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Questions and Answers
What is the primary cause of decubitus ulcers?
What is the primary cause of decubitus ulcers?
Which organism is NOT associated with diabetic foot ulcers?
Which organism is NOT associated with diabetic foot ulcers?
What is a recommended specimen type for culture in suspected anaerobic infections?
What is a recommended specimen type for culture in suspected anaerobic infections?
Which of the following is a key feature of microscopic examination using Gram stain?
Which of the following is a key feature of microscopic examination using Gram stain?
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Which culture method is NOT typically used for anaerobic infections?
Which culture method is NOT typically used for anaerobic infections?
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Which organism is primarily associated with Staphylococcal scalded-skin syndrome?
Which organism is primarily associated with Staphylococcal scalded-skin syndrome?
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What type of transport media is recommended for specimens collected for anaerobic culture?
What type of transport media is recommended for specimens collected for anaerobic culture?
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What condition is characterized by inflammation with pus and often includes the Group A streptococci?
What condition is characterized by inflammation with pus and often includes the Group A streptococci?
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Which of the following conditions is linked with erythema migrans?
Which of the following conditions is linked with erythema migrans?
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Which of the following organisms is commonly associated with human bite wound infections?
Which of the following organisms is commonly associated with human bite wound infections?
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What type of infection is characterized by a diffuse infection in deep epidermis and subcutaneous tissue?
What type of infection is characterized by a diffuse infection in deep epidermis and subcutaneous tissue?
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Which organism is specifically associated with gas gangrene?
Which organism is specifically associated with gas gangrene?
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An infection that results from the obstruction of oil or sweat glands is likely to be classified as which of the following?
An infection that results from the obstruction of oil or sweat glands is likely to be classified as which of the following?
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What is the primary causative organism of erysipelas, a painful superficial skin infection?
What is the primary causative organism of erysipelas, a painful superficial skin infection?
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Which organism is linked to infections from contaminated hot tubs?
Which organism is linked to infections from contaminated hot tubs?
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Which of the following types of bacteria are part of the normal skin flora?
Which of the following types of bacteria are part of the normal skin flora?
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What is the typical incubation period for Tularemia?
What is the typical incubation period for Tularemia?
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Which of the following descriptions pertains to the appearance of colonies on SBA for the bacteria responsible for Tularemia?
Which of the following descriptions pertains to the appearance of colonies on SBA for the bacteria responsible for Tularemia?
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What is the mortality rate for untreated Tularemia?
What is the mortality rate for untreated Tularemia?
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What primary animal is associated with the transmission of Francisella tularensis?
What primary animal is associated with the transmission of Francisella tularensis?
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Which of the following conditions is NOT related to Tularemia?
Which of the following conditions is NOT related to Tularemia?
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Which feature characterizes Brucellosis as described?
Which feature characterizes Brucellosis as described?
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What is the infective dose for Tularemia?
What is the infective dose for Tularemia?
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How long can the Tularemia organism persist in moist soil?
How long can the Tularemia organism persist in moist soil?
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What is the most common organism associated with osteomyelitis?
What is the most common organism associated with osteomyelitis?
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Which specimen collection method is used to diagnose conjunctivitis?
Which specimen collection method is used to diagnose conjunctivitis?
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What type of culture is primarily recommended for malignant otitis externa?
What type of culture is primarily recommended for malignant otitis externa?
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Which condition is characterized by inflammation of the cornea?
Which condition is characterized by inflammation of the cornea?
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What distinguishes an overt bioterrorism event from a covert one?
What distinguishes an overt bioterrorism event from a covert one?
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Which organism is commonly involved in malignant otitis externa?
Which organism is commonly involved in malignant otitis externa?
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In which situation is bone marrow culture primarily indicated?
In which situation is bone marrow culture primarily indicated?
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What is the main characteristic of endophthalmitis?
What is the main characteristic of endophthalmitis?
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What is one of the first signs of a biological attack?
What is one of the first signs of a biological attack?
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Which of the following is a characteristic of bioterror agents?
Which of the following is a characteristic of bioterror agents?
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What is the cost of anthrax compared to conventional weapons for achieving 50% casualties over a 1 sq/km area?
What is the cost of anthrax compared to conventional weapons for achieving 50% casualties over a 1 sq/km area?
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What method can biological agents be delivered via?
What method can biological agents be delivered via?
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Which organization established the Laboratory Response Network (LRN)?
Which organization established the Laboratory Response Network (LRN)?
