Microbiology: Prokaryotes vs Eukaryotes
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Microbiology: Prokaryotes vs Eukaryotes

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Questions and Answers

What is a key difference between prokaryotic and eukaryotic cells?

  • Number of cell membranes
  • Size of the cell
  • Presence of DNA
  • Presence of a nucleus (correct)
  • Which of the following statements correctly describes bacterial cells?

  • They have multiple linear chromosomes.
  • They contain mitochondria.
  • They are usually larger than eukaryotic cells.
  • They typically have a cell wall. (correct)
  • What does the Gram stain primarily differentiate between?

  • Live and dead bacteria
  • Cell shape and size
  • Gram-positive and Gram-negative bacteria (correct)
  • Bacteria and viruses
  • What cellular structures are absent in prokaryotes?

    <p>Organelles</p> Signup and view all the answers

    Which type of bacteria is classified as Gram-positive?

    <p>Streptococcus pneumoniae</p> Signup and view all the answers

    What is the process by which bacteria divide?

    <p>Binary Fission</p> Signup and view all the answers

    Which of the following is NOT a requirement for bacterial growth?

    <p>Hormones</p> Signup and view all the answers

    In bacterial growth, what process breaks down organic substrates to derive energy?

    <p>Catabolism</p> Signup and view all the answers

    What is the shape of bacterial DNA?

    <p>Circular</p> Signup and view all the answers

    What components are nucleotides of DNA made of?

    <p>Base, Deoxyribose, Phosphate</p> Signup and view all the answers

    How many genes are estimated to be found in a typical bacterial genome?

    <p>4000</p> Signup and view all the answers

    What can influence bacterial growth in terms of environmental conditions?

    <p>Oxygen levels</p> Signup and view all the answers

    What drives the emergence of antibiotic-resistant bacteria?

    <p>Genetic variation processes</p> Signup and view all the answers

    What is the principal component of the bacterial cell wall that prevents osmotic lysis?

    <p>Peptidoglycan</p> Signup and view all the answers

    Which statement best describes the Gram-positive cell envelope?

    <p>It has multiple layers of peptidoglycan.</p> Signup and view all the answers

    What is one function that the capsule or slime layer provides to bacterial cells?

    <p>Offers protection from phagocytosis</p> Signup and view all the answers

    Which type of bacteria can form spores to withstand adverse conditions?

    <p>Gram-positive bacteria</p> Signup and view all the answers

    Which of the following describes biofilms?

    <p>Aggregates of bacteria forming a structured layer.</p> Signup and view all the answers

    What role do flagella play in bacteria?

    <p>Facilitation of motility</p> Signup and view all the answers

    Why are biofilm infections particularly difficult to treat?

    <p>Biofilms prevent antibiotic penetration.</p> Signup and view all the answers

    What is a characteristic of Gram-negative bacteria compared to Gram-positive bacteria?

    <p>Presence of an outer membrane</p> Signup and view all the answers

    What is the most common source of genetic variation?

    <p>Gene mutations</p> Signup and view all the answers

    What are the three types of gene mutations?

    <p>Substitution, Deletion, Insertion</p> Signup and view all the answers

    What is the possible consequence of a substitution mutation?

    <p>No effect on protein function</p> Signup and view all the answers

    What occurs as a result of a deletion mutation?

    <p>Misreading of triplet codons</p> Signup and view all the answers

    What is a frameshift mutation?

    <p>A deletion or insertion that alters the reading frame</p> Signup and view all the answers

    What can potentially result from frameshift mutations?

    <p>Production of non-functional proteins</p> Signup and view all the answers

    Which of the following types of mutations usually affect only one amino acid?

    <p>Substitution</p> Signup and view all the answers

    Which genetic elements can carry antibiotic resistance genes?

    <p>Plasmids</p> Signup and view all the answers

    Which enzyme is responsible for unwinding double-stranded DNA during transcription?

    <p>Helicase</p> Signup and view all the answers

    What is the role of RNA polymerase in the process of transcription?

    <p>It adds nucleotides to the growing RNA strand</p> Signup and view all the answers

    How does the ribosome contribute to protein synthesis?

