Podcast
Questions and Answers
What is the typical size of amino acids that can fit into the binding sites of linear epitopes?
What is the typical size of amino acids that can fit into the binding sites of linear epitopes?
How many amino acids can conformational epitopes consist of?
How many amino acids can conformational epitopes consist of?
What determines the immunodominance observed in antibody responses?
What determines the immunodominance observed in antibody responses?
What can cause a virus to escape the immune response?
What can cause a virus to escape the immune response?
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In the context of antigen-antibody interactions, what aspect enhances the binding quality?
In the context of antigen-antibody interactions, what aspect enhances the binding quality?
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What feature in protein structure aids in forming binding sites for epitopes?
What feature in protein structure aids in forming binding sites for epitopes?
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Which type of epitopes might be considered superior due to their size and surface position?
Which type of epitopes might be considered superior due to their size and surface position?
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What does overlapping B-cell epitopes in complex proteins suggest about their structure?
What does overlapping B-cell epitopes in complex proteins suggest about their structure?
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What is the primary purpose of adding adjuvants to vaccines?
What is the primary purpose of adding adjuvants to vaccines?
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Which component of Freund's complete adjuvant is specifically known for stimulating macrophage activity?
Which component of Freund's complete adjuvant is specifically known for stimulating macrophage activity?
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How do adjuvants help prolong exposure to antigens in the immune system?
How do adjuvants help prolong exposure to antigens in the immune system?
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What role do costimulatory signals play in enhancing the immune response?
What role do costimulatory signals play in enhancing the immune response?
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Which statement accurately describes the impact of local chronic inflammation induced by adjuvants?
Which statement accurately describes the impact of local chronic inflammation induced by adjuvants?
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What is the expected effect of size increase of antigens due to adjuvants?
What is the expected effect of size increase of antigens due to adjuvants?
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How do synthetic polyribonucleotides contribute to the immune response?
How do synthetic polyribonucleotides contribute to the immune response?
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What can occur if an antigen is injected without the addition of an adjuvant?
What can occur if an antigen is injected without the addition of an adjuvant?
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What is a characteristic of B-cell epitopes in terms of their accessibility?
What is a characteristic of B-cell epitopes in terms of their accessibility?
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Which statement accurately describes the difference between conformational and sequential epitopes?
Which statement accurately describes the difference between conformational and sequential epitopes?
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What aspect defines immunodominant epitopes in the context of antibody responses?
What aspect defines immunodominant epitopes in the context of antibody responses?
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What influences the size of an epitope as defined in the context of antibody binding?
What influences the size of an epitope as defined in the context of antibody binding?
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In the context of antigen-antibody interactions, why are surface structures important for B-cell recognition?
In the context of antigen-antibody interactions, why are surface structures important for B-cell recognition?
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What is a consequence of pathogens creating immunodominant epitopes?
What is a consequence of pathogens creating immunodominant epitopes?
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Why do B-cells prefer flexible epitopes for binding?
Why do B-cells prefer flexible epitopes for binding?
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Which of the following represents a key feature of antibodies recognizing epitopes?
Which of the following represents a key feature of antibodies recognizing epitopes?
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What role do loops and bends play in the context of B-cell epitopes?
What role do loops and bends play in the context of B-cell epitopes?
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What characteristic do optimal epitopes possess that aids in antibody binding?
What characteristic do optimal epitopes possess that aids in antibody binding?
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What is a common strategy used by pathogens like HIV to evade the immune system?
What is a common strategy used by pathogens like HIV to evade the immune system?
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Which best describes how antibodies interact with epitopes during the immune response?
Which best describes how antibodies interact with epitopes during the immune response?
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When designing vaccines, what should be avoided to effectively target a pathogen's immune evasion strategy?
When designing vaccines, what should be avoided to effectively target a pathogen's immune evasion strategy?
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What determines the effectiveness of antibodies binding to epitopes despite varying structural conformations?
What determines the effectiveness of antibodies binding to epitopes despite varying structural conformations?
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Why are B cells more likely to recognize complex proteins compared to simpler molecules?
Why are B cells more likely to recognize complex proteins compared to simpler molecules?
