Microbial Evolution - Applied Aspects

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Questions and Answers

Which phenomenon is likely to cause the most significant changes in the immune response?

  • Antigenic drift
  • Antibody enhancement
  • Genetic mutation
  • Antigenic shift (correct)

What was the estimated global death toll during the 1918 pandemic?

  • ~250k
  • ~50 million (correct)
  • ~1 million
  • ~675k

What is the primary reason for needing a seasonal flu shot?

  • To ensure immunity against all strains
  • To combat antigenic shift
  • To prevent bird flu mutations
  • To address antigenic drift (correct)

During which pandemic did H1N1 cause widespread illness due to reassortment events?

<p>2009 Pandemic (A)</p> Signup and view all the answers

How many deaths did the 1968 pandemic approximately lead to worldwide?

<p>~1 million (C)</p> Signup and view all the answers

What does HPAI stand for in the context of bird flu?

<p>Highly Pathogenic Avian Influenza (A)</p> Signup and view all the answers

When was the first HPAI A(H5N1) bird flu outbreak reported in dairy cows?

<p>March 25, 2024 (B)</p> Signup and view all the answers

What significant development regarding H5N1 bird flu was reported in Oregon?

<p>It infected a pig (D)</p> Signup and view all the answers

What is the primary reason swine are considered efficient influenza mixing bowls?

<p>They can exchange genetic materials between different influenza viruses. (A)</p> Signup and view all the answers

What is a significant consequence of the rapid evolution of HIV?

<p>Emergence of drug-resistant strains. (A)</p> Signup and view all the answers

How many groups of HIV have arisen from simian immunodeficiency viruses (SIV) jumping to humans?

<p>At least 5 different groups. (A)</p> Signup and view all the answers

Why has the development of an effective vaccine for HIV been challenging?

<p>The rapid mutation and recombination of the virus. (C)</p> Signup and view all the answers

Which of the following statements about SARS-CoV-2 is accurate?

<p>It has a genome size of approximately 30 kilobases. (A)</p> Signup and view all the answers

What is the host range specificity of HIV?

<p>Specific to primates. (A)</p> Signup and view all the answers

What contributes to the evolution of viruses like HIV in a host?

<p>Rapid recombination between different variants. (D)</p> Signup and view all the answers

What characterizes the viral structure of coronaviruses, including SARS-CoV-2?

<p>Enveloped virus. (D)</p> Signup and view all the answers

What is one method by which antibiotic resistance can arise in bacteria?

<p>Mutation of existing genes (C)</p> Signup and view all the answers

Which of the following is true about Methicillin Resistant Staphylococcus aureus (MRSA)?

<p>MRSA is defined by the presence of mecA gene (B)</p> Signup and view all the answers

What is a major contributor to the development of antibiotic resistance in agricultural settings?

<p>Widespread use of antibiotics in livestock production (B)</p> Signup and view all the answers

How do bacteria acquire new resistance genes through horizontal gene transfer?

<p>By acquiring genes coding for enzymes that inactivate antibiotics (B)</p> Signup and view all the answers

What best describes antigenic drift in the context of viral evolution?

<p>Mutation resulting in minor changes to viral proteins (B)</p> Signup and view all the answers

What role does the SCCmec gene cassette play in MRSA?

<p>It contains mecA, which provides resistance to beta-lactam antibiotics (D)</p> Signup and view all the answers

What is the primary difference between antigenic drift and reassortment in viral evolution?

<p>Antigenic drift involves minor mutations, while reassortment involves genetic recombination (A)</p> Signup and view all the answers

What is the main consequence of the high frequency of antibiotic use in the U.S.?

<p>Increase in bacterial resistance to treatment (B)</p> Signup and view all the answers

Flashcards

Evolution

The process of change in the genetic makeup of a population over time, driven by factors like natural selection and mutation.

Long Term Experimental Evolution of E. coli

A long-term study using E. coli bacteria grown in a simple glucose environment to observe evolutionary changes in the bacteria.

Antibiotic Resistance

The ability of bacteria to develop resistance to antibiotics, making them harder to treat.

Horizontal Gene Transfer

A mechanism for antibiotic resistance where bacteria acquire resistance genes through the transfer of genetic material.

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MRSA

A type of bacteria that has developed resistance to methicillin, a common antibiotic.

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SCCmec

A genetic element found in some Staphylococcus aureus strains that confers resistance to methicillin and other antibiotics.

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Influenza A

A viral infection that causes the flu. Classified by two proteins: Hemagglutinin (H) and Neuraminidase (N).

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Antigenic Drift

Changes in the influenza A virus, causing minor variations in the H and N proteins, responsible for seasonal flu outbreaks.

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H5N1

A type of influenza virus that is highly pathogenic and can infect both birds and humans. It is characterized by its ability to spread rapidly and cause severe illness.

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Swine Influenza Virus

A type of virus that can infect pigs and is capable of exchanging genetic material with both avian and human influenza viruses, creating the potential for new and dangerous strains.

