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Questions and Answers
Which of the following characteristics is NOT associated with the phylum Crenarchaeota?
Which of the following characteristics is NOT associated with the phylum Crenarchaeota?
What type of metabolism do Thaumarchaeota primarily exhibit?
What type of metabolism do Thaumarchaeota primarily exhibit?
Which genus is part of the Order Desulfurococcales within the Crenarchaeota?
Which genus is part of the Order Desulfurococcales within the Crenarchaeota?
Which of the following statements about Sulfolobus is TRUE?
Which of the following statements about Sulfolobus is TRUE?
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Where are the organisms of the phylum Euryarchaeota primarily found?
Where are the organisms of the phylum Euryarchaeota primarily found?
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What is the typical temperature range for members of the Crenarchaeota phylum?
What is the typical temperature range for members of the Crenarchaeota phylum?
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Which of the following metabolic processes can be used by sulfur-utilizing members of Crenarchaeota?
Which of the following metabolic processes can be used by sulfur-utilizing members of Crenarchaeota?
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What type of environments do Thaumarchaeota usually inhabit?
What type of environments do Thaumarchaeota usually inhabit?
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What type of lipid forms a monolayer in archaeal cell membranes?
What type of lipid forms a monolayer in archaeal cell membranes?
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Which factor contributes to the stability of archaeal monolayers?
Which factor contributes to the stability of archaeal monolayers?
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How does the chromosome size of some archaea compare to that of eubacteria?
How does the chromosome size of some archaea compare to that of eubacteria?
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Which electron carrier is primarily used by autotrophic archaea?
Which electron carrier is primarily used by autotrophic archaea?
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Which of the following pathways is characterized as reductive acetyl-CoA?
Which of the following pathways is characterized as reductive acetyl-CoA?
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Which of these archaea are known to utilize the 3-hydroxyproprionate/4-hydroxybutyrate pathway?
Which of these archaea are known to utilize the 3-hydroxyproprionate/4-hydroxybutyrate pathway?
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The G+C content in archaea can vary between which percentages?
The G+C content in archaea can vary between which percentages?
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Which group of archaea predominantly uses the dicarboxylate/4-hydroxybutyrate pathway?
Which group of archaea predominantly uses the dicarboxylate/4-hydroxybutyrate pathway?
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What shape is Escherichia coli?
What shape is Escherichia coli?
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What color does Bacillus subtilis' vegetative cells stain?
What color does Bacillus subtilis' vegetative cells stain?
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Which of the following characteristics are major morphological characteristics?
Which of the following characteristics are major morphological characteristics?
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Corynebacterium diphtheriae is described as which shape?
Corynebacterium diphtheriae is described as which shape?
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What does the staining behavior reveal about Staphylococcus aureus?
What does the staining behavior reveal about Staphylococcus aureus?
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What is the primary purpose of using stains in microbiology?
What is the primary purpose of using stains in microbiology?
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Which bacterium is known to cause anthrax?
Which bacterium is known to cause anthrax?
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What microscopy technique is used to study the ultrastructure of microbes?
What microscopy technique is used to study the ultrastructure of microbes?
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What type of metabolism do Nitrosomonas and their related genera exhibit?
What type of metabolism do Nitrosomonas and their related genera exhibit?
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What is the primary role of Thiobacillus denitrificans in its environment?
What is the primary role of Thiobacillus denitrificans in its environment?
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Which reaction describes the process of nitrification involving ammonium?
Which reaction describes the process of nitrification involving ammonium?
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What is the key electron donor for Thiobacillus?
What is the key electron donor for Thiobacillus?
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In which environment is Thiobacillus denitrificans predominantly found?
In which environment is Thiobacillus denitrificans predominantly found?
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Which of the following statements about Bordetella bronchiseptica is true?
Which of the following statements about Bordetella bronchiseptica is true?
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Which of the following best describes the term 'co-anammox'?
Which of the following best describes the term 'co-anammox'?
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What type of bacteria are classified as colorless sulfur bacteria?
What type of bacteria are classified as colorless sulfur bacteria?
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What is a distinctive feature of nonproteobacterial Gram-negative bacteria?
What is a distinctive feature of nonproteobacterial Gram-negative bacteria?
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In the anammox reaction, what role does nitrite play?
In the anammox reaction, what role does nitrite play?
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What is the primary function of the anammoxosome in nonproteobacterial Gram-negative bacteria?
What is the primary function of the anammoxosome in nonproteobacterial Gram-negative bacteria?
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Which of the following is true concerning the electron transport in the anammox reaction?
Which of the following is true concerning the electron transport in the anammox reaction?
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What components contribute to the formation of the proton motive force (PMF) in nonproteobacterial Gram-negative bacteria?
What components contribute to the formation of the proton motive force (PMF) in nonproteobacterial Gram-negative bacteria?
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What is the significance of hydrazine (N2H4) in the anammox reaction?
What is the significance of hydrazine (N2H4) in the anammox reaction?
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Which reaction represents the anabolic part of the anammox process?
Which reaction represents the anabolic part of the anammox process?
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Which genera are associated with nonproteobacterial Gram-negative bacteria?
Which genera are associated with nonproteobacterial Gram-negative bacteria?
