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Questions and Answers
What are the four main types of macromolecules that characterize living things?
What are the four main types of macromolecules that characterize living things?
Proteins, carbohydrates, lipids, and nucleic acids.
What type of smaller molecules covalently bond to construct polymers?
What type of smaller molecules covalently bond to construct polymers?
Monomers
What is the name of a reaction that produces water and joins monomers to create a polymer?
What is the name of a reaction that produces water and joins monomers to create a polymer?
Condensation reaction
What is the name of the process to break down macromolecules?
What is the name of the process to break down macromolecules?
How many different amino acids are found in proteins?
How many different amino acids are found in proteins?
What are carbohydrate monomers called?
What are carbohydrate monomers called?
What are the four kinds of molecules that form nucleic acids?
What are the four kinds of molecules that form nucleic acids?
Give an example of a molecule containing a hydroxyl functional group.
Give an example of a molecule containing a hydroxyl functional group.
What property is conferred to a molecule with a hydroxyl group?
What property is conferred to a molecule with a hydroxyl group?
The aldehyde functional group is very reactive and important in building molecules because it releases what?
The aldehyde functional group is very reactive and important in building molecules because it releases what?
What property is associated with the aldehyde functional group?
What property is associated with the aldehyde functional group?
What functional group, important in carbohydrates and energy reactions, has the structure C=O bonded to two carbon atoms?
What functional group, important in carbohydrates and energy reactions, has the structure C=O bonded to two carbon atoms?
In living tissues, the carboxyl functional group ionizes and acts as what?
In living tissues, the carboxyl functional group ionizes and acts as what?
What functional group accepts H+ in living tissues and acts as a base?
What functional group accepts H+ in living tissues and acts as a base?
What is released when a phosphate group is bonded to another phosphate?
What is released when a phosphate group is bonded to another phosphate?
What functional group stabilizes protein structure by forming disulfide bridges?
What functional group stabilizes protein structure by forming disulfide bridges?
What functional group is nonpolar and important in energy transfer?
What functional group is nonpolar and important in energy transfer?
What term describes unbranched polymers of covalently bonded amino acids?
What term describes unbranched polymers of covalently bonded amino acids?
What type of isomers are amino acids?
What type of isomers are amino acids?
What is the function of the side chains (R groups) of amino acids?
What is the function of the side chains (R groups) of amino acids?
Which amino acids have electrically charged side chains at pH levels typical of living cells?
Which amino acids have electrically charged side chains at pH levels typical of living cells?
Name three amino acids with polar but uncharged side chains.
Name three amino acids with polar but uncharged side chains.
In what type of solution do amino acids with nonpolar hydrocarbon side chains cluster together?
In what type of solution do amino acids with nonpolar hydrocarbon side chains cluster together?
List the three special case amino acids.
List the three special case amino acids.
What is the name given to the covalent bond formed when two cysteine side chains react in an oxidation reaction?
What is the name given to the covalent bond formed when two cysteine side chains react in an oxidation reaction?
What characteristic of glycine allows proteins to be flexible at its location?
What characteristic of glycine allows proteins to be flexible at its location?
What structural feature does proline lack that significantly limits its ability to participate in hydrogen bonding?
What structural feature does proline lack that significantly limits its ability to participate in hydrogen bonding?
What are short polymers of less than 20 amino acids called?
What are short polymers of less than 20 amino acids called?
Linking of amino acids involves a dehydration reaction between what two groups attached to the alpha carbon?
Linking of amino acids involves a dehydration reaction between what two groups attached to the alpha carbon?
Distinguish between the impacts of moderate heat, and extreme heat, on protein confirmation.
Distinguish between the impacts of moderate heat, and extreme heat, on protein confirmation.
What is the definitive 3D arrangement of a protein?
What is the definitive 3D arrangement of a protein?
What name is given to the process of a protein unfolding and losing its native conformation?
What name is given to the process of a protein unfolding and losing its native conformation?
What level of protein structure results from the ways in which subunits bind together and interact?
What level of protein structure results from the ways in which subunits bind together and interact?
What chemical feature of a protein must exist for a molecule to bind to it?
What chemical feature of a protein must exist for a molecule to bind to it?
What is the general formula for carbohydrates?
What is the general formula for carbohydrates?
What are the four major biochemical roles of carbohydrates?
What are the four major biochemical roles of carbohydrates?
Name one important structural polysaccharide found in plant cell walls?
Name one important structural polysaccharide found in plant cell walls?
Besides cellulose, what other polysaccharide is composed of glucose?
Besides cellulose, what other polysaccharide is composed of glucose?
Lipids are characterized by what property?
Lipids are characterized by what property?
Name three types of lipids and their role in living organisms.
Name three types of lipids and their role in living organisms.
Name the four major types of molecules that characterize living things.
Name the four major types of molecules that characterize living things.
What type of chemical reaction links monomers together to form polymers?