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In which laboratory level does confirmatory testing take place within the LRN?
In which laboratory level does confirmatory testing take place within the LRN?
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What is a significant factor that affects the dissemination of biological agents?
What is a significant factor that affects the dissemination of biological agents?
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Which category does Yersinia pestis fall under in the CDC classification of biological agents?
Which category does Yersinia pestis fall under in the CDC classification of biological agents?
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Which example represents a characteristic of Category B biological agents?
Which example represents a characteristic of Category B biological agents?
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What is a potential impact of a bioterror attack classified as Category A?
What is a potential impact of a bioterror attack classified as Category A?
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What is the most common form of anthrax exposure?
What is the most common form of anthrax exposure?
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What is the mortality rate associated with gastrointestinal anthrax?
What is the mortality rate associated with gastrointestinal anthrax?
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What type of specimen is collected for diagnosing inhalation anthrax?
What type of specimen is collected for diagnosing inhalation anthrax?
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Which symptoms are NOT associated with inhalation anthrax?
Which symptoms are NOT associated with inhalation anthrax?
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What form of plague is characterized by infected lymph nodes?
What form of plague is characterized by infected lymph nodes?
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Which of the following anthrax types requires ingestion of spores for infection?
Which of the following anthrax types requires ingestion of spores for infection?
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Which type of plague is considered the deadliest due to its transmissibility?
Which type of plague is considered the deadliest due to its transmissibility?
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What is NOT a common symptom of pneumonic plague?
What is NOT a common symptom of pneumonic plague?
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What type of bacterium is responsible for anthrax?
What type of bacterium is responsible for anthrax?
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What is a laboratory method used to identify Bacillus anthracis?
What is a laboratory method used to identify Bacillus anthracis?
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Study Notes
Skin and Soft Tissue
- Skin is the outermost layer, comprising epidermis (outermost layer), dermis (hair follicles, sebaceous glands, sweat glands), subcutaneous layer (fat), fascia (fibrous tissue), and muscles.
- Wound infections can result from trauma, blockage of glands, hair follicle inflammation.
- Infecting organisms can be endogenous (normal flora) or exogenous (outside the body).
- Single or multiple organisms can cause infections.
- Identifying and isolating colony types is crucial for mixed cultures.
- Normal skin flora includes staphylococci (S. epidermidis & S. aureus), diphtheroids (Corynebacterium), micrococci, streptococci (non-hemolytic), Propionibacterium acnes, anaerobes, and yeast.
- Dermatitis is skin inflammation, caused by Candida spp., S. aureus, coliforms, Corynebacterium spp., and molds (Dermatophytes).
- Pyoderma is inflammation with pus, including Impetigo (blister-like infection, Group A streptococci, S. aureus), Erysipelas (superficial, painful, Group A streptococci, S. aureus), Anthrax (rarely).
- Erysipeloid is superficial soft-tissue infection, associated with animal products, caused by Erysipelothrix rhusiopathiae.
- Cellulitis is deep epidermis and subcutaneous tissue infection, caused by Group A streptococci, S. aureus.
- Folliculitis is infected hair follicles (sometimes P. aeruginosa).
- Furuncles (boils) are deep hair follicle infections.
- Carbuncles involve multiple hair follicles.
- Abscesses are pus collections in skin and subcutaneous tissue.
- Soft tissue (wound) infections involve injured tissue (surgery, burns, bites) caused by various organisms, including S. aureus, streptococci, and anaerobes. Also, burn wounds are caused by S. aureus, and P. aeruginosa
- Animal bites can cause infection due to Pasteurella multocida, Capnocytophaga canimorsus, S. aureus, anaerobes, and rabies.
- Human bites can cause infection due to S. aureus, alpha.
- Myonecrosis is severe muscle infection (gas gangrene) caused by C. perfringens.
- Necrotizing fasciitis is very severe fascia infection caused by Group A strep, and S. aureus.
- Decubitus ulcers are bedsores caused by bacteria near the rectum (Enterobacteriaceae, Pseudomonas, Enterococci).
- Diabetic foot ulcers take a long time to heal, caused by S. aureus, streptococci, enterococci, Enterobacteriaceae, Pseudomonas aeruginosa, and anaerobes.
- Nodular lymphangitis has causative agents Sporothrix schenckii, Nocardia spp., Actinomyces spp., and Mycobacteria.
- Dermatological manifestations of systemic infections include rashes from Borrelia burgdorferi (erythema migrans), T. pallidum, Rickettsiae, Leptospira, and Mycobacterium leprae.