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What is the significance of foreignness in determining immunogenicity?
What is the significance of foreignness in determining immunogenicity?
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How do T cells differ from B cells in terms of the molecules they recognize?
How do T cells differ from B cells in terms of the molecules they recognize?
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Why might highly conserved molecules like collagen fail to elicit an immune response?
Why might highly conserved molecules like collagen fail to elicit an immune response?
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What role does evolutionary distance play in immunogenicity?
What role does evolutionary distance play in immunogenicity?
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Explain the relationship between the complexity of a molecule and the immune response it elicits.
Explain the relationship between the complexity of a molecule and the immune response it elicits.
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Why is it that some self proteins can still result in an immune response when modified?
Why is it that some self proteins can still result in an immune response when modified?
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What distinguishes the presentation of antigens by MHC molecules for T cells?
What distinguishes the presentation of antigens by MHC molecules for T cells?
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What makes immune privileged sites, such as the interior of the eye, resistant to immune rejection?
What makes immune privileged sites, such as the interior of the eye, resistant to immune rejection?
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Explain the relationship between molecular size and immunogenicity in antigen processing.
Explain the relationship between molecular size and immunogenicity in antigen processing.
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Why are synthetic homopolymers generally considered poor immunogens?
Why are synthetic homopolymers generally considered poor immunogens?
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Describe the 'Goldilocks zone' in the context of antigen size.
Describe the 'Goldilocks zone' in the context of antigen size.
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What types of structures in proteins increase their immunogenicity?
What types of structures in proteins increase their immunogenicity?
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What role do aromatic amino acids play in the immunogenicity of copolymers?
What role do aromatic amino acids play in the immunogenicity of copolymers?
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How does antigen recognition by T cells depend on molecular size?
How does antigen recognition by T cells depend on molecular size?
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Why might large peptides be more effective in eliciting an immune response compared to smaller antigens?
Why might large peptides be more effective in eliciting an immune response compared to smaller antigens?
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What is the primary distinction between antigens and immunogens?
What is the primary distinction between antigens and immunogens?
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Explain the 'lock and key' analogy in the context of antibody-antigen interactions.
Explain the 'lock and key' analogy in the context of antibody-antigen interactions.
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Why do most individuals not have immune responses against the proteins in food?
Why do most individuals not have immune responses against the proteins in food?
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In what way does the structure of a molecule influence its potential to act as an immunogen?
In what way does the structure of a molecule influence its potential to act as an immunogen?
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What role do epitopes play in the interaction between antigens and antibodies?
What role do epitopes play in the interaction between antigens and antibodies?
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How does the immune system differentiate between closely related antigens?
How does the immune system differentiate between closely related antigens?
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What is meant by an antigen having a '3D binding pocket'?
What is meant by an antigen having a '3D binding pocket'?
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Discuss why the ability of an antigen to induce a response varies among molecules.
Discuss why the ability of an antigen to induce a response varies among molecules.
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What is the main difference between how B-cells and T-cells recognize antigens?
What is the main difference between how B-cells and T-cells recognize antigens?
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What are the structural features that enable T-cells to see internal epitopes of proteins?
What are the structural features that enable T-cells to see internal epitopes of proteins?
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Describe how the accessibility of epitopes differs between B-cells and T-cells.
Describe how the accessibility of epitopes differs between B-cells and T-cells.
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Explain the composition of the additional molecules required for T-cell antigen interaction.
Explain the composition of the additional molecules required for T-cell antigen interaction.
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What types of chemical nature of antigens are recognized by B-cells?
What types of chemical nature of antigens are recognized by B-cells?
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Why are conformational epitopes important for B-cell recognition?
Why are conformational epitopes important for B-cell recognition?
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What role do the membrane immunoglobulins play in B-cell antigen recognition?
What role do the membrane immunoglobulins play in B-cell antigen recognition?
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How does the mobility of antigens affect T-cell recognition?
How does the mobility of antigens affect T-cell recognition?
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What is the purpose of adjuvants in enhancing antigen presentation?
What is the purpose of adjuvants in enhancing antigen presentation?
