Microbial Identification Techniques

Choose a study mode

Play Quiz
Study Flashcards
Spaced Repetition
Chat to Lesson

Podcast

Play an AI-generated podcast conversation about this lesson

Questions and Answers

What is the primary purpose of microarrays in medical diagnostics?

  • To detect a wide range of infectious agents (correct)
  • To replace traditional laboratory tests
  • To isolate and purify nucleic acids
  • To provide treatment options for patients

Which step involves the matching of gene sequences to the chip?

  • Detection
  • Result Validation
  • Sample Preparation
  • Hybridization (correct)

How are patient samples processed before they interact with microarray chips?

  • They are filtered to remove impurities
  • They undergo a drying process
  • They are immediately analyzed by the computer program
  • They are incubated with labeled gene sequences (correct)

What impact do diagnostic tests have on health care decisions?

<p>They influence 70% of health care decisions (B)</p> Signup and view all the answers

What percentage of US health care costs is spent on diagnostic tests?

<p>2% (C)</p> Signup and view all the answers

What is the primary purpose of Polymerase Chain Reaction (PCR) in diagnosing microorganisms?

<p>To produce numerous copies of DNA or RNA molecules (D)</p> Signup and view all the answers

Which method utilizes random primers to identify specific microbes from a mixed population?

<p>Random Amplified Polymorphic DNA (RAPD) (A)</p> Signup and view all the answers

How does Hybridization identify specific microbes?

<p>By analyzing genetic material using complementary probes (C)</p> Signup and view all the answers

What is the role of Fluorescent in situ Hybridization (FISH) in microbial identification?

<p>To locate and identify specific microbes using fluorescent probes (B)</p> Signup and view all the answers

What does ribotyping analyze for microbial identification?

<p>16s ribosomal RNA (rRNA) (B)</p> Signup and view all the answers

What is the significance of specificity in immunological tests?

<p>The ability to focus on a specific antibody or antigen (C)</p> Signup and view all the answers

Which biological fluids can modern serological tests analyze?

<p>Urine, cerebrospinal fluid, whole tissues, and saliva (B)</p> Signup and view all the answers

What is the main feature that allows modern serological tests to determine unknowns?

<p>Using knowns to analyze unknowns (B)</p> Signup and view all the answers

What is the primary difference between agglutination and precipitation reactions?

<p>Agglutination results in visible clumping, whereas precipitation forms cloudy zones. (C)</p> Signup and view all the answers

What type of antigens are primarily involved in agglutination reactions?

<p>Whole cells like RBCs or bacteria. (B)</p> Signup and view all the answers

What is the purpose of the Western blot test in the context of HIV detection?

<p>To detect the presence of HIV antibodies in serum. (D)</p> Signup and view all the answers

Which method is used to visualize the antigen-antibody reactions in a Western blot?

<p>Applying a fluorescent or luminescent labeled antibody. (B)</p> Signup and view all the answers

How are titers determined in serological testing?

<p>By serially diluting serum and observing agglutination. (A)</p> Signup and view all the answers

What indicates a positive result in the RPR test?

<p>Visible black clumps from agglutination. (B)</p> Signup and view all the answers

In the context of immunodiffusion, what is the result of double diffusion (Ouchterlony)?

<p>Formation of a line of identity when antigen and antibody are identical. (A)</p> Signup and view all the answers

What characteristic distinguishes precipitation reactions from agglutination reactions?

<p>Precipitation involves soluble antigens forming insoluble complexes. (C)</p> Signup and view all the answers

What is a critical feature of the Western blot test that contributes to its high accuracy?

<p>It separates proteins by charge before detection. (C)</p> Signup and view all the answers

Which of the following is NOT typically done during a precipitation reaction?

<p>Measuring visible clumping in a test tube. (C)</p> Signup and view all the answers

What is the primary use of Western blotting in immunological testing?

<p>To verify the presence of microbial-specific antigens (C)</p> Signup and view all the answers

In radioimmunoassay (RIA), what is primarily measured to determine the amount of antigen or antibody?

