Genetics and Model Organisms Quiz

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Questions and Answers

What was the primary contribution of Thomas Hunt Morgan's experiments with fruit flies?

  • Proving that all traits are determined by environmental factors.
  • Developing the first genetically modified organisms.
  • Establishing traits as located on chromosomes. (correct)
  • Introducing the concept of genetic engineering.

Which phenomenon did Thomas Hunt Morgan discover related to chromosome behavior?

  • Transcription
  • Mutation
  • Crossover (correct)
  • Mitosis

Why is Drosophila melanogaster considered a model organism?

  • It has a long lifespan and is commercially valuable.
  • It can produce many generations quickly and shows clear mutations. (correct)
  • It is resistant to all diseases and pests.
  • It has a complex genome requiring extensive resources.

What is the primary reason for using Caenorhabditis elegans in research?

<p>Its simplicity in structure. (C)</p> Signup and view all the answers

What percentage of the genes in Caenorhabditis elegans have human homologues?

<p>36% (B)</p> Signup and view all the answers

What is the approximate number of genes found in the genome of the fruit fly?

<p>14,000 (D)</p> Signup and view all the answers

What does Arabidopsis thaliana serve as a model organism for?

<p>Molecular biology in plants. (A)</p> Signup and view all the answers

How many somatic cells does a mature Caenorhabditis elegans have?

<p>959 (A)</p> Signup and view all the answers

How long does it typically take Arabidopsis thaliana to produce thousands of shoots?

<p>8-10 weeks (C)</p> Signup and view all the answers

What is the approximate length of the Caenorhabditis elegans genome?

<p>100 million base pairs (A)</p> Signup and view all the answers

What forms can adult Caenorhabditis elegans take?

<p>Males and hermaphrodites (D)</p> Signup and view all the answers

What was the significance of sequencing the fruit fly genome in 2000?

<p>It allowed researchers to study gene function in humans. (A)</p> Signup and view all the answers

What is the role of the cuticle in Caenorhabditis elegans?

<p>To protect the organism (D)</p> Signup and view all the answers

What major genetic topics were elucidated by Morgan's research?

<p>Inheritance patterns and linkage of characters on chromosomes. (A)</p> Signup and view all the answers

What is the approximate lifespan of a Caenorhabditis elegans adult?

<p>2-3 weeks (D)</p> Signup and view all the answers

What key advantage does the transparency of Caenorhabditis elegans provide in research?

<p>Facilitates observation of developmental processes (D)</p> Signup and view all the answers

What is the maximum magnification achievable with a conventional light microscope?

<p>1,000 X (A)</p> Signup and view all the answers

Which of the following microscopes has the highest resolving power?

<p>Transmission electron microscope (C)</p> Signup and view all the answers

What is the resolving power of the human eye?

<p>0.1 mm (B)</p> Signup and view all the answers

Which component is NOT part of the mechanical system of a conventional optical microscope?

<p>Eyepiece (A)</p> Signup and view all the answers

What value does NA (Numerical Aperture) represent in microscopy?

<p>The refractive index and angle of the light cone (D)</p> Signup and view all the answers

Which factor primarily determines the resolution in microscopy?

<p>Wavelength of light used (B)</p> Signup and view all the answers

What type of tissue can primarily be observed using optical microscopy?

<p>Epithelial tissue (D)</p> Signup and view all the answers

Which of the following statements about electron microscopy is true?

<p>It offers much higher magnification than light microscopy. (B)</p> Signup and view all the answers

What did Antoni van Leeuwenhoek refer to the microscopic organisms he observed?

<p>Animalcules (D)</p> Signup and view all the answers

Which of the following was NOT a component of cell theory as formulated in 1839?

<p>Cells are capable of spontaneous generation. (A)</p> Signup and view all the answers

Which cell type is characterized by the absence of a nucleus?

<p>Prokaryotic cells (A)</p> Signup and view all the answers

Who are credited with the formulation of cell theory?