    <p>It threads the mRNA to decode it</p> Signup and view all the answers

    What defines an open-reading frame (ORF) in gene structure?

    <p>A coding sequence that can be translated into protein</p> Signup and view all the answers

    What is one clinical significance of plasmids?

    <p>They can confer antibiotic resistance</p> Signup and view all the answers

    Which process involves the decoding of mRNA by ribosomes and tRNA?

    <p>Translation</p> Signup and view all the answers

    What happens during the termination phase of transcription?

    <p>Terminator sequences signal the end of transcription</p> Signup and view all the answers

    Which enzyme is responsible for joining Okazaki fragments during DNA replication?

    <p>Ligase</p> Signup and view all the answers

    What is the main reason antibiotic misuse can lead to antibiotic resistance?

    <p>Antibiotics can increase mutation rates</p> Signup and view all the answers

    Which structural feature differentiates Gram-positive bacteria from Gram-negative bacteria?

    <p>Thicker cell wall</p> Signup and view all the answers

    Which of the following is not a mechanism by which plasmids can contribute to antibiotic resistance?

    <p>Facilitating biofilm formation</p> Signup and view all the answers

    What role do mutations play in the development of antibiotic resistance in bacteria?

    <p>They contribute to genetic diversity</p> Signup and view all the answers

    Which statement best describes the importance of biofilms in bacterial infections?

    <p>They can shield bacteria from immune responses.</p> Signup and view all the answers

    What is the characteristic feature of Gram-negative bacteria in terms of their cell envelope composition?

    <p>High lipid content in their cell envelope</p> Signup and view all the answers

    Which statement accurately describes the effect of alcohol treatment on Gram-positive bacteria?

    <p>It makes the cell envelope impermeable.</p> Signup and view all the answers

    What is the primary function of the cytoplasmic membrane in bacteria?

    <p>Regulating the transport of molecules</p> Signup and view all the answers

    Which of the following bacteria is known to not stain with the Gram method due to its unique cell structure?

    <p>Mycobacteria</p> Signup and view all the answers

    Which morphological shape is classified as cocci in bacteria?

    <p>Spherical</p> Signup and view all the answers

    What occurs to the crystal violet-iodine complex during the staining process of Gram-negative bacteria?

    <p>It diffuses out due to high lipid content.</p> Signup and view all the answers

    What role do plasmids play in bacterial cells?

    <p>They carry additional genetic information.</p> Signup and view all the answers

    Which component is specifically involved in the transport of molecules within the cytoplasmic membrane?

    <p>Permeases</p> Signup and view all the answers

    What process do bacteria primarily use for cell division?

    <p>Binary fission</p> Signup and view all the answers

    What is an essential requirement for bacteria to grow?

    <p>Organic substrates</p> Signup and view all the answers

    Which of the following best describes the structure of bacterial DNA?

    <p>Circular, double-stranded helix</p> Signup and view all the answers

    What factor is NOT typically required for bacterial growth?

    <p>Thick cell wall</p> Signup and view all the answers

    Which component is NOT part of a nucleotide in DNA?

    <p>Ribose</p> Signup and view all the answers

    How does genetic variation contribute to bacterial adaptability?

    <p>It creates selective pressures.</p> Signup and view all the answers

    Which factor can influence bacterial growth in an anaerobic environment?

    <p>Lack of oxygen</p> Signup and view all the answers

    What is the approximate number of genes in a typical bacterial genome?

    <p>4000 genes</p> Signup and view all the answers

    What initiates the transcription process in bacterial gene expression?

    <p>RNA polymerase binding to promoter region</p> Signup and view all the answers

    Which molecule serves as the template during protein translation?

    <p>Messenger RNA</p> Signup and view all the answers

    What is the role of RNA polymerase in bacterial transcription?

    <p>Adding nucleotides to the growing RNA strand</p> Signup and view all the answers

    Which of the following accurately describes plasmids in bacteria?

    <p>Extrachromosomal DNA that replicate independently</p> Signup and view all the answers

    During which phase of transcription does RNA polymerase begin producing an RNA transcript?

    <p>Elongation</p> Signup and view all the answers

    What function do tRNA molecules serve in the process of translation?

