Macromolecules: Proteins, Carbohydrates, and Lipids

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Questions and Answers

What are the four main types of macromolecules that characterize living things?

Proteins, carbohydrates, lipids, and nucleic acids.

What type of smaller molecules covalently bond to construct polymers?

Monomers

What is the name of a reaction that produces water and joins monomers to create a polymer?

Condensation reaction

What is the name of the process to break down macromolecules?

<p>Hydrolysis</p> Signup and view all the answers

How many different amino acids are found in proteins?

<p>20</p> Signup and view all the answers

What are carbohydrate monomers called?

<p>Monosaccharides</p> Signup and view all the answers

What are the four kinds of molecules that form nucleic acids?

<p>Nucleotides</p> Signup and view all the answers

Give an example of a molecule containing a hydroxyl functional group.

<p>Alcohols (e.g., ethanol)</p> Signup and view all the answers

What property is conferred to a molecule with a hydroxyl group?

<p>Polarity and the ability to form hydrogen bonds with water.</p> Signup and view all the answers

The aldehyde functional group is very reactive and important in building molecules because it releases what?

<p>Energy.</p> Signup and view all the answers

What property is associated with the aldehyde functional group?

<p>Polarity</p> Signup and view all the answers

What functional group, important in carbohydrates and energy reactions, has the structure C=O bonded to two carbon atoms?

<p>Keto group.</p> Signup and view all the answers

In living tissues, the carboxyl functional group ionizes and acts as what?

<p>An acid.</p> Signup and view all the answers

What functional group accepts H+ in living tissues and acts as a base?

<p>Amino group</p> Signup and view all the answers

What is released when a phosphate group is bonded to another phosphate?

<p>Hydrolysis releases much energy.</p> Signup and view all the answers

What functional group stabilizes protein structure by forming disulfide bridges?

<p>Sulfhydryl group</p> Signup and view all the answers

What functional group is nonpolar and important in energy transfer?

<p>Methyl group.</p> Signup and view all the answers

What term describes unbranched polymers of covalently bonded amino acids?

<p>Polypeptide chains.</p> Signup and view all the answers

What type of isomers are amino acids?

<p>Optical isomers.</p> Signup and view all the answers

What is the function of the side chains (R groups) of amino acids?

<p>Determine the 3D structure and function of a protein.</p> Signup and view all the answers

Which amino acids have electrically charged side chains at pH levels typical of living cells?

<p>Arginine, Histidine, Lysine, Aspartic acid, and Glutamic acid</p> Signup and view all the answers

Name three amino acids with polar but uncharged side chains.

<p>Serine, Threonine, and Tyrosine.</p> Signup and view all the answers

In what type of solution do amino acids with nonpolar hydrocarbon side chains cluster together?

<p>Aqueous solution.</p> Signup and view all the answers

List the three special case amino acids.

<p>Cysteine, Glycine, and Proline</p> Signup and view all the answers

What is the name given to the covalent bond formed when two cysteine side chains react in an oxidation reaction?

<p>Disulfide bridge.</p> Signup and view all the answers

What characteristic of glycine allows proteins to be flexible at its location?

<p>Its side chain is a single hydrogen atom, which is small enough to fit into tight corners.</p> Signup and view all the answers

What structural feature does proline lack that significantly limits its ability to participate in hydrogen bonding?

<p>It lacks a hydrogen atom on its amino group.</p> Signup and view all the answers

What are short polymers of less than 20 amino acids called?

<p>Oligopeptides or peptides</p> Signup and view all the answers

Linking of amino acids involves a dehydration reaction between what two groups attached to the alpha carbon?

<p>Carboxyl and amino groups.</p> Signup and view all the answers

Distinguish between the impacts of moderate heat, and extreme heat, on protein confirmation.

<p>Moderate heat will disrupt only the weak interactions. Extreme heat can denature the protein.</p> Signup and view all the answers

What is the definitive 3D arrangement of a protein?

<p>Tertiary structure</p> Signup and view all the answers

What name is given to the process of a protein unfolding and losing its native conformation?

<p>Denaturation</p> Signup and view all the answers

What level of protein structure results from the ways in which subunits bind together and interact?

<p>Quaternary</p> Signup and view all the answers

What chemical feature of a protein must exist for a molecule to bind to it?