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Describe the difference between T-cell and B-cell recognition of antigens.
Describe the difference between T-cell and B-cell recognition of antigens.
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What are immunodominant epitopes and their significance in immune responses?
What are immunodominant epitopes and their significance in immune responses?
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How do pathogens utilize decoy epitopes to evade immune recognition?
How do pathogens utilize decoy epitopes to evade immune recognition?
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Explain the significance of epitope accessibility for effective B-cell binding.
Explain the significance of epitope accessibility for effective B-cell binding.
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What defines the flexibility requirements for epitopes recognized by B-cells?
What defines the flexibility requirements for epitopes recognized by B-cells?
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Discuss the consequences of overlapping epitopes within a protein.
Discuss the consequences of overlapping epitopes within a protein.
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What role do loops and bends in protein structures play for B-cell epitopes?
What role do loops and bends in protein structures play for B-cell epitopes?
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How do sequential and nonsequential epitopes differ in their formation?
How do sequential and nonsequential epitopes differ in their formation?
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Why is the presence of hydrophilic amino acids important for epitopes in solution?
Why is the presence of hydrophilic amino acids important for epitopes in solution?
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What challenges do vaccine designers face regarding immunodominant epitopes?
What challenges do vaccine designers face regarding immunodominant epitopes?
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Describe how antibody binding is affected by the structural shape of epitopes.
Describe how antibody binding is affected by the structural shape of epitopes.
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How can large proteins with hidden amino acids impact B-cell epitope recognition?
How can large proteins with hidden amino acids impact B-cell epitope recognition?
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Explain the importance of the 3D structure of proteins in B-cell epitope recognition.
Explain the importance of the 3D structure of proteins in B-cell epitope recognition.
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Study Notes
Complementary binding between Ag-Ab
- Complementary binding between antigen (Ag) and antibody (Ab) limits the size of the epitope.
- Typically, 6-7 amino acids (aa) or sugars can fit into the deep pocket structures of linear epitope binding sites.
- Conformational epitopes of globular proteins cover a much greater space on flatter surface binding sites of Ab.
Conformational epitopes
- Conformational epitopes may consist of 15-22 aa.
- Complex proteins may contain multiple overlapping B-cell epitopes.
- The size of the binding pocket determines how big the epitope can be.
- This is why viruses can escape the immune response by changing just one aa in the epitope, as this can represent a 20% change in the surface of the binding site.
Immunodominance
- The immune system (IS) will find one or two "favorite" binding sites, which will dominate the immune response.
- These are called immunodominant epitopes and are usually located on the surface of the antigen, are flexible and the right size for binding.
- Pathogens may exploit this by placing a very good epitope on their surface, which does not affect their function, in order to distract the IS from other important epitopes that are needed for function.
B-cell epitopes
- B-cell epitopes can be almost anything: sugars, lipids, proteins, nucleic acids, heavy metals.
- For Ag in solution, epitopes must be:
- Topographically accessible on the native molecular surface (hydrophilic)
- Flexible and mobile for agglutination (often located on bends and loop structures of protein)
- Sequential or nonsequential (conformational)
Adjuvants
- Adjuvants are chemical compounds added to antigens to make them more immunogenic and appealing to the immune system.
- They are not specific to a particular antigen and can be used to enhance immune responses to many different antigens.
- Different adjuvants work through a variety of mechanisms, such as:
- Stimulating immune response by activating innate immune cells, increasing antigen presentation, and providing costimulatory signals.
- Prolonging exposure to the antigen by binding and precipitating the antigen, leading to slow release and increased phagocytosis.
Antigen structure and epitopes
- Lymphocytes do not recognize the entire antigen, but rather small, discrete sites called epitopes.
- B-cells and T-cells can see different epitopes on the same antigen.
- There can be multiple epitopes on a single antigen, and these can overlap.
- Even within the same immune response, an organism can produce multiple antibodies that recognize distinct parts of the same protein.
Example: HIV
- HIV's GP120 protein is a large glycoprotein that is highly immunodominant.
- However, most of this protein does not affect HIV's function, making it a decoy for the immune system.