    <p>They transport amino acids to the ribosome</p> Signup and view all the answers

    Which component is essential for the termination of transcription in bacteria?

    <p>RNA polymerase</p> Signup and view all the answers

    What is the potential consequence of having plasmids with multiple antibiotic resistance genes in bacteria?

    <p>Ability to confer resistance to various antibiotics</p> Signup and view all the answers

    What is the main function of peptidoglycan in bacterial cells?

    <p>To maintain cell shape and prevent osmotic lysis</p> Signup and view all the answers

    Which structure is primarily associated with the Gram-negative bacterial cell envelope?

    <p>Outer membrane with lipopolysaccharide</p> Signup and view all the answers

    What role do capsules and slime layers play in bacterial cells?

    <p>Provide protection from phagocytosis and antibiotics</p> Signup and view all the answers

    Which characteristic is unique to Gram-positive bacteria?

    <p>Has multiple layers of peptidoglycan</p> Signup and view all the answers

    What is a key reason biofilm infections are challenging to treat?

    <p>Biofilms form protective layers that antibiotics cannot penetrate</p> Signup and view all the answers

    What is the primary function of pili in bacterial cells?

    <p>Adherence to surfaces</p> Signup and view all the answers

    Which type of bacteria is unable to form spores?

    <p>Gram-negative</p> Signup and view all the answers

    Which feature of the Gram-positive cell wall contributes to its antigenic properties?

    <p>Teichoic and lipoteichoic acids</p> Signup and view all the answers

    Which statement accurately distinguishes the absence of cellular structures in prokaryotes compared to eukaryotes?

    <p>Prokaryotes lack mitochondria and chloroplasts.</p> Signup and view all the answers

    What characteristic is critical for the differentiation between Gram-positive and Gram-negative bacteria during staining?

    <p>The presence of a thick peptidoglycan layer in Gram-positive bacteria.</p> Signup and view all the answers

    In terms of gene expression, which process directly follows transcription in bacteria?

    <p>Translation of the mRNA into proteins.</p> Signup and view all the answers

    What is the primary role of plasmids in bacterial cells?

    <p>To carry genes that can confer antibiotic resistance.</p> Signup and view all the answers

    Which of the following relates best to the process of bacterial growth?

    <p>Bacterial growth is exponential during the logarithmic phase.</p> Signup and view all the answers

    What structural feature is primarily responsible for the osmotic integrity of bacterial cells?

    <p>Peptidoglycan layers</p> Signup and view all the answers

    Which statement accurately reflects the composition of the Gram-positive cell envelope?

    <p>Has multiple layers of peptidoglycan</p> Signup and view all the answers

    What role do pili play in bacterial cells?

    <p>Facilitate adherence to surfaces</p> Signup and view all the answers

    Which of the following correctly describes the Gram-negative cell envelope?

    <p>Contains an outer membrane with lipopolysaccharides</p> Signup and view all the answers

    What is a significant challenge in treating biofilm-related infections?

    <p>Biofilm cells are less accessible to antibiotics than planktonic cells.</p> Signup and view all the answers

    Which characteristic is true of bacterial spores?

    <p>They provide protection against environmental stress.</p> Signup and view all the answers

    What role does the capsule play in bacterial cells?

    <p>Acts as a barrier to antibiotic penetration</p> Signup and view all the answers

    What is a key function of flagella in bacteria?

    <p>Enabling motility and chemotaxis</p> Signup and view all the answers

    What is the primary method by which bacteria reproduce?

    <p>Binary fission</p> Signup and view all the answers

    What is the primary source of energy for bacterial growth?

    <p>Enzymatic breakdown of substrates</p> Signup and view all the answers

    Which component of bacterial DNA directly contributes to its structural integrity?

    <p>Base pairing</p> Signup and view all the answers

    Which factor does NOT typically influence bacterial growth conditions?

    <p>Presence of preservatives</p> Signup and view all the answers

    What characteristic of the bacterial genome allows for rapid adaptation to hostile environments?

    <p>Presence of plasmids</p> Signup and view all the answers

    What role does catabolism play in bacterial cells?

    <p>Production of energy</p> Signup and view all the answers

    How does bacterial variation contribute to clinical microbiology?

