Base of Pyruvic Acid: A key intermediate in various biological processes.
- Chemical Formula: C₃H₄O₃
- Glycolysis End Product: Produced during glycolysis, representing the end product of glucose breakdown.
- Amino Acid Degradation: Also formed by the degradation of amino acids.
Pyruvate Function
- Energy Production: Converted to Acetyl-CoA for entry into the TCA cycle.
- Anaerobic Conditions: Reduced to lactate in the absence of oxygen (anaerobic conditions).
- Metabolic Hub: Connects carbohydrate metabolism to fat and protein metabolism.
Pyruvate Oxidation
- Definition: The conversion of pyruvate into Acetyl-CoA, bridging glycolysis to the TCA cycle.
- Location: Occurs in the mitochondrial matrix of eukaryotic cells.
- Three Steps:
- Decarboxylation: Pyruvate loses a carbon dioxide molecule (CO2).
- Oxidation: Pyruvate loses electrons which are picked up by NAD+ to form NADH.
- Acetyl-CoA Formation: The remaining two-carbon unit combines with Coenzyme A to form Acetyl-CoA.
Pyruvate Oxidation and its Importance
- Energy Production: Generates NADH and FADH2 for ATP synthesis using the electron transport chain.
- Metabolic Intermediates: Contributes to the biosynthesis of amino acids and nucleotides.
- Metabolic Hub: Connects carbohydrate metabolism to energy production.
- Regulation of Metabolism: Sensitive to energy needs.
- Metabolic Waste Removal: CO2 Production facilitates waste removal, maintaining acid-base balance.
TCA Cycle (Krebs Cycle or Citric Acid Cycle)
- Mitochondrial Matrix: Occurs in the mitochondrial matrix.
- Acetyl-CoA Oxidation: Completes the oxidation of Acetyl-CoA, generating key energy carriers.
- Energy Carriers: Produces NADH, FADH2, and GTP (or ATP).
- Amphibolic Pathway: Serves in both catabolism (breakdown) and anabolism (synthesis) pathways.
Roles of TCA Cycle
- Catabolism and Anabolism: Central to both breakdown of carbohydrates (catabolism) and synthesis of essential molecules (anabolism).
Anaplerotic Reactions
- Intermediates Replenishment: Reactions that replenish the TCA cycle intermediates to maintain its function.
- Oxaloacetate Regeneration: Essential as oxaloacetate is regenerated throughout the cycle.
- Four-Carbon Acids: Provides a source of four-carbon acids to replace lost oxaloacetate.
- Pyruvate Carboxylase: The key enzyme in anaplerotic reactions, converting pyruvate and CO2 to oxaloacetate.
Regulation of TCA Cycle Activity
- Enzymes: Key enzymes involved in the regulation.
- Pyruvate Dehydrogenase: Produces Acetyl-CoA, a key starting point.
- Citrate Synthase: First step of the cycle.
- Isocitrate Dehydrogenase: Third step of the cycle.
- α-Ketoglutarate Dehydrogenase: Fourth step of the cycle.
- Substrate Availability: The presence of substrates (e.g., Acetyl-CoA, oxaloacetate) promotes cycle activation.
- Product Accumulation: Product buildup (e.g., ATP) inhibits the cycle.
- NADH and ATP: Inhibit all regulated enzymes.
- NAD+ and AMP: Activate all regulated enzymes.
Diseases Associated with TCA Cycle
- Mitochondrial Disorders: Genetic defects in mitochondrial function can impair the TCA cycle, leading to energy production failure.
- Cancer: Altered TCA cycle activity, often linked to mutations in key enzymes, is observed in many cancers.
- Metabolic Disorders: Impaired TCA cycle activity contributes to lipid accumulation (hyperlipidemia) and diabetes.
- Neurodegenerative Diseases: Reduced TCA cycle activity is linked to energy deficits in neurons, contributing to neurodegeneration.
TCA Cycle Mutations and Diseases
- Mutations in TCA cycle enzymes: Can lead to various cancers.
- Potential Treatments: Pharmacological and genetic therapeutic approaches offer potential treatment options.
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Explore the vital functions of mitochondria in eukaryotic cells and their role in cellular respiration. Understand the structure of mitochondria and the processes involved in ATP production and energy conversion. Test your knowledge on how these organelles support life at the cellular level.