<p>Matthias Schleiden and Theodor Schwann (A)</p> Signup and view all the answers

What is the main structural difference between prokaryotic and eukaryotic cells?

<p>Eukaryotic cells have a more complex genome structure. (A)</p> Signup and view all the answers

What significant role did Rudolf Virchow play in the development of cell theory?

<p>He proposed that cells arise from pre-existing cells. (D)</p> Signup and view all the answers

What type of organisms do eukaryotic cells include?

<p>Protozoa, plants, fungi, and animals (D)</p> Signup and view all the answers

How long ago did life emerge on Earth according to the information provided?

<p>3.8 billion years ago (D)</p> Signup and view all the answers

What is the primary purpose of using paraffin in histological processing?

<p>To provide structural support for fine sectioning (C)</p> Signup and view all the answers

Which type of dye is primarily used to stain acidic substances in tissue?

<p>Hematoxylin (D)</p> Signup and view all the answers

What is the main characteristic of resins compared to paraffin in histology?

<p>Resins are harder and facilitate finer cuts than paraffin (C)</p> Signup and view all the answers

What is the purpose of the cryostat in histological techniques?

<p>To maintain tissues at a low temperature during cutting (B)</p> Signup and view all the answers

What technique allows the visualization of proteins without the need for fixation or staining?

<p>Green Fluorescent Protein (GFP) (B)</p> Signup and view all the answers

Which of the following is NOT a basic dye used in optical microscopy?

<p>Eosin (A)</p> Signup and view all the answers

What does the rate of fluorescence recovery in FRAP indicate?

<p>The rate of protein movement within the cell (A)</p> Signup and view all the answers

In FRET, what is required for the interaction between two proteins to be detected?

<p>They must absorb and emit light at different wavelengths (C)</p> Signup and view all the answers

What is the typical thickness range for sections made with a microtome for optical microscopy?

<p>Between 3-5 mm (C)</p> Signup and view all the answers

How are freeze-fixed samples typically sectioned?

<p>Using a cryostat while maintaining a low temperature (B)</p> Signup and view all the answers

How does confocal microscopy improve the detail of images acquired from samples?

<p>By focusing laser light onto a defined spot at a specific depth (D)</p> Signup and view all the answers

What allows for the direct visualization of cells in liquid mediums without significant processing?

<p>The absence of fixation or sectioning steps (D)</p> Signup and view all the answers

What is the purpose of the pinhole in the optical pathway of a confocal microscope?

<p>To filter out light from out-of-focus areas (B)</p> Signup and view all the answers

What method can be used to visualize 3D objects using confocal microscopy?

<p>Scanning several optical planes and stacking them (C)</p> Signup and view all the answers

Which aspect of protein visualization does the GFP revolution primarily focus on?

<p>Live imaging of proteins without fixation (C)</p> Signup and view all the answers

What type of analysis does FRET specifically enable?

<p>Detection of protein interactions based on proximity (D)</p> Signup and view all the answers

Flashcards

What is the basic unit of life?

Cells, a fundamental unit of life, are the building blocks of all living organisms.

What does the cell theory define?

Developed by Schleiden and Schwann, cell theory states that all living organisms are composed of one or more cells, cells are the basic unit of structure and organization in organisms, and cells arise from pre-existing cells.

What are prokaryotic cells?

These cells lack a nucleus, have a simple structure, and are found in bacteria and archaebacteria.

What are eukaryotic cells?

These cells have a true nucleus, a complex structure, and are found in all other organisms, including plants, animals, fungi, and protozoa.

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What is a Leeuwenhoek microscope?

A simple but precise microscope used by Antoni van Leeuwenhoek, enabling him to observe microscopic organisms like bacteria and protozoa.

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What are protozoa?

Small, single-celled organisms that are visible under a microscope and can be either plant- or animal-like.

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How do cells reproduce?

