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What phenomenon allows microorganisms to adapt their surface properties in response to environmental changes?
What phenomenon allows microorganisms to adapt their surface properties in response to environmental changes?
Which type of materials are commonly used for constructing medical implants that can facilitate microbial adhesion?
Which type of materials are commonly used for constructing medical implants that can facilitate microbial adhesion?
What is a key benefit of using natural macromolecules in tissue engineering?
What is a key benefit of using natural macromolecules in tissue engineering?
What crucial step indicates the beginning of infection by pathogens?
What crucial step indicates the beginning of infection by pathogens?
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What form of genetic material facilitates the crown gall disease in plants caused by A. tumefaciens?
What form of genetic material facilitates the crown gall disease in plants caused by A. tumefaciens?
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Which of the following microbial structures exhibits strong resistance to drugs and antibiotics?
Which of the following microbial structures exhibits strong resistance to drugs and antibiotics?
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Which type of molecule facilitates the specific adherence mechanism in pathogens?
Which type of molecule facilitates the specific adherence mechanism in pathogens?
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What is the primary result of the interaction between Mycobacterium tuberculosis and host cells?
What is the primary result of the interaction between Mycobacterium tuberculosis and host cells?
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What characteristic distinguishes biofilm bacteria from planktonic bacteria?
What characteristic distinguishes biofilm bacteria from planktonic bacteria?
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What type of bacteria is primarily responsible for acute infections?
What type of bacteria is primarily responsible for acute infections?
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How are chronic infections typically characterized?
How are chronic infections typically characterized?
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What is a key aspect of germ theory in medicine?
What is a key aspect of germ theory in medicine?
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What did early germ theories sometimes refer to before 1850?
What did early germ theories sometimes refer to before 1850?
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Who is considered the 'Father of Microbiology'?
Who is considered the 'Father of Microbiology'?
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What is the nature of biofilm formation in bacteria?
What is the nature of biofilm formation in bacteria?
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What distinguishes biofilm lifestyle from planktonic lifestyle in terms of antibiotic treatment?
What distinguishes biofilm lifestyle from planktonic lifestyle in terms of antibiotic treatment?
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What is microbial intelligence primarily characterized by?
What is microbial intelligence primarily characterized by?
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Which of the following is a consequence of quorum sensing in bacteria?
Which of the following is a consequence of quorum sensing in bacteria?
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How do bacteria respond to antibiotic stress?
How do bacteria respond to antibiotic stress?
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What strategy do some bacteria use to avoid the immune system?
What strategy do some bacteria use to avoid the immune system?
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Which factor does NOT directly influence the pathogenicity of bacteria?
Which factor does NOT directly influence the pathogenicity of bacteria?
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What role do plasmids play in pathogenic bacteria?
What role do plasmids play in pathogenic bacteria?
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What defines a pathogen?
What defines a pathogen?
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What is a key aspect of bacterial behavior under nutritional stress?
What is a key aspect of bacterial behavior under nutritional stress?
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Which opportunistic bacterium is known for using quorum sensing to form biofilms?
Which opportunistic bacterium is known for using quorum sensing to form biofilms?
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Which factor is NOT included in the types of pathogenesis?
Which factor is NOT included in the types of pathogenesis?
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What is the term used to describe how severe disease symptoms are?
What is the term used to describe how severe disease symptoms are?
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Which of the following statements regarding fever is correct?
Which of the following statements regarding fever is correct?
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What is the main component of pus produced during a bacterial infection?
What is the main component of pus produced during a bacterial infection?
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Which of the following is a characteristic of malignancy?
Which of the following is a characteristic of malignancy?
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How do microbial pathogens potentially influence cancer cell development?
How do microbial pathogens potentially influence cancer cell development?
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Which type of organism is not considered a pathogen?
Which type of organism is not considered a pathogen?
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What does a virusoid genome do?
What does a virusoid genome do?
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Which virus family do the helper viruses associated with virusoids belong to?
Which virus family do the helper viruses associated with virusoids belong to?
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What happens to virusoids once the helper virus enters a host cell?
What happens to virusoids once the helper virus enters a host cell?
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How do satellite RNAs differ from virusoids?
How do satellite RNAs differ from virusoids?
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What is a consequence of small RNA production from Y-satellite RNA in relation to chlorophyll biosynthesis?