<p>The level of radioactivity (B)</p> Signup and view all the answers

What does a direct ELISA determine?

<p>The presence of an unknown antigen using known antibody (B)</p> Signup and view all the answers

How are antigen-antibody complexes visualized in immunofluorescence testing?

<p>With the help of fluorescent microscopy (C)</p> Signup and view all the answers

What type of sample is used in the indirect ELISA method?

<p>Patient serum (C)</p> Signup and view all the answers

What kind of reaction does the tuberculin test elicit in vivo?

<p>Lesion formation at the injection site (A)</p> Signup and view all the answers

Which component is NOT part of the ELISA testing method?

<p>Isotope counter (B)</p> Signup and view all the answers

What does the term 'immunofluorescence' refer to?

<p>The use of fluorescent dyes for antibody detection (A)</p> Signup and view all the answers

What is the significance of using a verification test like Western blotting for HIV screening?

<p>It verifies results from less specific tests (D)</p> Signup and view all the answers

What innovation drives the breakthrough methodologies in immunological testing?

<p>Genetics, physics, and information science (C)</p> Signup and view all the answers

Which laboratory technique is primarily used for identifying predominant biochemical reactions in bacteria?

<p>Biochemical testing (C)</p> Signup and view all the answers

What is the purpose of differential media in the isolation of pathogens?

<p>To identify definitive characteristics and fermentation patterns (A)</p> Signup and view all the answers

Which of the following specimens requires a sterile transport swab for collection?

<p>Blood culture (B)</p> Signup and view all the answers

Which of the following biochemical tests assesses the ability of bacteria to ferment carbohydrates?

<p>Carbohydrate fermentation test (D)</p> Signup and view all the answers

In diagnosing infections like Haemophilus influenzae, what molecular technique is commonly employed?

<p>Nucleic acid amplification (PCR) (A)</p> Signup and view all the answers

What is the initial step in the laboratory techniques used for pathogen identification?

<p>Analyzing patient signs and symptoms (A)</p> Signup and view all the answers

Which characterization is NOT a part of evaluating a pure culture?

<p>Serological reaction (D)</p> Signup and view all the answers

What is the main outcome of a phage typing test?

<p>Identification of bacterial species (B)</p> Signup and view all the answers

Which of the following isolates is best tested using Salmonella/Shigella agar?

<p>Salmonella enterica (B)</p> Signup and view all the answers

Which test would likely result in a color change to indicate a metabolic reaction?

<p>Biochemical test (B)</p> Signup and view all the answers

Flashcards

PCR (Polymerase Chain Reaction)

A method to quickly copy many DNA or RNA molecules, making tiny amounts detectable.

RAPD (Random Amplified Polymorphic DNA)

A technique using random primers to identify unknown microbes from a sample with many different microbes.

Hybridization

Using probes to match up with specific genetic material to identify microbes.

FISH (Fluorescent in situ Hybridization)

A method that uses fluorescent probes to find and identify microbes in intact cells.

Signup and view all the flashcards

Pulse-Field Gel Electrophoresis

Separates large DNA fragments based on size using changing electric fields.

Signup and view all the flashcards

Ribotyping (rRNA Analysis)

Comparing 16s rRNA to identify microbes, showing evolutionary relationships.

Signup and view all the flashcards

Specificity (in testing)

A test only reacting with its target antibody or antigen, not others.

Signup and view all the flashcards

Sensitivity (in testing)

A test's ability to detect small amounts of antibodies or antigens.

Signup and view all the flashcards

Microarray

A chip containing gene sequences from thousands of infectious agents used to detect diseases.

Signup and view all the flashcards

Sample Preparation

The process of isolating patient samples and mixing them with labeled genes.

Signup and view all the flashcards

Detection

Using a computer to identify the bound gene sequences on the chip.

Signup and view all the flashcards

Patient Outcomes

Improved health results from using new diagnostic tests.

Signup and view all the flashcards

Agglutination

Antigen-antibody reaction where whole cells, like bacteria or red blood cells, clump together.