<p>A general 'fit' between their three-dimensional shapes</p> Signup and view all the answers

What is the general formula for carbohydrates?

<p>$C_n(H_2O)_m$</p> Signup and view all the answers

What are the four major biochemical roles of carbohydrates?

<p>Stored energy, transport stored energy, carbon skeletons, and extracellular structure</p> Signup and view all the answers

Name one important structural polysaccharide found in plant cell walls?

<p>Cellulose</p> Signup and view all the answers

Besides cellulose, what other polysaccharide is composed of glucose?

<p>Starch</p> Signup and view all the answers

Lipids are characterized by what property?

<p>Hydrophobic</p> Signup and view all the answers

Name three types of lipids and their role in living organisms.

<p>Fats and oils (store energy), Phospholipids (structural roles in cell membranes), Steroids (regulatory roles as hormones and vitamins).</p> Signup and view all the answers

Name the four major types of molecules that characterize living things.

<p>Proteins, carbohydrates, lipids, and nucleic acids.</p> Signup and view all the answers

What type of chemical reaction links monomers together to form polymers?

<p>Condensation reaction.</p> Signup and view all the answers

What are the unbranched (linear) polymers of covalently bonded amino acids called?

<p>Polypeptide chains</p> Signup and view all the answers

What determines the unique three-dimensional shape of each polypeptide chain?

<p>The chain folds into a particular 3D shape.</p> Signup and view all the answers

What is the difference between fats and oils at room temperature, and what accounts for this difference?

<p>Fats are solid at room temperature, while oils are liquid. This is due to the saturation of their fatty acid chains; fats have saturated chains allowing for tighter packing, while oils have unsaturated chains with kinks.</p> Signup and view all the answers

What term describes molecules, like phospholipids, that have both hydrophilic and hydrophobic regions?

<p>Amphipathic.</p> Signup and view all the answers

What is the role of chaperones in protein folding?

<p>Chaperones assist proteins fold correctly by preventing aggregation or misfolding.</p> Signup and view all the answers

What are the primary functions of structural proteins?

<p>Provide physical stability and movement.</p> Signup and view all the answers

Describe the impact of high concentrations of polar or nonpolar substances on protein structure.

<p>High concentrations of polar or nonpolar substances can disrupt protein structure, altering function.</p> Signup and view all the answers

Describe the role of R-groups in determining the properties of amino acids.

<p>R-groups dictate polarity, charge, and size, thereby influencing protein folding and interaction.</p> Signup and view all the answers

What is the role of gene regulatory proteins?

<p>They determine the rate of expression of a gene.</p> Signup and view all the answers

Why are lipids not considered true polymers?

<p>Lipids are aggregates, not polymers, because individual lipid molecules are not covalently bonded.</p> Signup and view all the answers

What type of bonds stabilize the secondary structure of proteins?

<p>Hydrogen bonds</p> Signup and view all the answers

How could a mutation altering a single amino acid within a protein disrupt its function, even if the overall structure appears unchanged?

<p>Even with a similar structure, altered surface chemistry from changed R-groups can prevent binding to target molecules.</p> Signup and view all the answers

Describe a scenario where hydrolysis is crucial in dismantling a polysaccharide. Which specific bond is broken, and what happens to the water molecule?

<p>During digestion, hydrolysis breaks down starch into glucose. Water splits, with -H and -OH attaching to separated monosaccharides at the glycosidic bond.</p> Signup and view all the answers

Imagine a newly discovered organism thrives in extremely cold environments. Hypothesize how its membrane phospholipid composition might differ from typical organisms.

<p>Increased unsaturated fatty acids with shorter chains in phospholipids can increase membrane fluidity despite the low temperatures.</p> Signup and view all the answers

Consider a protein domain consisting primarily of hydrophobic amino acids. Predict its location within a soluble, globular protein in an aqueous cellular environment. How would this arrangement affect protein function?

<p>It is located in the interior, away from water. This arrangement drives folding and stabilizes structure, but may limit surface interactions.</p> Signup and view all the answers

A scientist successfully synthesizes a novel artificial amino acid with a side chain containing a heavy metal ion coordinated to several nitrogen atoms. If incorporated into a protein, how might this amino acid's unique properties be exploited for biotechnological applications (consider protein purification, drug delivery or novel catalysis)?