What is a consequence of small RNA production from Y-satellite RNA in relation to chlorophyll biosynthesis?
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What type of RNA or DNA might satellite genomes represent?
What type of RNA or DNA might satellite genomes represent?
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What role do giant DNA viruses play concerning smaller viruses?
What role do giant DNA viruses play concerning smaller viruses?
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What characterizes prions?
What characterizes prions?
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What is the primary function of lipoteichoic acids in bacterial membranes?
What is the primary function of lipoteichoic acids in bacterial membranes?
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What role do pili play in bacterial infections?
What role do pili play in bacterial infections?
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Which of the following statements about bacterial capsules is true?
Which of the following statements about bacterial capsules is true?
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What is the consequence of Neisseria gonorrhoeae lacking pili?
What is the consequence of Neisseria gonorrhoeae lacking pili?
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How does the smooth nature of a bacterial capsule contribute to its virulence?
How does the smooth nature of a bacterial capsule contribute to its virulence?
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Which of the following is NOT a function of the bacterial capsule?
Which of the following is NOT a function of the bacterial capsule?
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What feature of type I and type II pili enhances their role in bacterial adhesion?
What feature of type I and type II pili enhances their role in bacterial adhesion?
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What is the consequence of having a polysaccharide capsule on a pathogenic bacteria?
What is the consequence of having a polysaccharide capsule on a pathogenic bacteria?
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Study Notes
Microbial Pathogenicity
- Microorganisms studied include bacteria, mycoplasma, rickettsiae, chlamydia, viruses, and fungi.
- Disease transmission is covered.
- Pathogenicity of viral diseases, prions, bacteria, mycoplasmas and fungi are discussed.
- Microbial disease aetiology is described.
- The interaction between microorganisms and animal or plant hosts is examined
- Host defense mechanisms are explored.
- Pathogenicity of bacterial pathogens of plants and their control are discussed.
- Pathogens are anything that can produce disease, also referred to as an infectious agent or simply as a germ.
- Infectious diseases are caused by pathogens, this includes bacteria, fungi, protozoa, worms, viruses, virus-like agents, and infectious proteins called prions.
- A pathogen is defined as an organism causing disease to its host, with the severity of the symptoms referred to as virulence.
- The signs and symptoms of infection may be caused directly by the pathogen or the host’s responses.
- Some hallmarks of bacterial infection include swelling and redness at the site of infection and pus (dead white blood cells), a direct result of the immune system cells attempting to destroy invading microorganisms.
- Fever is a defensive response to microorganisms; an increase in body temperature can inhibit the growth of some microorganisms.
- Pathogenesis is the process by which a disease or disorder develops, including factors that contribute to the onset, progression, and maintenance of the disease or disorder. This includes microbial infection, inflammation, tissue breakdown, and malignancy.
- Malignancy refers to the presence of cancerous cells capable of spreading (metastasis) or invading nearby tissues (locally) and destroying them.
- Cancer cells often form their own microenvironment around a tumor to support its growth; any microbes within or near the tumor have the potential to alter the microenvironment in ways that may affect cancer cell development.
- Microbes, such as toxins released due to an activated immune system, can damage host cell DNA through various mechanisms and epigenetic changes.
- Microbial proliferation and biofilm formation can alter the local environment.
- Research indicates that cancer cells and microbes can even share resources through symbiotic association, sharing immune system protection and growth factors, among other factors.
- Several microbial species, including viruses, bacteria, fungi are classified as human carcinogens by international agency or research on cancer, or the national toxicology program (IARCNTP).
- Viruses are the most common pathogens associated with cancers, including anal, cervical, hepatocellular cancers (liver), etc. About 1.5 million global cancer cases are thought to be caused by tumor viruses.
- Examples of viruses associated with tumor development include Epstein Barr Virus, Human Papillomavirus, Hepatitis B virus, and Hepatitis C virus.
- The mechanism of carcinogenesis differs depending on the type of virus. For example, HBV can fuse with the human genome and grow in liver cells, increasing carcinogenic activity and causing liver cancer.
- Several species of bacteria have been shown to reside inside tumor cells and may influence the progression of cancer.