The process where cells multiply by dividing into two identical daughter cells.

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What is spontaneous generation?

The theory that life can arise spontaneously from non-living matter, which has been disproven by cell theory.

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What is C. elegans?

A transparent, nematode worm with a simple body plan, consisting of about 959 somatic cells and 1000 to 2000 germ cells.

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What are some research areas where C. elegans is used?

C. elegans is used to study animal development, cell differentiation, the nervous system, aging, cell death, and the structure of the genome.

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How does C. elegans reproduce?

C. elegans can reproduce both sexually and asexually. Hermaphrodites, the most common form, possess both male and female reproductive organs and can self-fertilize. Males with a copulatory tail can mate with hermaphrodites, increasing genetic diversity.

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What is the life cycle of C. elegans?

From egg to adult, C. elegans takes about 3-5 days to mature. Adults live for 2-3 weeks and can lay hundreds of eggs.

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What is special about the C. elegans genome?

C. elegans was the first multicellular organism to have its genome sequenced, containing about 19,000 protein-coding genes.

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Why is C. elegans a good model organism for development studies?

Its transparency enables researchers to study cell differentiation and other developmental processes in a living organism.

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How is C. elegans relevant to human research?

Approximately 36% of C. elegans genes have human homologues, making it crucial for studying human biology.

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Who is the scientist credited with promoting C. elegans as a model organism?

Sydney Brenner spearheaded the use of C. elegans as a model organism for research, particularly in neural development.

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Resolving power

The ability of an objective lens to distinguish two closely spaced points as separate and distinct.

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Magnification

The factor by which an image appears to be enlarged.

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Electron microscopy

A type of microscope that uses a beam of electrons to illuminate the sample, providing high magnification and resolution.

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Light microscopy

A type of microscope that uses visible light to illuminate the sample, providing lower magnification and resolution compared to electron microscopy.

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Fluorescence microscopy

A technique that allows visualization of cellular structures in a living organism, often using fluorescent dyes.

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Optical microscopy

A type of microscopy that uses a combination of lenses and a light source to magnify and illuminate the sample.

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Super-resolution microscopy

A type of optical microscopy technique that enhances resolution beyond the diffraction limit of light, allowing for visualization of smaller details.

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Neuroscience

The study of the nervous system and its functions.

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Why is Drosophila melanogaster a good model organism?

The fruit fly, Drosophila melanogaster, became a model organism for genetic research due to its short life cycle, numerous offspring, and easily identifiable mutations, like the famous white-eyed fly.

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What major discovery did Morgan's team make about genes and chromosomes?

Thomas Hunt Morgan's team discovered that genetic traits are located on chromosomes and inherited across generations. They mapped the location of genes on chromosomes by observing how traits were passed on in controlled crosses.

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What is the 'crossover' phenomenon?

The phenomenon where parts of different chromosomes can exchange genetic material during cell division.

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What is the size of the Drosophila melanogaster genome?

The complete sequence of a fruit fly's genome contains around 14,000 genes and 180 million base pairs.

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How is the Drosophila melanogaster genome used for studying human diseases?

The fruit fly's complete genome sequence is freely available for scientists to research. This allows researchers to compare fly genes to human genes, potentially identifying links to human diseases.

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What has Drosophila melanogaster research contributed towards understanding animal development?

Research on the fruit fly has led to the discovery of genes that control development and differentiation in animals. This knowledge has been crucial for understanding how organisms develop.

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Why is Arabidopsis thaliana a good model organism for plant biology?

Arabidopsis thaliana, commonly known as thale cress, is a small flowering plant that is widely used as a model organism in plant biology. Its small size, fast life cycle, and ease of manipulation makes it ideal for studying various plant processes.

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What are the key advantages of using Arabidopsis thaliana for research?

Arabidopsis thaliana is chosen for its rapid growth rate and large number of offspring, allowing researchers to study multiple generations within a short period.

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What is GFP?

