HAEM3002A DNA Replication Lecture Summary
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Questions and Answers

What is the consensus sequence of the 9 bp DnaA boxes in oriC?

5’-TTATCCACA-3'

What is the sequence of the 13-bp AT-rich region where initiation of replication commences?

5’-GATCTNTTTNTTT-3'

Which protein binds to the unwound region in DNA replication and is facilitated by DnaC?

DnaB

What is the process called that denatures the DNA in the 13-mer sequences during replication?

<p>Unzipping</p> Signup and view all the answers

Which protein prevents the renaturation of single-stranded DNA?

<p>Single-strand binding (SSB) protein</p> Signup and view all the answers

What relieves the torsional stress caused by the unwinding of DNA during replication?

<p>DNA gyrase</p> Signup and view all the answers

What are the three models of DNA replication?

<p>Conservative, semi-conservative, dispersive replication</p> Signup and view all the answers

Who showed that DNA replication is semiconservative?

<p>Matthew Meselson and Franklin Stahl (1958)</p> Signup and view all the answers

What are the four steps involved in the general mechanism of DNA replication?

<p>Replication Fork Formation, Primer binding, Elongation, Termination</p> Signup and view all the answers

How does DNA replication occur in terms of continuity and discontinuity?

<p>Semi-discontinuously: one strand is copied continuously, while the other is copied discontinuously in portions</p> Signup and view all the answers

What happens during Elongation in DNA replication?

<p>New DNA strands are formed by complementary base pairing</p> Signup and view all the answers

What is the junction of the unwound molecules called in a replication bubble?

<p>Replication fork</p> Signup and view all the answers

How does leading-strand synthesis proceed?

<p>Continuously in the 5' to 3' direction through RNA primers</p> Signup and view all the answers

What is the nature of lagging-strand synthesis?

<p>Discontinuous in the 5' to 3' direction with the formation of Okazaki fragments</p> Signup and view all the answers

How are Okazaki fragments eventually linked together?

<p>Through later linkage after being synthesized discontinuously</p> Signup and view all the answers

Explain the Watson-Crick base-pairing during DNA replication.

<p>A pairs with T (2xH-bonds) and G pairs with C (3xH-bonds)</p> Signup and view all the answers

In which direction does the phosphodiester bond formation occur during DNA replication?

<p>In the 5' to 3' direction</p> Signup and view all the answers

List the three processes involved in DNA replication on prokaryotic cells.

<ol> <li>Preparation and priming the DNA for replication</li> <li>DNA polymerization</li> <li>Termination of replication</li> </ol> Signup and view all the answers

What is the function of DNA gyrase in DNA replication in prokaryotic cells?

<p>Supercoiling</p> Signup and view all the answers

Which DNA polymerase in prokaryotic cells is involved in new strand elongation?

<p>DNA polymerase III</p> Signup and view all the answers

What is the role of the 𝜀 (epsilon) subunit in DNA polymerase III?

<p>3'→5' exonuclease activity</p> Signup and view all the answers

Name the protein responsible for binding to single-stranded DNA in prokaryotic DNA replication.

<p>SSB (single-strand binding)</p> Signup and view all the answers

What is the function of DnaB (helicase) in prokaryotic DNA replication?

<p>DNA unwinding</p> Signup and view all the answers

Which DNA polymerase in prokaryotic cells is involved in primer excision and filling the gaps?

<p>DNA polymerase I</p> Signup and view all the answers

What cleaves the flap structure at the Okazaki fragments during DNA replication?

<p>Endonucleases (such as Fen1)</p> Signup and view all the answers

What seals the gap in DNA after removal of the flap structure during DNA replication?

<p>DNA ligase I</p> Signup and view all the answers

Why is the RNA primer sequence at the 3′-hydroxyl end not replaceable by DNA polymerase during DNA replication?

<p>Loss of 30-200 nucleotides with each replication cycle</p> Signup and view all the answers

What is the repetitive non-coding sequence of DNA at the 3′ end, crucial for preventing loss of genetic information during replication?

<p>5’-TTAGGG-3’</p> Signup and view all the answers

What is the structure called where telomeric DNA is packed into to hide the chromosome ends?

<p>T-loop structure</p> Signup and view all the answers

What kind of proteins coat the telomeric DNA to protect it?

<p>Shelterin proteins</p> Signup and view all the answers

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