- Increased activity of Helicobacter pylori is directly associated with stomach cancer, considered the fifth most common cancer worldwide. It does so by producing cancer-causing proteins called oncoproteins that change the cell characteristics of the stomach.
- Chlamydia trachomatis and other sexually transmitted bacteria are associated with ovarian cancer.
- Some fungi are also associated with certain types of cancers. Long-term Candida infections promote oral cancer through secretions of various metabolites.
- Certain eukaryotic and multicellular parasites are known human carcinogens. Examples include liver flukes, blood flukes, Clonorchis sinensis and Toxoplasma gondii; these can result in cancers such as liver, bladder, colorectal, and brain cancer.
- Microbes can increase cancer risk; however, the microbiome represents untapped potential for understanding, treating, and potentially preventing cancer.
- While some microbes are procarcinogens (cancer-causing agents), others are anticarcinogens (capable of treating or suppressing cancer progression). For example, commensal flora may be used to control cancer proliferation.
- Probiotics from bioactive foods can aid in metabolism and immune system modulation; this can prevent cancer cell growth and division.
- Studies suggest that probiotic microbes and their metabolic products may be involved in chemoprevention of various types of cancer.
- The role of inflammation in pathogenesis—Inflammation is the body’s defense mechanism. This is the process whereby the immune system recognizes and removes harmful and foreign stimuli to begin the healing process.
- Inflammation can be either acute or chronic. Some common reasons for chronic inflammation are autoimmune disorders such as lupus (where the body attacks its own healthy tissue), exposure to toxins like pollution or industrial chemicals, and untreated acute inflammation (infection or injury).
- In response to injury, the body triggers a chemical signaling cascade that stimulates responses aimed at healing affected tissues. These signals activate leukocyte chemotaxis from the general circulation to damage sites; these activated leukocytes then produce cytokines that induce inflammatory responses.
- Inflammatory response processes depend on the nature of the initial stimulus and its location in the body; however, all share a common mechanism.
- Pattern recognition receptors (PRRs), expressed in both immune and non-immune cells, detect pathogen-associated molecular patterns (PAMPs) and triggers an inflammatory response.
- Damage-associated molecular patterns (DAMPs) are host biomolecules that can initiate and perpetuate non-infectious inflammatory responses.
- Normal microbes can inhibit inflammation; byproducts of bacterial metabolic processes, including short-chain fatty acids (SCFAs), play a role in inhibiting inflammation.
- Lactobacillus spp., bifidobacteria, and Akkermansia muciniphill help produce the inflammation-reducing SCFA butyrate.
- Necrosis is a premature death of cells in living tissue caused by factors external to the cell or tissue. This includes infection or trauma. This results in the unregulated digestion of cell components. Apoptosis is a naturally occurring programmed and targeted cause of cellular death; while apoptosis frequently provides beneficial effects, necrosis is almost always detrimental and can be fatal.
- Cellular death due to necrosis involves various receptors activated; these results in the uncontrolled release of cell death products into the extracellular space, initiating an inflammatory response that triggers leukocytes and nearby phagocytes to eliminate the dead cells through phagocytosis.
- Microbial damaging substances released from leukocytes create collateral damage to surrounding tissue, inhibiting the healing process.
- Necrotizing fasciitis, a bacterial infection of the tissue under the skin called fascia, is a serious infection that destroys muscle and fat tissue. This can be caused by multiple bacteria like group A Streptococcus (group A strep), Klebsiella, Clostridium, E. coli, Staphylococcus aureus, and Aeromonas hydrophila, among others.
- Polymicrobial necrotizing fasciitis is an infection caused by more than one type of bacteria, usually mixed anaerobic and aerobic bacteria.
- Monomicrobial necrotizing fasciitis is usually caused by group A Streptococcus or Staphylococcus aureus.
- Necrotizing fasciitis most frequently occurs sporadically, not linked to similar infections in others, often when bacteria enter body through a break in skin (cut, scrape, burn, insect bite, or puncture wound). This is more common in people with diabetes, cancer, or kidney disease.
- Necrosis treatment involves treating the underlying cause of necrosis (e.g., infection) before the dead tissue. Therapy involves surgical or non-surgical removal of dead tissue (debridement).
- Chemical removal of necrotic tissue can also be accomplished through enzymatic debriding agents (e.g., proteolytic, fibrinolytic, collagenases)— these agents target various components of dead tissue. In select cases, maggot therapy using Lucilia sericata larvae has been employed.