Visualizing proteins inside living cells without fixing or staining, a key technique that revolutionized biology.

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What is FRAP?

A method to track the movement of GFP-labeled proteins in living cells, where a bleached region recovers fluorescence as unbleached molecules move in. This measures protein movement.

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What is FRET?

Using fluorescent markers that interact, like two GFP variants, to detect protein interactions based on energy transfer. If they are close, the energy is transferred, resulting in a different color.

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What is Confocal Microscopy?

This microscopy technique provides detailed images of a single plane of the sample, focusing a laser onto a specific depth and eliminating out-of-focus light to create clearer views.

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What is the GFP revolution?

It was the beginning of using GFP in research, showing the potential of illuminating living cells with a glowing marker.

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Describe C. elegans.

C. elegans is a transparent nematode worm with a simple body plan, making it an ideal model organism for studying various biological processes.

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Why is GFP important for research?

Researchers can study how genes are expressed in living cells, providing valuable insights into the function of genes and the regulation of gene expression.

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Dehydration in tissue preparation

A process that involves using increasing concentrations of ethanol to remove water from the sample, preparing it for embedding.

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Tissue embedding

The process of infiltrating the sample with a solid medium, like paraffin or resin, to provide structural support and allow for sectioning.

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Histological sections

Thin slices of tissue prepared for microscopic examination, typically obtained using a microtome or ultramicrotome.

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Paraffin

A type of embedding medium used for optical microscopy, made of a mixture of waxes, allowing thin sections for light to pass through.

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Resins

A harder embedding medium used for electron microscopy, allowing finer cuts and better resolution.

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Staining in histology

The process of applying dyes to stained histological sections to reveal different cell structures and components.

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Basic dyes in histology

Basic dyes, like methylene blue, have an affinity for acidic substances, such as DNA, highlighting the cell nucleus.

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Acid dyes in histology

Acid dyes, like eosin, have an affinity for basic substances, like proteins, revealing the cell cytoplasm and extracellular matrix.

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Study Notes

Unit 1: Overview of the Cell and Cell Research

  • Biology is the study of the composition, development, functioning, links, and distribution of living things.
  • Cells are the fundamental units of living beings, capable of independent reproduction.
  • Cell biology analyzes cell structure, function, components, interactions, and properties. It draws on genetics, biochemistry, and immunology among other areas of knowledge.
  • Molecular biology focuses on the processes of living beings from a molecular point of view. It examines macromolecules like nucleic acids (DNA, RNA) and proteins.
  • The fundamental difference is the focus. Cell biology focuses on how cellular systems work, cell regulation, and structure. Molecular biology focuses on the functions of molecular structure (especially in relation to DNA and RNA.)

1.1 Origin and evolution of cells

  • The cell is the basic structural, functional, and biological unit of all known organisms.
  • Robert Hooke (1635-1703) first described cells in cork.
  • Antoni van Leeuwenhoek (1632-1723) observed protozoa, blood cells, sperm, and bacteria, calling them "animalcules".
  • Cell theory (formulated in 1839) states: all living things are made of cells; the cell is the basic unit of structure and organization in organisms; cells come from pre-existing cells; heredity information passes from cell to cell.

1.2 Cells as experimental models

  • Unicellular models: Escherichia coli and Yeast
  • Multicellular models: Arabidopsis thaliana, Caenorhabditis elegans, Drosophila melanogaster, Danio rerio, Mus musculus

1.3 Cell biology instruments (a)

  • Optical microscopy (magnification: 1000x, resolution: 0.2 µm)
  • Electron microscopy (magnification 150,000 - 200,000x, resolution 1-2 nm)
  • Super-resolution Microscopy

1.3 Cell biology instruments (b)

  • Specimen preparation
  • Flow cytometry
  • Subcellular separation
  • Growth of animal cells in culture
  • Virus