    <p>Facilitating the emergence of resistant pathogens</p> Signup and view all the answers

    What is the approximate number of genes found in a typical bacterial genome?

    <p>4,000 genes</p> Signup and view all the answers

    What is the main purpose of DNA gyrase in the process of DNA replication?

    <p>To catalyze the negative supercoiling of DNA</p> Signup and view all the answers

    How does DNA polymerase ensure the accuracy of DNA replication?

    <p>By proofreading and correcting incorrect bases</p> Signup and view all the answers

    What is the significance of the 5’ to 3’ directionality of DNA polymerase during replication?

    <p>It dictates the direction in which new nucleotides are added</p> Signup and view all the answers

    What are the short DNA fragments formed on the lagging strand called?

    <p>Okazaki fragments</p> Signup and view all the answers

    In which phase of DNA replication does proofreading occur?

    <p>Elongation</p> Signup and view all the answers

    What is the role of RNA primase in the process of DNA replication?

    <p>To lay down RNA primers for DNA polymerase</p> Signup and view all the answers

    What event marks the termination of DNA replication?

    <p>The formation of two identical daughter helices</p> Signup and view all the answers

    What would happen if DNA gyrase function were disrupted?

    <p>Tension in the DNA structure would increase</p> Signup and view all the answers

    What is the primary function of RNA polymerase during transcription?

    <p>It adds nucleotides to the growing RNA strand.</p> Signup and view all the answers

    Which component plays a crucial role in the decoding of mRNA into a protein?

    <p>Ribosomes and tRNA</p> Signup and view all the answers

    During which stage of transcription does RNA polymerase bind to the DNA?

    <p>Initiation</p> Signup and view all the answers

    What is one characteristic of plasmids that distinguishes them from chromosomal DNA?

    <p>Plasmids can replicate independently of chromosomal DNA.</p> Signup and view all the answers

    Which phase of protein synthesis involves the formation of peptide chains?

    <p>Translation</p> Signup and view all the answers

    How do transfer RNA (tRNA) molecules contribute to protein synthesis?

    <p>They transport amino acids to the ribosome.</p> Signup and view all the answers

    What is the purpose of proofreading by DNA polymerase during replication?

    <p>To correct errors in the newly synthesized DNA strand.</p> Signup and view all the answers

    Which enzyme is crucial for joining Okazaki fragments during DNA replication?

    <p>Ligase</p> Signup and view all the answers

    Study Notes

    Prokaryotes vs Eukaryotes

    • Prokaryotes do not possess a nucleus, cell wall or organelles, whereas Eukaryotes have all three.

    Microscopy of Bacteria

    • Used to determine bacterial cell shape, color, and size.
    • The Gram stain is the most crucial differential staining method in Microbiology.

    Cell Wall Structure

    • Peptidoglycan is a unique polysaccharide that gives bacteria their shape and prevents osmotic lysis.
    • Gram-positive bacteria have many layers of peptidoglycan and a thick cell wall.
    • Gram-negative bacteria have one layer of peptidoglycan and a thin cell wall.

    Gram-positive Cell Envelope

    • Contains multiple layers of peptidoglycan along with techoic and lipotechoic acids which extend into the environment.
    • These acids aid in adherence and act as antigenic determinants.

    Gram-negative Cell Envelope

    • Contains an outer membrane with a phospholipid-lipopolysaccharide (LPS) bilayer which acts as a molecular sieve controlling the entry of molecules into the cell.
    • LPS also helps with bacterial attachment and resistance to phagocytosis.

    Clinically Important Bacterial Structures

    • Flagella provide bacteria with motility and chemotaxis.
    • Pili aid in bacterial adherence.
    • Capsules and slime layers protect bacteria from phagocytosis and antibiotics, and facilitate adhesion.
    • Spores (formed by some Gram-positive bacteria) provide protection from adverse conditions.

    Bacterial Biofilms

    • Biofilms are communities of bacteria that form on surfaces and excrete substances that bind them together.
    • Biofilms are difficult to treat due to their structure, as antibiotics have a hard time penetrating them.