- Viral causes include measles (Rubeola and Rubella), chickenpox/shingles (Varicella-Zoster Virus), Herpes Simplex Virus, and Warts (HPV)
- Toxin-mediated skin diseases, include Staphylococcal scalded-skin syndrome, Toxin shock syndrome, S. aureus and S. pyogenes, and Scarlet fever (S. pyogenes).
- Specimen collection and transport methods include avoiding surface contamination, decontaminating skin or mucous membranes, using tissue/pus aspirates instead of swabs, and keeping samples moist for transport. Swabs are typically less desirable, and anaerobic infections require specific transport media.
- Microscopic examination includes Gram stains for detection of clinically significant organisms, quality control of specimens (reject if many epithelial cells), and wet mounts with KOH and calcofluor white, and acid-fast stains.
- Routine cultures use BAP, CHOC, MAC, and PEA media, and CO2 incubation at 35°C.
- Anaerobic cultures are recommended for closed wounds and abscesses.
- Other cultures may include Lowenstein-Jensen, Middlebrook (for mycobacteria, viral culture, and shell vials and Sabouraud's agar). Additional cultures may include Eye, Bone, BM, and External ear samples.
- Eye cultures often involve NF of the mucous membrane, Corynebacterium, Viridans strep., Moraxella catarrhalis, staphylococci (S. aureus and CONS), Haemophlius influenzae, anaerobes, and GNR.
- Conjunctivitis, keratitis, and endophthalmitis are eye diseases. Eye specimen collection includes conjunctival swabs and corneal scrapings with special spatulas. Eye chamber fluid can be used for endophthalmitis. Processing may involve gram staining, and MAC, CHOC, BAP culture, and anaBAP.
- Osteomyelitis is a bone infection often caused by S. aureus. Bone cultures are commonly performed in enriched broth and on agar media (CHO). Bone marrow cultures are conducted for detecting Brucella or Mycobacteria.
- External Ear infections and cultures, often from Moisture-related otitis externa ("swimmer's ear") and malignant otitis externa (severe, sometimes with underlying conditions like diabetes). Specimens may involve debris from the ear canal, collected with swabs, followed by gram stain and BAP, CHOC, and MAC culture growth.
- Agents of Bioterrorism are harmful microorganisms or toxins used in unlawful attacks.
Bioterrorism
- Bioterrorism is the intentional use or threat of living organisms or toxins to harm humans, animals, or plants.
- The goal is to instigate fear and intimidate governments or societies.
- Bioterrorism can have immediate, overt impacts or delayed, covert responses.
- The past has seen incidents involving rye ergot, Bacillus anthracis, Pseudomonas mallei, salmonella, and Bacillus anthracis in recent history.
- Bioterrorist agents are frequently inexpensive and easy to produce, causing widespread fear.
- Traits of bioterrorist agents include being odorless, colorless, or tasteless and affecting humans first through illness.
- Common delivery methods include food/water contamination, aerosol dispersal, using vehicle sprayers, hand sprayers, aircraft sprayers, and mail systems.
Laboratory Response Network (LRN)
- The LRN was developed by the CDC in 1999.
- The LRN is a network of labs designed to respond to biological or chemical threats, following predetermined protocols and providing timely, accurate test results.
- LRN laboratories are organized as sentinel laboratories (clinical) and reference laboratories.
- Sentinel labs receive specimens, recognize potential issues, rule out certain things, and then refer to reference labs of the LRN. Reference labs provide confirmatory testing, while more specialized national labs (CDC, Military, Bioforensics) conduct definitive characterization.
Category A, B, and C Biological Agents
- Category A agents have high mortality, ease of spread, and potential for mass panic; they include anthrax, smallpox, botulism, and plague.
- Category B agents are moderately easy to spread with moderate illness but with lower mortality; they include E. coli O157:H7, staphylococcus enterotoxins, ricin.
- Category C agents are emerging threats that have the potential to quickly spread and become serious health threats; they include Nipah virus, hantavirus, and others
Anthrax (Bacillus anthracis)
- Anthrax is a gram-positive, spore-forming bacillus, occurring in different forms (cutaneous, gastrointestinal, inhalational).
- Cutaneous anthrax presents as a skin lesion evolving over 2-6 days, initially as a papule, progressing to a vesicle and a black eschar.