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HIV

The human immunodeficiency virus, a type of retrovirus that attacks the immune system, causing a progressive decline in immune function and eventually leading to AIDS (Acquired Immunodeficiency Syndrome).

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SIV (Simian Immunodeficiency Virus)

A group of retroviruses that infect primates, including chimpanzees and monkeys. They are considered to be the origin of HIV.

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Antigenic Variation

The ability of a virus to change its surface proteins, making it difficult for the immune system to recognize and target it. This is a common strategy viruses use to evade the immune system, leading to recurring infections.

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Viral Recombination

The process by which viruses exchange genetic material, leading to the creation of new and potentially more virulent strains. This is particularly concerning in virus evolution as it can lead to unpredictable and potentially devastating consequences.

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Drug Resistance

The process by which viruses evolve and become resistant to antiviral drugs, making treatment difficult or ineffective. This is a major challenge in managing viral infections, especially HIV.

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SARS-CoV-2

A type of coronavirus that causes the respiratory illness COVID-19, characterized by fever, cough, and shortness of breath. It is transmitted through respiratory droplets and can lead to serious complications.

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Seasonal Flu Vaccine

The seasonal flu vaccine is needed annually because influenza viruses constantly evolve through antigenic drift. This leads to changes in hemagglutinin and neuraminidase, making the virus less recognizable to the immune system and minimizing prior vaccine protection.

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1918 Spanish Flu Pandemic

The 1918 Spanish Flu pandemic, which killed millions worldwide, was attributed to a novel H1N1 strain, likely arising from antigenic shift, leading to a severe pandemic.

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2009 H1N1 Pandemic

The 2009 H1N1 pandemic was caused by a new reassortment strain of influenza, a subtype of H1N1, that emerged through antigenic shift, leading to widespread infection and a global pandemic.

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Anti-viral Drugs and Flu

Anti-viral drugs are used to treat influenza infections, targeting specific viral enzymes or processes. Their effectiveness can be affected by the emergence of drug-resistant strains through mutations.

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H5N1 Bird Flu

The avian influenza H5N1 is a highly pathogenic strain of bird flu that has been detected in a growing number of mammals, including pigs and dairy cows. This is concerning as cross-species transmission could lead to a human pandemic.

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Zoonotic Potential of H5N1

The spread of avian influenza H5N1 to mammals poses a significant threat to public health since a zoonotic spread could lead to a novel strain capable of efficiently infecting humans. This could potentially trigger a new pandemic, as seen with the 2009 H1N1 outbreak.

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Study Notes

Microbial Evolution - Applied Aspects

  • Microbial evolution influences antibiotic resistance and viral evolution.
  • Antibiotics are used extensively in the US, with a significant portion used in agricultural animal production.
  • Approximately 70% of hospital-acquired infections are caused by resistant bacteria.
  • Changes in gene frequency in bacteria are due to selection and genetic drift.
  • Antibiotic resistance development includes spontaneous mutation modifying genes, altering antibiotic targets, and changing cell permeability. Horizontal gene transfer acquires resistance genes for enzymes inactivating antibiotics and compensating for losses in protein function.

Evolution in Action

  • E. coli, grown in minimal glucose medium, demonstrate adaptive evolution.
  • Initial mutants had low citrate use, but fitness increased over multiple generations, showing how evolution can improve fitness.
  • Rhodobacter capsulatus can use malate for growth either through anoxygenic photosynthesis or fermentation.
  • Mutants selected in the dark show changes in bacteriochlorophyll that are lost in light.

Evolution of Antibiotic Resistance

  • The graphic shows antibiotic usage and resistance increasing over time.
  • A notable increase in the usage of antibiotics occurred within a given period.
  • Significant amounts of antibiotics are used, contributing to the development of antibiotic resistance.
  • The evolution of antibiotic resistance is a growing concern due to the frequency of acquired resistance in bacteria.

Viral Evolution - Influenza A

  • Influenza A viruses are categorized by H (hemagglutinin) and N (neuraminidase).
  • Variants arise due to immune reactions, with varying types of H and N in human populations.
  • Antigenic drift results from mutations, typically 2-3 amino acid replacements, leading to seasonal flu variations. Reassortment leads to a complete shift, potentially causing a pandemic.
  • Pandemic fluctuations occurred in 1918, 1957, and 1968. Seasonal flu outbreaks are common and significant.

Viral Evolution - HIV

  • HIV is a ssRNA (+) virus affecting primates.
  • HIV-1 is a chimpanzee-derived origin, and HIV-2 is a monkey origin.
  • The virus exhibits high mutation rates and variation, making vaccine development challenging, causing immune system evasion and promoting drug resistance.
  • HIV has jumped to humans at least twice, leading to multiple groups and variations.

Genomic Analysis of SARS-CoV-2

  • No evidence for reassortment of SARS-CoV-2 with other viruses.
  • SARS-CoV-2 has a proofreading enzyme, hence the slower rate of mutations relative to flu.
  • The large majority of strains are remarkably similar, with less than 53 substitutions per genome.
  • Spike Protein mutations can affect receptor affinity and infectivity.

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