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Study Notes
Morphological Characteristics
- Shape, size, and staining behaviour are key identifiers of microorganisms
- Gram staining classifies bacteria as gram-positive (purple) or gram-negative (pink)
- Light microscopes are useful for analyzing larger cellular structures
- Transmission electron microscopy (TEM) is used to analyze smaller structures, such as the morphology of organelles within cells
Escherichia coli
- Rod-shaped
- Gram-negative
- Commonly used in laboratory research
Staphylococcus aureus
- Coccus shaped
- Gram-positive
- Known to microbiologists due to strains used in laboratory research
Bacillus subtilis
- Gram-positive
- Green-stained spores indicate dormant cells
- Red-stained vegetative cells are actively growing
Bacillus anthracis
- Gram-positive
- Rod-shaped
- Causes anthrax
- Historically developed as a biological weapon
Corynebacterium diphtheria
- Gram-positive
- Club-shaped
- Causes diphtheria
Archaeal Cell Membranes
- Can form monolayers instead of bilayers
- The monolayer functions as a bilayer
- Monolayers are formed due to unique lipids in archaeal plasma membranes
- Two major archaeal lipids:
- Glycerol diether lipids: form a typical bilayer
- Diglycerol tetraether lipids: form a monolayer, providing greater stability and prevalent in thermophiles
Archaeal Genetics and Molecular Biology
- Some archaeal chromosomes are smaller than those of eubacteria
- The G+C content of archaeal DNA varies between 21% and 68%
- Archaeal ribosomes, mRNA, and RNA polymerases have distinctive properties
Archaeal Metabolism
- Most known autotrophic archaea thrive in anaerobic or low-oxygen conditions
- They use ferredoxin (Fd) instead of NADPH as electron carriers
- Three main carbon fixation pathways:
- Reductive acetyl-CoA pathway: used by methanogens for carbon fixation and energy production, and by other archaea for carbon fixation
- 3-hydroxyproprionate/4-hydroxybutyrate pathway: found in crenarchaeotes like Sulfolobales and Thaumarchaeota, operating under aerobic conditions
- Dicarboxylate/4-hydroxybutyrate pathway: present in crenarchaeotes like Thermoproteales and Desulfurococcales, includes reductive TCA steps
Archaeal Taxonomy
- Three main phyla based on rRNA data:
- Crenarchaeota
- Thaumarchaeota
- Euryarchaeota
Crenarchaeota
- All are thermophiles or hyperthermophiles
- Mostly strict anaerobes
- Acidophiles dependent on sulfur
- Sulfur acts as both an electron acceptor during anaerobic respiration and an electron donor in lithotrophs
- Found in geothermally heated water or sulfur-containing soil
Thaumarchaeota
- Found in soils and aquatic environments
- Mesophiles
- Ammonia oxidizers
Euryarchaeota
- Occupy lower temperature niches
- Examples: Methanogens, extreme halophiles, sulfate utilizers, and extreme thermophiles with sulfur-dependent metabolisms
Planctomycetes
- Anaerobic
- Morphologically unique bacteria with compartmentalized cells
- Cell wall lacks peptidoglycan
- Contain a large internal compartment – the intracytoplasmic membrane – separated from the plasma membrane by a ribosome-free region called the paryphoplasm
- Genera like Brociadia, Kuenenia, Scalindua, and Anammoxoglobus contain an additional compartment called the anammoxosome
- The anammoxosome is the site of the energy-yielding anammox reaction
The Anammox Reaction
- Anaerobic ammonia oxidation (anammox)
- Ammonium (NH4+) acts as an electron donor
- Nitrite (NO2-) acts as a terminal electron acceptor
- NO2- is reduced to nitrogen gas (N2)
- Hydrazine (N2H4) is a key intermediate, donating electrons to ferredoxin, initiating the electron shuttling that drives proton pumping across the anammoxosome membrane and produces a proton motive force (PMF)
Bordetella bronchiseptica
- Motile
- Coccobacillus shape
- Causes kennel cough in dogs
Nitrosomonadales
- Genera: Nitrosomonas, Nitrosococcus, and Nitrospira
- Chemoautotrophs
- Nitrification: oxidise nitrate to nitrite (AMO and HAO enzymes)
- When present together in soil, Nitrosomonas and Nitrobacter convert ammonia into nitrate through nitrification:
- NH4+ → NO2- → NO3-
- Co-anammox describes the direct conversion of NH4+ to NO3-, which doesn't occur in this case due to the separate reactions
Hydrogenophilales
- Genus: Thiobacillus
- Colourless (“colourless sulfur bacteria")
- Chemolithotrophs
- Not photosynthetic
- Electron donor: Reduced inorganic sulfur compounds
- Electron acceptor: O2
Thiobacillus denitrificans
- Found in acid mine drainage
- Denitrification: reduces nitrate to nitrogen gas
- Electron donors: Hydrogen sulfide (H2S), thiosulphate (S2O32-), or ferrous iron (Fe2+)
- Electron acceptor: Oxygen or nitrate
- Plays a role in biomining by oxidizing metals and solubilizing sulfide ores, facilitating the extraction of precious metals.
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Description
This quiz focuses on the morphological characteristics of various microorganisms, including shape, size, and staining behaviors. It covers key examples such as Escherichia coli, Staphylococcus aureus, and Bacillus anthracis, emphasizing their gram classification and significance in laboratory research.