Signup and view all the flashcards

Precipitation

Antigen-antibody reaction where soluble molecules form insoluble complexes that precipitate out of solution.

Signup and view all the flashcards

Western Blot

A test that separates proteins by size using electrophoresis, then detects specific proteins using antibodies.

Signup and view all the flashcards

RPR (Rapid Plasma Reagin)

A test that detects syphilis antibodies in plasma by observing agglutination of lipid particles.

Signup and view all the flashcards

Ouchterlony Double Diffusion

A method to identify antigens and antibodies by observing precipitation bands formed when they diffuse towards each other in agar gel.

Signup and view all the flashcards

Line of Identity (Ouchterlony)

A single precipitation band formed when two antigens share the same epitope, indicating they are identical.

Signup and view all the flashcards

Line of Non-Identity (Ouchterlony)

Two separate precipitation bands formed when two antigens have different epitopes, indicating they are distinct.

Signup and view all the flashcards

Line of Partial Identity (Ouchterlony)

One precipitation band with a spur formed when two antigens share some but not all epitopes, indicating they are partially related.

Signup and view all the flashcards

Titer

The highest dilution of serum that still shows a positive agglutination reaction, indicating the concentration of antibodies.

Signup and view all the flashcards

Precipitation Reactions

Antigen-antibody reactions where soluble antigens become insoluble, often observed as cloudy zones in test tubes.

Signup and view all the flashcards

Phenotypic Identification

Identifying a pathogen based on its physical characteristics like shape, size, and how it interacts with its environment.

Signup and view all the flashcards

Immunologic Identification

Identifying a pathogen by detecting specific antibodies or antigens in the patient's blood using serological tests.

Signup and view all the flashcards

Genetic Identification

Identifying a pathogen by analyzing its unique genetic material, like DNA or RNA.

Signup and view all the flashcards

Differential Media

A type of growth medium that allows you to distinguish between different types of bacteria based on their growth characteristics.

Signup and view all the flashcards

Pure Culture

A sample containing only one type of bacteria, important for accurate identification and testing.

Signup and view all the flashcards

Biochemical Testing

Testing the metabolic activities of a bacterium by analyzing its ability to utilize specific nutrients and produce certain byproducts.

Signup and view all the flashcards

Carbohydrate Fermentation

Testing a bacterium's ability to break down sugars (carbohydrates) for energy, often producing acid or gas as byproducts.

Signup and view all the flashcards

Phage Typing

A method for identifying bacteria based on their sensitivity to specific viruses called bacteriophages.

Signup and view all the flashcards

Salmonella/Shigella (SS) Agar

A selective and differential medium specifically designed to isolate and identify Salmonella and Shigella bacteria.

Signup and view all the flashcards

Nucleic Acid Amplification (PCR)

A technique used to rapidly amplify specific DNA sequences, making it easier to detect and identify pathogens.

Signup and view all the flashcards

Radioimmunoassay (RIA)

A technique used to measure very small amounts of substances in a sample by using radioactive isotopes to label antibodies or antigens. It involves adding known amounts of radioactively labeled antibodies or antigens to a sample and then measuring the amount of radioactivity present. This method is highly sensitive and used to detect specific antigens or antibodies in biological samples.

Signup and view all the flashcards

Immunofluorescence Testing

A method used to detect antigens or antibodies in a sample by using antibodies labeled with a fluorescent dye. It involves attaching fluorescent dyes to antibodies and then exposing them to a sample. If the antibodies bind to their target, they will fluoresce under a microscope, revealing the presence of the antigen or antibody.

Signup and view all the flashcards

What is Direct ELISA?

This test involves a well-plate with known antibodies attached. This well reacts with unknown antigens from the sample. If the antigen is present, it binds to the antibody and the enzyme-linked antibody is added, leading to a color change indicating a positive result.