    Bacterial Growth

    • Bacteria divide by binary fission, where the chromosome duplicates and divides into two identical copies.
    • This results in exponential growth (1, 2, 4, 8, 16 etc.) and contributes to bacterial adaptability.
    • Growth requires energy, building blocks for cellular machinery, and appropriate environmental conditions like temperature, pH, and oxygen levels.

    Bacterial Genetics and Clinical Significance

    • Bacterial genome is the collection of genes on both the chromosome and plasmids.
    • It contains genetic information necessary for all cellular processes.
    • Understanding bacterial genetics is crucial for understanding:
      • Emergence of antibiotic resistance
      • Development of highly virulent pathogens
      • Development of therapies to combat bacterial infections

    Bacterial DNA

    • Bacterial DNA is a circular molecule of double-stranded DNA.
    • It contains about 4,000 genes and 5 million base pairs.
    • DNA replication has four main steps: initiation, elongation, proofreading and termination.
    • The main enzymes involved in replication are: helicase, DNA polymerase, ligase and gyrase.

    Gene Expression

    • Gene expression translates genetic information from DNA to proteins.
    • Genes can occur individually or in groups called operons.
    • Transcription occurs when RNA polymerase binds to a promoter region and copies the DNA to generate a messenger RNA (mRNA) transcript.
    • Translation is the process through which ribosomes and tRNA molecules decode the mRNA to create a polypeptide chain.

    Plasmids

    • Small circular extrachromosomal DNA molecules that can replicate independently.
    • Often carry genes that confer beneficial traits to the bacteria, such as antibiotic resistance.
    • Play a vital role in the spread of antibiotic resistance.

    DNA Mutations

    • Common source of genetic variation in bacteria.
    • They can be spontaneous or caused by mutagens.
    • Three types: substitution, deletion, and insertion.

    Mutation Effects

    • Substitution mutations can cause minor changes in the protein or even no change at all if they are silent.
    • Deletion mutations can cause frameshift mutations, where the reading frame is shifted, leading to a change in the subsequent amino acid sequence.
    • Insertion mutations can also lead to frameshift mutations and premature termination of translation.
    • Mutations are important to understand because they can lead to changes in the bacteria's functionality, like antibiotic resistance or a more virulent form of the pathogen.

    Gram Staining

    • Gram-positive bacteria stain purple, while Gram-negative bacteria stain pink
    • This differentiation occurs because of the unique composition of the cell envelope
    • Gram-positive bacteria have a thick peptidoglycan layer and a low lipid content, while Gram-negative bacteria have a thin peptidoglycan layer and a high lipid content
    • The alcohol treatment step in the Gram stain dehydrates the peptidoglycan layer of Gram-positive bacteria, making it impermeable to the crystal violet-iodine complex
    • Alcohol extracts the lipid content of the Gram-negative cell envelope, permeabilizing the cell membrane and allowing the crystal violet-iodine complex to diffuse out
    • The counterstain, neutral red, is then taken up by the Gram-negative bacteria, resulting in their pink color

    Non-Gram Stains

    • Some bacteria, like Mycobacteria, have a high wax content in their cell envelope and cannot be stained using the Gram method. These bacteria are stained using the Ziehl-Neelsen stain.
    • Mycoplasmas, the smallest known bacteria, lack a cell wall and cannot be stained using Gram stain.

    Bacterial Morphology

    • Cocci are spherical-shaped bacteria
    • Bacilli are rod-shaped bacteria
    • Some bacteria are curved or spiral-shaped

    Bacterial Cell Structure

    • The bacterial genome, or chromosome, carries the bacterial genetic information.
    • Plasmids, small circular DNA molecules, can also be present.
    • The cytoplasmic membrane surrounds the cytoplasm.
    • The cell wall is a rigid layer that surrounds the cytoplasmic membrane and gives the cell its shape.
    • Gram-negative bacteria have an outer membrane covering the cell wall. This outer membrane acts as a molecular sieve, controlling the entry of molecules into the cell.

    Cytoplasmic Membrane

    • Composed primarily of lipids and phospholipids.
    • Acts as an osmotic barrier, only allowing molecules smaller than glycerol to diffuse into the cytoplasm.
    • Site of energy production through oxidative phosphorylation.
    • Transports essential molecules via permeases using facilitated diffusion (passive) and active transport.
    • Involved in the synthesis of new cell wall material.
    • Anchors the chromosome.