- In plants, a calcium deficiency can impede pectin synthesis for cell wall bonding. This impedes meristems and can create necrosis in stem and root tips and leaf edges of the plant.
- Not all diseases are caused by pathogens; there are four main types of disease: infectious diseases, deficiency diseases (including immune deficiency, protein-energy malnutrition, scurvy, Rickets, Beri Beri, hypocalcemia, osteomalacia (softening of bones), vitamin D deficiency), vitamin K deficiency, and pellagra (niacin deficiency), among others.
Pathogens and Microbial Intelligence
- Bacterial pathogens have developed mechanisms affecting particular hosts through specific, but also collective sensing, interbacterial communication, and decision-making.
- Bacterial cells are exquisitely sensitive to the local environment, and make intricate adjustments to their behavior in adaptation to the ever-changing environment.
- Microbial intelligence encompasses complex adaptive behaviour in single cells, and altruistic and/or cooperative behavior in populations of like or unlike cells mediated by chemical signaling inducing physiological or behavioral changes to influence colony structures.
- Quorum sensing is a process of biofilm formation requiring joint decision making by a whole colony.
- Under nutritional stress, bacterial colonies can organize themselves to maximize nutrient availability.
- Bacteria can reorganize themselves under antibiotic stress.
- Bacteria can swap genes (e.g., genes coding for antibiotic resistance) between members of mixed species colonies.
- Some bacteria transform into endospores to resist heat and dehydration under harsh conditions.
- Some organisms change their antigens, thereby evading immune system recognition.
- Pathogens secrete effector proteins to overcome host resistance.
Host Defenses Against Microbes
- Defense against microbes is mediated by both innate and adaptive immunity.
- The innate immune response plays a role in determining the nature of the specific response.
- The immune system responds in specialized ways to specific types of microbes.
- Survival and pathogenicity of microbes are influenced by their ability to evade or resist protective defenses.
- Tissue injury and disease result when microbes overcome host defense.
- Distinct effector responses exhibited are dependent on the site of entry, spread/route of transmission in the host.
- Pathogenicity and survival of the microbes depend on the ability to evade or resist host immune responses.
- Disease or tissue injury can be a consequence of the pathogenicity of the microbe as well as the host immune response itself.
- The primary forms of host defense are termed innate, inborn, or nonspecific immunity.
- Passive defenses include anatomical barriers (e.g., skin and mucous membranes, fascial planes, body spaces), exogenous secretions(e.g., mucin, saliva, bronchial fluids, gastric HCI), and properdin (a protein in the blood involved in the body's response to certain kinds of infection).
- Passive defenses also include opsonins, lysozyme, physicochemical environments within normal tissues, normal ciliary activity, normal physiological factors (age, sex, race, circadian rhythms), normal microbiological flora in various locations, and even occupational and environmental factors. Fascia is a barrier against spread of infection.
- Passive defenses can be compromised by malnutrition, injury, trauma, fatigue, diseases (e.g., diabetes, leukemia, Hodgkin’s disease), prescribed or addictive drugs (e.g., corticosteroids, antimetabolites, antimicrobials, hallucinogens, crack cocaine), and medically implanted foreign bodies (e.g., vascular prostheses, catheters, drains).
- Active nonspecific defenses are described as a diverse variety of physiological responses — including elevated body temperatures, tachycardia, vomiting, and diarrhea, pituitary-adrenal activation, phagocytic cell activation, and the creation of inflammatory reactions.
- The innate immune response to viral infection often includes the production of interferons (a group of proteins produced in response to viral infection that stimulates cells to block viral transcription and thus protects them from infection).
- dsRNA produced during viral replication induces the expression of interferons—notably IFN-α, produced by virus infected cells, which inhibits intracellular replication of viruses.
- IFN-α activates NK cells to kill virus-infected cells.
- Immune evasion by viruses may involve overcoming the anti-viral effects of interferons, reducing the expression of MHC-I or MHC-II, causing generalized immunosuppression, or undergoing antigenic variation.
- The mechanisms of humoral and cell-mediated immune responses to viruses are numerous, including antibody activity, complement-driven lysis of viral particles, and cytotoxic T cell activity.