- Gastrointestinal anthrax involves spores with an incubation period of 2–5 days, marked by nausea, vomiting, bloody diarrhea, and death. Mortality is about 50%
- Inhalation anthrax involves spores, a brief prodrome resembling a viral respiratory illness, and radiographic evidence of mediastinal widening; flu-like symptoms, respiratory failure, and meningitis can develop. The mortality rate is high (50–80% untreated).
Plague (Yersinia pestis)
- Plague is an acute bacterial infection spread mainly by fleas.
- It can manifest in different forms (bubonic, septicemic, or pneumonic).
- Bubonic plague is characterized by swollen lymph nodes (buboes) with flu-like symptoms.
- Septicemic plague has symptoms similar to bubonic, with no lymph node swelling, and is marked by bloodborne organisms.
- Pneumonic plague, marked by rapid transmission, fever, hemoptysis (coughing up blood), lymphadenopathy, and cough, has the highest mortality rate.
- Specimens for plague include sputum, bronchial washings/aspirates, environmental samples, and fleas.
- Gram-negative bacteria (GNR) identification includes safety pin appearance, slow growth, non-motile colonies on MacConkey agar (MAC) and slow growth in general.
Tularemia (Francisella tularensis)
- Tularemia is a zoonotic infection spread to humans from animals (rabbits, ticks).
- Its manifestations include localized swelling, ulcers, or a flu-like illness that spreads systemically
- A person can contract tularemia through various ways including ticks, water-rats, or deer-flies
- Specimens for tularemia analysis include serum, tissue, lesion aspirates, sputum, and environmental samples.
- Identifying tularemia involves using pleomorphic, small gram-negative rods, slow growth, non-motile colonies on special media like SBA, CHOC, and MTM, and lack of oxidase, urea, or indole activity.
Brucellosis (Brucella species)
- Brucellosis (Malta fever or undulant fever) is an infection that involves unpasteurized dairy products, or direct skin contact, often in occupations like farming or veterinary practices.
- It exhibits a long incubation period (5 days - 6 months).
- The characteristic symptoms can include fever, profuse sweating, malaise, and muscle/back pain and No person-to-person transmission, and mortality rate is less than 5 percent.
- Specimens for analysis span blood, bone marrow, tissue, spleen, liver, and environmental or evidentiary material.
- Identifying Brucella involves using slow-growing, aerobic bacteria that can be cultured on BAP and CHOC media exhibiting catalase, oxidase, and urea positivity.
Burkholderia Species (B. mallei and B. pseudomallei)
- Burkholderia Species include B. mallei (glanders) and B. pseudomallei (meliodosis), transmitted through direct contact or occupational hazards; animal contact, and direct exposure.
- These species have incubation times ranging from 1 to 2 weeks, presenting in different manners with cutaneous, systemic, or pneumonia-type symptoms.
- Specimens include blood, bone marrow, sputum, bronchial alveolar lavage, abscess material, urine, and serum samples.
Q Fever (Coxiella burnetii)
- Q fever is an infection caused by inhaling infected animals or their excretions.
- Symptoms include a flu-like illness, pneumonia, and hepatitis.
- The mortality rate is approximately 2%.
- Specimens include blood, serum, body fluids, visceral tissue, biopsy, and autopsy samples.
Smallpox (Variola major)
- Smallpox is an orthopoxvirus-borne disease involving a DNA virus.
- It's now eradicated around the world, with only a couple labs holding reference specimens.
- The virus has a brick-like structure, a relatively short incubation period (8 - 16 days), and is spread via droplets.
- Clinical forms include ordinary smallpox (high mortality), modified smallpox, flat smallpox, and hemorrhagic smallpox.
- Smallpox starts with flu-like symptoms and then develops a rash, spreading through the body, turning into raised lesions, and eventually scabs. Specimens, usually with the onset of the rash, would include materials collected from the lesions.
Botulism (Clostridium botulinum)
- Botulism is a neuroparalytic illness from a toxin; characterized by different types of botulinum toxin.
- Botulism can occur from food poisoning, wound infections, or infections from injected substances (like heroin).
Ricin
- Ricin is a toxin derived from castor bean waste, occurring in various forms (mist, powder, pellets).
- It is a remarkably stable substance, easily inhaled, or ingested, leading to significant morbidity.
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Description
Test your knowledge on the causes and characteristics of various infections, including decubitus ulcers, diabetic foot ulcers, and anaerobic infections. This quiz covers key features of microorganisms, culture methods, and associated conditions, providing a comprehensive review of clinical microbiology concepts.