What type of chemical reaction links monomers together to form polymers?
What are the unbranched (linear) polymers of covalently bonded amino acids called?
What are the unbranched (linear) polymers of covalently bonded amino acids called?
What determines the unique three-dimensional shape of each polypeptide chain?
What determines the unique three-dimensional shape of each polypeptide chain?
What is the difference between fats and oils at room temperature, and what accounts for this difference?
What is the difference between fats and oils at room temperature, and what accounts for this difference?
What term describes molecules, like phospholipids, that have both hydrophilic and hydrophobic regions?
What term describes molecules, like phospholipids, that have both hydrophilic and hydrophobic regions?
What is the role of chaperones in protein folding?
What is the role of chaperones in protein folding?
What are the primary functions of structural proteins?
What are the primary functions of structural proteins?
Describe the impact of high concentrations of polar or nonpolar substances on protein structure.
Describe the impact of high concentrations of polar or nonpolar substances on protein structure.
Describe the role of R-groups in determining the properties of amino acids.
Describe the role of R-groups in determining the properties of amino acids.
What is the role of gene regulatory proteins?
What is the role of gene regulatory proteins?
Why are lipids not considered true polymers?
Why are lipids not considered true polymers?
What type of bonds stabilize the secondary structure of proteins?
What type of bonds stabilize the secondary structure of proteins?
How could a mutation altering a single amino acid within a protein disrupt its function, even if the overall structure appears unchanged?
How could a mutation altering a single amino acid within a protein disrupt its function, even if the overall structure appears unchanged?
Describe a scenario where hydrolysis is crucial in dismantling a polysaccharide. Which specific bond is broken, and what happens to the water molecule?
Describe a scenario where hydrolysis is crucial in dismantling a polysaccharide. Which specific bond is broken, and what happens to the water molecule?
Imagine a newly discovered organism thrives in extremely cold environments. Hypothesize how its membrane phospholipid composition might differ from typical organisms.
Imagine a newly discovered organism thrives in extremely cold environments. Hypothesize how its membrane phospholipid composition might differ from typical organisms.
Consider a protein domain consisting primarily of hydrophobic amino acids. Predict its location within a soluble, globular protein in an aqueous cellular environment. How would this arrangement affect protein function?
Consider a protein domain consisting primarily of hydrophobic amino acids. Predict its location within a soluble, globular protein in an aqueous cellular environment. How would this arrangement affect protein function?
A scientist successfully synthesizes a novel artificial amino acid with a side chain containing a heavy metal ion coordinated to several nitrogen atoms. If incorporated into a protein, how might this amino acid's unique properties be exploited for biotechnological applications (consider protein purification, drug delivery or novel catalysis)?
A scientist successfully synthesizes a novel artificial amino acid with a side chain containing a heavy metal ion coordinated to several nitrogen atoms. If incorporated into a protein, how might this amino acid's unique properties be exploited for biotechnological applications (consider protein purification, drug delivery or novel catalysis)?
Flashcards
What are the four kinds of molecules characteristic of living things?
What are the four kinds of molecules characteristic of living things?
Molecules that are characteristic of living things. There are four kinds: Proteins, Carbohydrates, Lipids and Nucleic acids.
What are functional groups?
What are functional groups?
Small groups of atoms that occur frequently in biological molecules and confer specific chemical properties when attached to larger molecules.
What is a condensation reaction?
What is a condensation reaction?
A reaction that produces water.
What is hydrolysis?
What is hydrolysis?
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What are proteins?
What are proteins?
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What are isomers?
What are isomers?
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What is role of the side chains (R groups) of amino acids?
What is role of the side chains (R groups) of amino acids?
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What are charged amino acids?
What are charged amino acids?
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What are polar amino acids?
What are polar amino acids?
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What are nonpolar amino acids?
What are nonpolar amino acids?
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What is cysteine?
What is cysteine?
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What is glycine?
What is glycine?
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What is proline?
What is proline?
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What is the primary structure of a protein?
What is the primary structure of a protein?
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How do amino acids get added to a polypeptide?
How do amino acids get added to a polypeptide?
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What is a denatured protein?
What is a denatured protein?
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How do proteins bind?
How do proteins bind?
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What is the function of enzymes?
What is the function of enzymes?
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What is the function of structural proteins?
What is the function of structural proteins?
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What is the function of defensive proteins?
What is the function of defensive proteins?
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What is the function of signaling proteins?
What is the function of signaling proteins?
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What is the function of receptor proteins?
What is the function of receptor proteins?
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What is the function of the membrane transporter proteins?
What is the function of the membrane transporter proteins?
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What is the function of storage proteins?
What is the function of storage proteins?
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What is the function of transport proteins?
What is the function of transport proteins?
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What is the function of gene regulatory proteins?
What is the function of gene regulatory proteins?
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What is the function of motor proteins?
What is the function of motor proteins?