Signup and view all the flashcards

Indirect ELISA

A test used to detect antibodies in a sample by using a known antigen and an enzyme-linked secondary antibody. This test is used to identify antibodies in a patient's serum. It involves adding known antigens to a well. If the patient has antibodies specific to the antigen, they will bind to the antigen. Then an enzyme-linked secondary antibody specific to the patient's antibodies is added, which binds to the Fc region of the patient's antibody. This leads to a color change indicating a positive result.

Signup and view all the flashcards

What is the Tuberculin Test?

This in vivo test involves injecting a small amount of purified protein derivative (PPD) from Mycobacterium tuberculosis into the skin. A red, raised, thickened lesion appearing within 48-72 hours signifies prior exposure to tuberculosis.

Signup and view all the flashcards

Breakthrough Immunological Testing

New diagnostic techniques are emerging, utilizing advancements in genetics, physics, and information science.

Signup and view all the flashcards

What does a positive result in an Immunofluorescence test mean?

A positive result in immunofluorescence test means the antigen or antibody is present and the fluorescently labeled antibody binds to it, causing it to fluoresce in the microscope.

Signup and view all the flashcards

Study Notes

Miscellaneous Tests

  • Makes it possible to identify a microbe by analyzing segments of its genetic material
  • Probes: small fragments of DNA or RNA known to be complementary to specific sequences in the nucleic acid from a microbe
  • Base pairing of the probe to the nucleic acid can provide evidence of the microbe's identity

Hybridisation: Probing for Identity

  • Application of fluorescently labeled probes to intact cells within a patient specimen or environmental sample
  • Used to locate "glowing cells" and determine the identity of a specific microbe
  • Often used to confirm a diagnosis or identify the components of a biofilm

Ribotyping: rRNA Analysis

  • One of the most viable indicators of evolutionary relatedness is comparison of 16S ribosomal RNA
  • Component of the 30S subunit of bacterial and archaeal ribosomes
  • Highly conserved across species and evolutionary time
  • Ribotyping is perfectly suited for bacterial identification and diagnosis of infection
  • rRNA is isolated, sequenced, and analyzed from cultured cells

Immunological Methods

  • In vitro diagnostic testing of serum
  • Based on the concept that antibodies have extreme specificity for antigens
  • Visualizing this interaction provides a powerful tool for detecting, identifying, and quantifying antibodies or antigens
  • An unknown antibody can be detected using a known antigen or an unknown antigen can be detected using a known antibody
  • Modern serological methods can test:
    • Urine
    • Cerebrospinal fluid
    • Whole tissues
    • Saliva

General Features of Immune Testing

    1. Specificity:
    • The property of a test to focus on only a certain antibody or antigen
    • Does not react with unrelated or distantly related antigens.
    1. Sensitivity:
    • The detection of even minute quantities of antibodies or antigens in a specimen
    • Reflects the degree to which a test will detect every positive person.

Polymerase chain reaction (PCR)

  • Used in many nucleic acid tests
  • Results in the production of numerous copies of DNA or RNA molecules within hours
  • Can amplify minute quantities of nucleic acids in a sample, greatly improving the sensitivity of diagnostic tests
  • Can be performed on bacteria, viruses, protozoa, and fungi

Random amplified polymorphic DNA (RAPD)

  • Used in cases where the microbial populations are relatively unknown
  • Employs primers of random sequences in an attempt to pick a microbial needle out of a haystack

Pulse-Field Gel Electrophoresis

  • Since the DNA fragments are large, PFGE requires long changes ("pulses") in the direction of the electrical field to tease them apart

Microarrays

  • Absorbent plates or "chips" that contain gene sequences from thousands of infectious agents
  • Selected based on the syndrome being investigated
  • Can be made to contain bacterial, viral, and fungal genes in a single test
  • Patient samples or nucleic acids isolated from them are incubated with labeled gene sequences
  • Matching sequences hybridize to the chip
  • The fluorescent label is detected by a computer program

Studying That Suits You

Use AI to generate personalized quizzes and flashcards to suit your learning preferences.

Quiz Team

More Like This

Use Quizgecko on...
Browser
Browser