<p>The metal-coordinating amino acid offers applications like selective metal-affinity purification, targeted drug delivery using metal-sensitive triggers, or creating metalloenzymes for novel catalysis.</p> Signup and view all the answers

Flashcards

What are the four kinds of molecules characteristic of living things?

Molecules that are characteristic of living things. There are four kinds: Proteins, Carbohydrates, Lipids and Nucleic acids.

What are functional groups?

Small groups of atoms that occur frequently in biological molecules and confer specific chemical properties when attached to larger molecules.

What is a condensation reaction?

A reaction that produces water.

What is hydrolysis?

Breaking down macromolecules by the consumption of water

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What are proteins?

Polymers made up of 20 amino acids in varying proportions and sequences. They consist of one or more polypeptide chains, which fold into specific 3D shapes.

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What are isomers?

Molecules that have the same chemical formula but differ in the arrangement of atoms.

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What is role of the side chains (R groups) of amino acids?

The side chains (or R groups) contain functional groups that are importan in determining the 3D structure and function of a protein.

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What are charged amino acids?

Five amino acids with electrically charged side chains at pH levels typical of living cells. These attract water and oppositely charged ions.

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What are polar amino acids?

Five amino acids that have polar side chains. These attract water and form hydrogen bonds with water and other polar substances.

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What are nonpolar amino acids?

Seven amino acids that have nonpolar hydrocarbon side chains. These are hydrophobic and cluster together in aqueous solution

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What is cysteine?

An amino acid with an -SH group that can react with another cysteine side chain to form a covalent bond, creating a disulfide bridge.

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What is glycine?

An amino acid which has a side chain = single H atom

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What is proline?

Amino acid with a modified amino group, lacks an H atom and covalent bonds, ring structure that exhibits limited hydrogen bonding cabability

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What is the primary structure of a protein?

The primary structure of a protein consists of amino acids joined by peptide bonds to create a polypeptide. Short polymers of <20 amino acids are called oligopeptides, or simply peptides.

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How do amino acids get added to a polypeptide?

When the amino group of an amino acid is added to the polypeptide, it interacts in growing chain in a condensation reaction with the carboxyl group of the last amino acid.

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What is a denatured protein?

When the three dimensional shape of a protein is disrupted.

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How do proteins bind?

Proteins can recognize the shape of a given molecule will not bind to a protein unless their is a gerneral fit betwen their three dimensional shapes

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What is the function of enzymes?

Catalyze (speed up) biochemical reactions

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What is the function of structural proteins?

Provide physical stability and movement

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What is the function of defensive proteins?

Recognize and respond to nonself substances (e.g., antibodies)

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What is the function of signaling proteins?

Control physiological processes (e.g., hormones)

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What is the function of receptor proteins?

Receive and respond to chemical signals

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What is the function of the membrane transporter proteins?

Regulate passage of substances across cellular membranes

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What is the function of storage proteins?

Store amino acids for later use

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What is the function of transport proteins?

Bind and carry substances within the organism

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What is the function of gene regulatory proteins?

Determine the rate of expression of a gene

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What is the function of motor proteins?

Cause movement of structures in the cell

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What are carbohydrates?

A class of marcomolecule with the general formula: Cn(H2O)m. Are a source of stored energy that can be released in a usable form by organisms, used to transport stored energy within complex organisms

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What is a monosaccharide?

A simple sugar, such as glucose

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What is a disaccharide?

Two monosaccharides linked by a covalent bond.

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What is a oligosaccharide?

Several (3-20) monosaccharides linked together.

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What is polysaccharide?

Made up of hundreds or thousands of monosaccharides

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What is a glycosidic bond?

A covalent bond in carbohydrates

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What is starch?

The principal energy storage compound of plants

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What is cellulose?

The main component of plant cell walls and the most abundant organic compound on Earth.

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What is glycogen?

The principal energy storage compound of animals.

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What are lipids?

Hydrocarbons that are insoluble because of their many nonpolar covalent bonds. They preferentially aggregate together, away from water, and are not strictly speaking, polymers.

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What is the function of fats and oils

Store energy

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What is the function of phospholipids?

Play important structural roles in cell membranes

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What is the function of carotenoids and chlorophylls?

Help plants capture energy

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What is the function of steriods and modified fatty acids?

Play regulatory roles as hormones and vitamins

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What is a fat?

Triglycerides, or simple lipids, solid at room temperature

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What is an oil?