- This allows HIV to evade the immune system and continue infecting cells.
Antigens
- Any molecule that can interact with an immunoglobulin (Ig) receptor of B-cells or the T-cell receptor complexed with MHC.
- Not all antigens elicit an immune response, only immunogens.
- Immunogens: A molecule that induces a specific immune response.
Immunogen Properties
-
Foreignness: Molecules must be seen as "non-self" for the immune system to react.
- The greater the evolutionary distance between species, the higher the chance of generating an immune response.
- Exceptions: Highly conserved molecules like collagen or cytochrome c may not be immunogenic even in distant species.
- Some self-molecules, normally sequestered from the immune system, will raise an immune response (e.g., sperm or lens tissue).
-
Molecular Size: There is a correlation between the size of a molecule and its immunogenicity.
- The best immunogens are in the range of 100,000 Da.
- Small molecules (5-10,000 Da) are generally poor immunogens.
- Molecules must be big enough to be processed by immune cells.
-
Chemical Heterogeneity: Size alone does not make a good immunogen.
- Synthetic homopolymers (repeating units of the same monomer) are not immunogenic regardless of size.
- Large co-polymers (different types of monomers) can be immunogenic and adding aromatic amino acids increases the chance.
- Proteins with more complexity in their primary structure and showing secondary, tertiary, and quaternary structure increase immunogenicity.
Epitopes
- Lymphocytes (B-cells and T-cells) recognize small, discrete sites on macromolecules called antigenic determinants or epitopes.
- Epitopes seen by B-cells and T-cells differ in several fundamental ways.
- Not all epitopes are created equal.
- Some epitopes are immunodominant, meaning they are the most effective at eliciting an immune response.
- Pathogens often evolve to display immunodominant epitopes that do not affect their function, allowing them to evade the immune system.
-
Epitope Size is defined by the binding site of the antibody.
- Agretope: Part of an antigen that binds to the MHC molecule.
- Epitope: Part of an antigen that is recognized by the T-cell receptor.
- B-cell epitopes can recognize a vast array of molecules, including proteins, sugars, lipids, nucleic acids, and even heavy metals.
- B-cell epitopes must be accessible on the native molecular surface, flexible, and mobile for agglutination.
- B-cell epitopes can be sequential (linear) or nonsequential (conformational).
- T-cell epitopes are primarily seen by T-cells as short peptides presented by MHC molecules. They are typically internal, linear, and amphipathic (having both hydrophilic and hydrophobic regions).
B-cells vs. T-cells
- B-cells recognize antigens directly using their surface immunoglobulins (Ig).
- B-cells can recognize soluble antigens.
- T-cells recognize antigens only when presented by MHC molecules.
- T-cells are restricted to recognizing peptides presented by MHC molecules.
- B-cells recognize any molecule with a 3D shape, including proteins, sugars, lipids, and nucleic acids.
- T-cells can only directly recognize proteins and typically only as peptides presented by MHC molecules.
- B-cell epitopes are often on the surface of proteins, while T-cell epitopes require processing and presentation by MHC molecules.
Immunogenicity and Antigenicity
- Antigenicity refers to the ability of a molecule to bind to an antibody or T-cell receptor.
- Immunogenicity refers to the ability of a molecule to elicit an immune response.
- All immunogens are antigens, but not all antigens are immunogens.
- The immune system is not designed to react to everything, only to those molecules that are considered threats.
- Immunogens are a subset of antigens that trigger a specific immune response.
Antigens
- Any molecule that can specifically interact with the immunoglobulin (Ig) receptor of B-cells (or the T-cell receptor complexed with MHC)
- Not all molecules induce immunity, only immunogens
Immunogens
- Any molecule that induces a specific immune response
- All immunogens are antigens. Not all antigens are immunogens
Flagellin
- Can act as a PAMP (Pathogen-Associated Molecular Pattern) when recognized by TLR
- Can act as an Antigen detected by antibodies in a Western blot
- Acts as an Immunogen when injected and triggers an immune response in vivo
What Makes a Good Immunogen?