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What are carbohydrates?
What are carbohydrates?
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What is a monosaccharide?
What is a monosaccharide?
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What is a disaccharide?
What is a disaccharide?
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What is a oligosaccharide?
What is a oligosaccharide?
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What is polysaccharide?
What is polysaccharide?
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What is a glycosidic bond?
What is a glycosidic bond?
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What is starch?
What is starch?
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What is cellulose?
What is cellulose?
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What is glycogen?
What is glycogen?
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What are lipids?
What are lipids?
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What is the function of fats and oils
What is the function of fats and oils
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What is the function of phospholipids?
What is the function of phospholipids?
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What is the function of carotenoids and chlorophylls?
What is the function of carotenoids and chlorophylls?
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What is the function of steriods and modified fatty acids?
What is the function of steriods and modified fatty acids?
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What is a fat?
What is a fat?
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What is an oil?
What is an oil?
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What is a fatty acid?
What is a fatty acid?
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What does amphipathic mean?
What does amphipathic mean?
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Study Notes
Today's Objectives
- The goal is to identify macromolecules, understand their structures to connect chemical properties, protein structure and function.
- The goal is to understand the relationship between carbohydrate monomers/polymers, and the components/roles of lipids.
- Identify macromolecules that characterize living things.
- Learn the different functional groups that give macromolecules their chemical properties.
- Learn the different amino acids that comprise proteins and how protein structure is determined.
- One aim is to learn the relationship between carbohydrate monomers and polymers, and examples of each.
- Describe the components of lipids and begin to learn the biological roles of lipids.
Four Kinds of Molecules
- Four kinds of molecules are characteristic of living things: proteins, carbohydrates, lipids, and nucleic acids.
- Proteins consist of amino acids.
- Proteins form from different combinations of 20 amino acids.
- Carbohydrates link together monosaccharides.
- Nucleic acids form from four kinds of nucleotides.
- Polymers are constructed by covalent bonding of smaller molecules called monomers.
- Large structures form from limited sets of smaller molecules.
- These structures are maintained by noncovalent forces.
Functional Groups
- Functional groups are small groups of atoms recurring in biological molecules.
- When functional groups attach to larger molecules, they give specific chemical properties.
Condensation and Hydrolysis
- Most macromolecules form by condensation reactions.
- Most macromolecules break down by hydrolysis.
Proteins
- Proteins form from polymers made up of different proportions and sequences of 20 amino acids.
- Protein size ranges from small, like 51 amino acids in insulin, to the large sizes such as 24,000-36,000 amino acids in titin.
- Proteins consist of polypeptide chains.
- Polypeptide chains form from unbranched (linear) polymers of covalently bonded amino acids.
- Each chain folds into a particular 3D shape.
- Amino acids denoted as D (dextro, right) and L (levo, left), can exist as optical isomers
- L-amino acids are found in proteins of most organisms.
- Isomers have the same chemical formula but with atoms arranged differently,
- At pH levels found in cells (usually pH 7.0–7.4), carboxyl and amino groups of amino acids are ionized.
Acidic & Basic Properties of Proteins
- Amino acids show both acidic and basic properties.
- The side chains (or R groups) contain functional groups determining the 3D structure/function of a protein.
- At pH levels typical of living cells, five amino acids have electrically charged side chains.
- Electrically charged side chains attract water (are hydrophilic) and oppositely charged ions.
- Arginine, histidine and lysine have a charge of +1.
- Aspartic acid and glutamic acid have a charge of -1.
- Five amino acids have polar (δ+ and δ–) side chains.
- Polar side chains attract water (are hydrophilic) and form hydrogen bonds with water/polar substances.
- Serine, threonine, asparagine, glutamine and tyrosine have polar hydrocarbons.
- Seven amino acids have nonpolar hydrocarbon side chains, including alanine, isoleucine, leucine, methionine, phenylalanine, tryptophan and valine.
- Nonpolar hydrocarbon side chains are hydrophobic and cluster together in aqueous solution.
Cysteine and Glycine
- Three amino acids are special cases: cysteine, glycine and proline.
- Cysteine has an -SH group and can react with another cysteine side chain in an oxidation reaction to form a covalent bond, also known as a disulfide bridge.
- Glycine's side chain is a single H atom.
- Glycine is small enough to fit into tight corners of the protein interior, allowing protein flexibility.
- Glycine is generally hydrophobic.
Proline
- Proline's amino group is modified as it lacks an H atom, and covalently bonds to a hydrocarbon side chain.
- Proline has a ring structure.
- Proline features limited hydrogen bonding capability.
- Proline's features include limited rotation around the alpha carbon.
- Proline is often found where a protein bends or loops, and its generally hydrophobic.
- Primary structure of a protein consists of amino acids joined by peptide bonds, that is, a polypeptide.
- Short polymers of <20 amino acids are called oligopeptides.
- Oligopeptides are also known as peptides.
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