    Bacterial Cell Wall

    • The main component of the cell wall is peptidoglycan, a unique polysaccharide that provides the cell with its shape and prevents osmotic lysis.
    • Gram-positive bacteria have multiple layers of peptidoglycan, accounting for 90% of their cell envelope material. In contrast, Gram-negative bacteria have a single layer of peptidoglycan, accounting for only 2-20% of their cell envelope material.
    • Penicillin disrupts peptidoglycan synthesis, targeting bacterial cell wall formation.
    • Many antigens are presented on the cell wall surface.

    Gram-Positive Cell Envelope

    • Contains multiple layers of peptidoglycan.
    • Contains teichoic acids and lipoteichoic acids, which extend into the environment around the cell.
    • These structures contribute to bacterial adherence and act as antigenic determinants.

    Gram-Negative Cell Envelope

    • Has an outer membrane composed of a phospholipid-lipopolysaccharide (LPS) bilayer.
    • This outer membrane provides an additional layer of protection for Gram-negative bacteria and is why alcohol does not dehydrate their cell walls during Gram staining.
    • LPS is responsible for bacterial cell adhesion, resistance to phagocytosis, and acts as a molecular sieve.

    Cell Appendages and Structures

    • Flagella are long, whip-like appendages that rotate and allow bacteria to move (chemotaxis).
    • Pili are shorter, hair-like appendages that aid in bacterial adherence.
    • Capsules and slime layers are polysaccharide or protein coatings that surround some bacteria. These layers provide protection from phagocytosis and antibiotics and facilitate bacterial adherence.
    • Spores are dormant structures formed by some Gram-positive bacteria to survive adverse conditions. Gram-negative bacteria cannot form spores.

    Bacterial Biofilms

    • Biofilms are communities of bacteria that adhere to surfaces and produce a slimy matrix that protects the cells.
    • Biofilm formation is a major factor in the persistence of many infections, making them more resistant to treatment.
    • Examples of biofilm infections include Pseudomonas aeruginosa in cystic fibrosis patients and Staphylococcus epidermidis infections associated with intravascular catheters.
    • Biofilm infections are difficult to treat because antibiotics have reduced access to the embedded bacteria and are poorly effective at dissolving the biofilm matrix.

    Bacterial Growth

    • Bacteria typically divide by binary fission, where a single cell divides into two identical daughter cells.
    • This process allows bacteria to rapidly multiply under favorable conditions.
    • For growth, bacteria require energy, building blocks for cellular machinery, and appropriate environmental conditions.

    Energy and Growth Requirements

    • Bacteria derive energy from the enzymatic breakdown of organic substrates (carbohydrates, lipids, proteins) in a process called catabolism.
    • Growth requirements for bacteria include water, carbon, nitrogen, inorganic salts, iron, temperature, pH, and oxygen.
    • Some bacteria are aerobic, meaning they require oxygen for growth, while others are anaerobic, meaning they do not require oxygen and may even be killed by its presence.

    Bacterial Genetics

    • Bacterial genetics is clinically relevant because it plays a crucial role in the emergence of antibiotic-resistant pathogens and pathogens with enhanced virulence.
    • Some antibiotics specifically target bacterial genetic processes.
    • Advancements in genetic methods facilitate the early detection of pathogens, enabling more timely treatment of patients.

    Bacterial Genome

    • The bacterial genome includes all the genetic information carried by a bacterium, both on its chromosome and on plasmids.
    • The bacterial chromosome is a circular molecule of double-stranded DNA.
    • The bacterial chromosome contains approximately 4,000 genes and 5 million DNA base pairs.

    DNA Replication

    • DNA replication is the process by which a bacterium replicates its chromosome.
    • Replication involves multiple steps, including:
      • Initiation
      • Elongation
      • Proofreading
      • Termination
    • Key enzymes involved in DNA replication include helicase, DNA polymerase, ligase, and gyrase.