Triglycerides, or simple lipids, liquid at room temperature

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What is a fatty acid?

A long nonpolar hydrocarbon chain and an acidic carboxyl (-COOH) group.

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What does amphipathic mean?

A molecule with both hydrophilic and hydrophobic regions.

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Study Notes

Today's Objectives

  • The goal is to identify macromolecules, understand their structures to connect chemical properties, protein structure and function.
  • The goal is to understand the relationship between carbohydrate monomers/polymers, and the components/roles of lipids.
  • Identify macromolecules that characterize living things.
  • Learn the different functional groups that give macromolecules their chemical properties.
  • Learn the different amino acids that comprise proteins and how protein structure is determined.
  • One aim is to learn the relationship between carbohydrate monomers and polymers, and examples of each.
  • Describe the components of lipids and begin to learn the biological roles of lipids.

Four Kinds of Molecules

  • Four kinds of molecules are characteristic of living things: proteins, carbohydrates, lipids, and nucleic acids.
  • Proteins consist of amino acids.
  • Proteins form from different combinations of 20 amino acids.
  • Carbohydrates link together monosaccharides.
  • Nucleic acids form from four kinds of nucleotides.
  • Polymers are constructed by covalent bonding of smaller molecules called monomers.
  • Large structures form from limited sets of smaller molecules.
  • These structures are maintained by noncovalent forces.

Functional Groups

  • Functional groups are small groups of atoms recurring in biological molecules.
  • When functional groups attach to larger molecules, they give specific chemical properties.

Condensation and Hydrolysis

  • Most macromolecules form by condensation reactions.
  • Most macromolecules break down by hydrolysis.

Proteins

  • Proteins form from polymers made up of different proportions and sequences of 20 amino acids.
  • Protein size ranges from small, like 51 amino acids in insulin, to the large sizes such as 24,000-36,000 amino acids in titin.
  • Proteins consist of polypeptide chains.
  • Polypeptide chains form from unbranched (linear) polymers of covalently bonded amino acids.
  • Each chain folds into a particular 3D shape.
  • Amino acids denoted as D (dextro, right) and L (levo, left), can exist as optical isomers
  • L-amino acids are found in proteins of most organisms.
  • Isomers have the same chemical formula but with atoms arranged differently,
  • At pH levels found in cells (usually pH 7.0–7.4), carboxyl and amino groups of amino acids are ionized.

Acidic & Basic Properties of Proteins

  • Amino acids show both acidic and basic properties.
  • The side chains (or R groups) contain functional groups determining the 3D structure/function of a protein.
  • At pH levels typical of living cells, five amino acids have electrically charged side chains.
  • Electrically charged side chains attract water (are hydrophilic) and oppositely charged ions.
  • Arginine, histidine and lysine have a charge of +1.
  • Aspartic acid and glutamic acid have a charge of -1.
  • Five amino acids have polar (δ+ and δ–) side chains.
  • Polar side chains attract water (are hydrophilic) and form hydrogen bonds with water/polar substances.
  • Serine, threonine, asparagine, glutamine and tyrosine have polar hydrocarbons.
  • Seven amino acids have nonpolar hydrocarbon side chains, including alanine, isoleucine, leucine, methionine, phenylalanine, tryptophan and valine.
  • Nonpolar hydrocarbon side chains are hydrophobic and cluster together in aqueous solution.

Cysteine and Glycine

  • Three amino acids are special cases: cysteine, glycine and proline.
  • Cysteine has an -SH group and can react with another cysteine side chain in an oxidation reaction to form a covalent bond, also known as a disulfide bridge.
  • Glycine's side chain is a single H atom.
  • Glycine is small enough to fit into tight corners of the protein interior, allowing protein flexibility.
  • Glycine is generally hydrophobic.

Proline

  • Proline's amino group is modified as it lacks an H atom, and covalently bonds to a hydrocarbon side chain.
  • Proline has a ring structure.
  • Proline features limited hydrogen bonding capability.
  • Proline's features include limited rotation around the alpha carbon.
  • Proline is often found where a protein bends or loops, and its generally hydrophobic.
  • Primary structure of a protein consists of amino acids joined by peptide bonds, that is, a polypeptide.
  • Short polymers of <20 amino acids are called oligopeptides.
  • Oligopeptides are also known as peptides.

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