- Humoral Immunogens (B-cells): Proteins >> Polysaccharides >> Lipids or Nucleic Acids
- Cell Mediated Immunogens (T-cells): Proteins, some lipids, some glycolipids
Adjuvants
- Activate the immune system
- Enhance phagocytosis
- Can be used to improve the effectiveness of vaccines
Antigens - Epitopes
- Lymphocytes recognize small, discrete sites on macromolecules called antigenic determinants or epitopes
- Epitopes seen by B-cells and T-cells differ in fundamental ways
Immunodominant Epitopes
- Some epitopes are better recognized and elicit a stronger immune response
- These are known as immunodominant epitopes
- Pathogens can intentionally display immunodominant epitopes that are not important for their function
Examples of Immunodominant Epitopes
- HIV GP 120: B cells love it, but it doesn't actually impede HIV's function
- The stem of GP120 is the important part for infection, but it is often ignored by the immune system
Multiple Epitopes
- Each antigen can have multiple epitopes
- Different antibodies can recognize different epitopes on the same antigen
- Epitopes can be overlapping
B-Cell Epitopes
- B-cells recognize proteins, sugars, nucleic acids, and heavy metals
- Epitopes must be topographically accessible on the native molecular surface
- Epitopes must be flexible and mobile
- Epitopes can be sequential or nonsequential (conformational)
T-Cell Epitopes
- T-cells recognize peptides presented on MHC molecules
- Must be amphipathic, containing both hydrophobic and hydrophilic regions
- The binding site of the Ag on MHC is called the Agretope
- The TCR binding site is called the Epitope
MHC Class I vs. MHC Class II
- MHC Class I (9-11 amino acids): Present on all cells, shows the immune system what's going on inside the cell (viruses, cancer)
- MHC Class II (11-17 amino acids): Present on antigen-presenting cells like macrophages, shows the immune system what's happening in the outside world
Comparison of B-Cell and T-Cell Epitopes
Feature | B-cells | T-cells |
---|---|---|
Antigen interaction | Membrane Ig and antigen | Membrane TCR, antigen, MHC |
Soluble Antigen? | Yes | No |
Additional molecules required | No | MHC, CD4/CD8 |
Chemical nature of antigen | Protein, lipid, polysaccharide, nucleic acid | Protein |
Epitopes | Accessible, hydrophilic, mobile, sequential or conformational | Accessible or internal, linear, amphipathic |
Antigens
- Any molecule that can specifically interact with immunoglobulin (Ig) receptors on B cells or the T cell receptor complexed with MHC.
- Not all antigens induce immunity.
- Immunogens are antigens that induce a specific immune response.
Immunogens
- Molecules that elicit a specific immune response.
- Must be "non-self" or foreign to induce an immune response.
- Degree of foreignness influences immunogenicity, meaning that greater phylogenetic distance between species tends to result in greater immunogenicity.
- Highly conserved molecules across species, like collagen and cytochrome c, might not be immunogenic even in distant species.
Adjuvants
- Substances that enhance the immunogenicity of antigens.
- Enhance immunogenicity by:
- Prolonging antigen exposure.
- Creating a depot effect where antigens are slowly released.
- Activating the immune system with TLR ligands, generating help signals.
Antigenic Epitopes
- Specific regions of antigens that are recognized by antibodies or T cell receptors.
- Antibodies can recognize linear epitopes, which are continuous amino acid sequences, or conformational epitopes, which are created by the 3D structure of the antigen.
- T cell epitopes are exclusively protein or glycolipid based and require processing by antigen-presenting cells (APCs).
- T cells recognize processed antigen fragments presented by MHC molecules.
Key Differences Between B-Cell and T-Cell Recognition
- B cells can recognize a wide range of antigens, including proteins, lipids, polysaccharides, and other molecules with 3D structures.
- T cells are restricted in the type of antigens they can recognize, primarily proteins, and only when presented by MHC molecules.
- B cells directly bind to antigens.
- T cells only recognize processed peptides that are presented by MHC molecules.
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Description
Test your knowledge on the complementary binding between antigens and antibodies, including the size and types of epitopes. This quiz covers essential concepts such as conformational epitopes and immunodominance. Perfect for students of immunology and related fields.