    Gene Expression

    • Gene expression is the process by which bacteria decode the genetic information contained in DNA to produce proteins.
    • Gene expression involves two key steps:
      • Transcription
      • Translation

    Transcription

    • In transcription, RNA polymerase binds to a promoter region upstream of a gene and unwinds the DNA double helix.
    • RNA polymerase then transcribes the DNA sequence into an RNA transcript, also known as messenger RNA (mRNA).

    Translation

    • In translation, mRNA is threaded through a ribosome. The sequence of codons in the mRNA is then decoded by transfer RNA (tRNA) molecules, which carry specific amino acids.
    • Ribosomes link the amino acids together in the order specified by the mRNA sequence, ultimately forming a protein.

    Plasmids

    • Plasmids are small, circular, extrachromosomal DNA molecules that can replicate independently of the bacterial chromosome.
    • Plasmids can be transferred between bacterial cells, spreading genetic information and potentially conferring phenotypic advantages to the host cell.
    • Plasmids with multiple antibiotic resistance genes are prevalent in hospital bacteria, increasing the difficulty of treating infections.

    DNA Mutation

    • Mutations are changes in the DNA sequence that can occur spontaneously or be induced by environmental factors, including exposure to mutagens.
    • Mutations are a driver of genetic diversity and can lead to changes in bacterial phenotypes, such as antibiotic resistance or altered virulence.
    • Mutations can be beneficial, harmful, or neutral, depending on the specific change in the DNA sequence and the environmental context.

    Antibiotic Resistance

    • Antibiotic overuse and misuse contribute to the emergence of antibiotic resistance.
    • Continued exposure to antibiotics selects for bacteria that have developed resistance genes, allowing them to survive and proliferate.
    • This selective pressure leads to the increasing prevalence of antibiotic-resistant strains, posing a significant challenge to public health.

    Prokaryotes vs Eukaryotes

    • Prokaryotes lack a nucleus, cell wall, and cell organelles
    • Eukaryotes have a nucleus, no cell wall, and have cell organelles including mitochondria, chloroplasts, and endoplasmic reticulum

    Microscopy

    • Bacterial shape is determined by microscopy
    • Microbial appearance assessed by colour (stain) and size

    Gram Stain

    • Most important differential staining method in microbiology
    • Gram-positive bacteria (staphylococci) have many peptidoglycan layers and appear purple after staining
    • Gram-negative bacteria (Escherichia coli) have one peptidoglycan layer and appear pink after staining

    Bacterial Cell Wall

    • Peptidoglycan, a unique polysaccharide, is the main component, providing shape and preventing lysis
    • Penicillin disrupts peptidoglycan synthesis
    • Many cell wall antigens are presented

    Gram-Positive Cell Envelope

    • Multi-layered peptidoglycan
    • Contains teichoic and lipotechoic acids that extend outwards
    • Involved in adherence and antigenicity

    Gram-Negative Cell Envelope

    • Contains an outer membrane made of phospholipid and lipopolysaccharide (LPS) bilayer
    • Offers a lipid layer, which contributes to the difference in Gram staining
    • Involved in bacterial cell adhesion and resistance to phagocytosis
    • Acts as a molecular sieve, controlling molecule access to the cell wall and cytoplasmic membrane

    Cell Appendages and Other Structures

    • Flagella extend from the surface, and are involved in bacterial motility and chemotaxis
    • Pili extend from the surface involved in bacterial adhesion
    • Capsules and Slime layers (polysaccharide or protein) surround some bacteria
    • Capsules and Slime layers offer protection from phagocytosis and antibiotics, and are involved in bacterial adherence
    • Spores are formed by some Gram-positive bacteria for protection against adverse conditions
    • Gram-negative bacteria cannot form spores

    Bacterial Biofilms

    • Many infections involve biofilms, such as Pseudomonas aeruginosa in cystic fibrosis patients and Staphylococcus epidermidis in intravascular catheter related infections
    • Form when bacteria adhere to surfaces and secrete a slime-like substance for anchoring
    • Biofilm infections are difficult to treat due to resistance to antimicrobial agents

    Bacterial Growth and Metabolism

    • Bacteria grow in liquid broths and on nutrient agar plates
    • Divide by binary fission, resulting in exponential multiplication
    • Growth requires energy, nutrients (water, carbon, nitrogen, inorganic salts, iron), appropriate temperature, pH, and oxygen