- Immunity to extracellular bacteria is often by compliment activation, phagocytosis, and the inflammatory response.
- Some pathogens hide from the immune system by remaining within host cells or by altering or modifying surface antigens or cell components.
- Some pathogenic organisms have developed ways of resisting killing by phagocytosis or by resisting complement attack.
- In certain conditions, pathogens may cause damage by means of growth regulators, such as auxins, gibberellins, and cytokinins.
- Some pathogens produce toxins; these toxins can have numerous effects, such as enzymatic lysis, pore formation, inhibition of protein synthesis, disruption of nerve muscle transmission (e.g., tetanus toxin), and cell lysis.
- Exotoxins are often highly toxic protein molecules that are secreted out of bacteria into the environment.
- Endotoxins are the lipid portions of lipopolysaccharide molecules in the cell wall of Gram negative bacteria.
- Exotoxins are often released after damage to the cell wall. Endotoxins may be released when the bacteria die and cell wall disintegrates.
- Exotoxins and endotoxins have different biological effects on hosts and may be recognized via different mechanisms. Endotoxemia, the presence of endotoxins in the blood, may contribute to conditions like obesity and insulin resistance.
- Some plants have preformed compounds (e.g. wax, cuticle) in their cell walls that impede pathogen entry. Also, structural variation between plant genotypes can contribute to pathogen resistance.
- Defense structures formed in response to pathogen invasion, such as cork layers, abscission layers, and tyloses, physically impede the pathogens further advance.
- Certain pathogenic fungi cause a variety of diseases in plants with various symptoms, including necrosis, blight, chlorosis, hypertrophy/hypoplasia, scab formation, and gall formation. Fungal infections may also be characterized by tissue damage and/or inflammation.
- Fungal pathogenesis is associated with hypersensitivity reactions in host environments as well as mycotoxin production that results in the disruption of host organism cellular processes. There are over 300-400 known mycotoxins and their effects range from inducing mutagenesis and carcinogens, to toxicity with serious consequences.
- Some fungal pathogens exhibit dimorphism (ability to switch between yeast and hyphae forms); this ability enables them to adapt to certain conditions more effectively.
- Many fungal pathogens use chemical compounds (enzymes and toxins) to overcome host defenses and cause disease by interfering with host growth regulatory processes, metabolic pathways, and/or immune mechanisms.
Diagnostic Techniques
- Viruses multiply in living cells, usually in embryo-generated eggs and tissue culture.
- Cytopathic effects, such as giant cell formation, are examined to diagnose viruses.
- Samples are treated with antibacterial antibiotics to remove bacterial contamination and analyzed to detect plant viruses
- Patient serum is taken at illness onset and analyzed (pre-immune serum), then again afterwards (convalescent serum) for antibody presence
- Serological tests, including precipitation, agglutination, immunofluorescence, ELISA, complement fixation, and radioimmunoassays, are used to detect antibodies to known pathogens.
- Immunofluorescence utilizes antibodies labeled with fluorescent dyes that can be read visually or with a spectrophotometer.
- ELISA is another serolical technique whereby antigen-antibody complexes are measured, also via spectrophotometry. Radioimmuno assays use radioactive isotopes to label and detect antibodies.
- Hemmagglutination assays and complement fixation assays, which use blood sera to quantify the amount of viral particles, are other useful diagnostic testing strategies.
- FISH (Fluorescence in situ hybridization) examines DNA or RNA regions using oligonucleotide probes labeled with fluorescence.
- DNA microarrays assess the expression rate of thousands of genes simultaneously.
- PCR (polymerase chain reaction) is a molecular technique used to amplify a specific portion of DNA to detect pathogens.
- Gel electrophoresis uses a solid medium (agarose) to separate fragments of DNA according to their molecular weights
- Restriction length polymorphisms (RFLPs) use restriction enzymes to detect differences in DNA sequences between organisms.
- Southern and northern blots utilize hybridization and probes for identifying DNA and RNA sequences in tissues.
- Colony blots are used to detect specific nucleotide sequences in DNA obtained from colonies grown on an agar plate.
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Test your knowledge on key concepts in medical microbiology. This quiz covers microbial adaptation, medical implants, tissue engineering, and infection mechanisms. Perfect for students in health sciences or anyone interested in microbiological studies.