Specimen preparation

  • Histological processing: Fixation, Tissue embedding, Sectioning, Staining

Fixation

  • Physical: Cryofixation (exposing tissue to temps below -70°C)
  • Chemical: using chemicals to stabilize macromolecules in the tissue

Tissue embedding

  • Paraffin: used for optical microscopy, consisting of long-chain hydrocarbons.
  • Resins: used for electron microscopy, often harder than paraffin, and capable of finer cuts

Sectioning

  • Histological sections are made in a microtome (3-5 µm) or ultra-microtome (10-100 µm)
  • Freeze-fixed samples are thicker (6-8 µm) and processed in a cryostat

Stainings

  • Dyes with different affinities are used in optical microscopy, dependent on the chemical composition.
  • Examples include hematoxylin (basic), eosin (acidic), and various others.
  • In electron microscopy, high molecular weight molecules like heavy metals (uranium acetate or lead citrate) are often used to improve contrast.

Immunohistochemical techniques

  • Purpose: to identify a specific protein in a tissue section, using specific antibodies.
  • Direct method: Primary antibody is conjugated to the visualizing agent.
  • Indirect method: Primary antibody is not conjugated, a secondary antibody is used for visualization.

Flow cytometry

  • A technique for analyzing the number, size, and complexity of a cell suspension.
  • Used to quantify cells and isolate populations.
  • Components include: Fluidic sample transport, Optical laser illumination, Electronic detector.
  • Measures forward scatter (FSC) for size and side scatter (SSC) for complexity.

Subcellular separation

  • Methods to isolate specific organelles and subcellular particles.
  • Enzymatic methods (like lysozyme) for cells with walls
  • Physical methods (like osmotic shock or mechanical grinding)

Differential centrifugation

  • Used to separate different cellular components based on size and density.

Density gradient centrifugation

  • A method to separate organelles by sedimentation based on density.
  • Utilizes sucrose or cesium chloride solutions to separate components as bands.

Equilibrium separations

  • Separation of components based on their exact density matching the surrounding medium in the gradient.

Cell cultures

  • Isolation and maintenance of cells in lab conditions for study.
  • Advantages over intact organisms: greater control over experimental conditions.
  • Cultured cells can be genetically homogeneous (clones), which simplifies research.

Animal cultures

  • Tissue dispersion to establish primary cultures.
  • Cells grow to cover the dish.
  • Cells can be removed and replated (secondary cultures)
  • Some cells (like fibroblasts) have limited growth potential (passages)

Immortal cells

  • Derived from tumors, they can proliferate indefinitely.
  • Examples include HeLa cells (from a cervical cancer biopsy).

Cultured cells: media

  • Necessary: salts, glucose, amino acids, vitamins, and growth factors.
  • Maintaining oxygen levels (5% CO2 and 95% O2) at 37°C is crucial for optimal growth.

Viruses

  • Require a host cell (animal, plant, fungal, or bacterial) for their lifecycle.
  • Cultivated in cell cultures to study their roles in cell biology.

Other models

  • A. thaliana: used in plant molecular biology, studies of plant development and stress response.
  • D. melanogaster (fruit fly): used in analysis of animal development, differentiation, and genetics, especially in relation to cancer.
  • D. rerio (zebrafish): used for analysis of vertebrate development, neurological development, and regeneration.
  • Mus musculus (mouse): used for comparative studies with humans to study genetics, and for testing and developing therapies for humans (neuroscience, pharmacology, and physiology).

Additional Information: Model Organisms

  • Today's cells all descend from a common ancestor.
  • Studying one organism's features provides valuable insights into other organisms, including humans.
  • Some organisms present advantages for detailed study in a lab environment. (easy growth, short life-span, transparency, or easily available genome information)
  • The choice of an organism depends on the research question being addressed. Factors like the ability to maintain, manipulate, and cultivate the organism are critical decisions.

The choice of model organisms

  • Selecting a suitable model organism is crucial
  • Finding the right organism
  • Developing appropriate techniques

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