    Bacterial Genetics in Clinical Microbiology

    • Genetic variation processes drive the emergence of antibiotic resistant pathogens and increased virulence
    • Some antibiotics target genetic processes
    • Genetic methods facilitate early pathogen detection for faster treatment

    Bacterial Genome

    • Consists of all genetic information carried by the bacterium on both the chromosome and plasmids
    • Circular molecule of double-stranded DNA
    • Contains around 4,000 genes and 5 million DNA base pairs

    DNA Structure

    • Composed of nucleotides consisting of a base (guanine (G), adenine (A), cytosine (C), thymine (T)), sugar (deoxyribose), and one or more phosphate groups
    • Bases extend from the sugar-phosphate backbone forming a helix or ladder-like structure
    • Double-stranded DNA is wound around its axis to form the double helix

    Supercoiling

    • Topoisomerase enzyme (DNA gyrase) catalyses negative supercoiling of DNA
    • Relieves tension in the structure
    • Accommodates replication and transcription

    DNA Replication

    • Process of generating an identical set of genes during cell division
    • Semi-conservative process: one strand acts as a template for the second strand
    • Replication occurs in four steps: initiation, elongation, proofreading, and termination

    Initiation

    • Happens at the origin of replication (oriC) on the chromosome
    • Helicase enzyme unwinds dsDNA to expose ssDNA for replication
    • Replication occurs in both directions from the growing forks

    Elongation

    • DNA polymerase attaches to DNA, catalysing the formation of the new strand
    • Adds complementary bases to the parent strand
    • Works in one direction (5' to 3')
    • Leading strand: continuously copied in the 5' to 3' direction
    • Lagging strand: copied discontinuously in the 5' to 3' direction, forming Okazaki fragments
    • RNA primase lays down RNA primers on the lagging strand
    • DNA ligase links the Okazaki fragments

    Proofreading

    • DNA polymerase has proofreading activity, correcting errors during replication
    • Mistakes lead to mutations

    Termination

    • Results in two identical daughter helices

    DNA Replication Summary

    • Enzymes involved: helicase, DNA polymerase, ligase, and gyrase

    Gene Expression

    • Bacterial decoding of genetic information in DNA to produce proteins
    • Occurs in two steps: transcription and translation

    Gene Structure

    • Genes can occur individually or in groups (operons)

    Transcription

    • Initiated at the promoter region
    • RNA polymerase copies DNA to produce an RNA transcript (mRNA)

    Translation

    • mRNA is decoded by ribosomes and tRNA molecules
    • Specifying the exact sequence of amino acids in a protein

    Transcription Process

    • RNA polymerase binds to promoter regions and unwinds dsDNA in short segments
    • Transcribes DNA into RNA

    Translation Process

    • mRNA is threaded through the ribosome
    • tRNA molecules transport amino acids to the ribosome for peptide chain formation

    Plasmids

    • Small, circular, extrachromosomal DNA molecules
    • Replicate independently and can be transferred between cells
    • Confer phenotypic advantages to the host cells
    • Multiple antibiotic resistance genes on plasmids make bacteria resistant to a variety of antibiotics

    DNA Mutation

    • Changes in the nucleotide sequence of DNA
    • Can occur spontaneously or due to external factors like radiation
    • Can lead to antibiotic resistance, altered virulence, or changes in metabolic pathways

    Summary of Bacterial Gene Expression

    • DNA is transcribed into mRNA by RNA polymerase
    • mRNA is translated into proteins by ribosomes
    • tRNA molecules carry amino acids to the ribosome for protein synthesis

    Importance of Bacterial Genetics in Clinical Microbiology

    • Understanding bacterial genetics is vital for:
    • Targeting specific bacterial processes with antibiotics
    • Developing new therapeutic strategies and diagnostic techniques
    • Monitoring and controlling the emergence of antibiotic resistance
    • Understanding bacterial evolution and adaptation
    • Preventing the spread of infectious diseases

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    This quiz explores the differences between prokaryotic and eukaryotic cells, focusing on their structures and functions. It covers topics such as cell wall composition, microscopy techniques, and the significance of Gram staining in identifying bacteria. Test your understanding of microbial cell biology.

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