Podcast
Questions and Answers
What was the primary contribution of Thomas Hunt Morgan's experiments with fruit flies?
What was the primary contribution of Thomas Hunt Morgan's experiments with fruit flies?
- Proving that all traits are determined by environmental factors.
- Developing the first genetically modified organisms.
- Establishing traits as located on chromosomes. (correct)
- Introducing the concept of genetic engineering.
Which phenomenon did Thomas Hunt Morgan discover related to chromosome behavior?
Which phenomenon did Thomas Hunt Morgan discover related to chromosome behavior?
- Transcription
- Mutation
- Crossover (correct)
- Mitosis
Why is Drosophila melanogaster considered a model organism?
Why is Drosophila melanogaster considered a model organism?
- It has a long lifespan and is commercially valuable.
- It can produce many generations quickly and shows clear mutations. (correct)
- It is resistant to all diseases and pests.
- It has a complex genome requiring extensive resources.
What is the primary reason for using Caenorhabditis elegans in research?
What is the primary reason for using Caenorhabditis elegans in research?
What percentage of the genes in Caenorhabditis elegans have human homologues?
What percentage of the genes in Caenorhabditis elegans have human homologues?
What is the approximate number of genes found in the genome of the fruit fly?
What is the approximate number of genes found in the genome of the fruit fly?
What does Arabidopsis thaliana serve as a model organism for?
What does Arabidopsis thaliana serve as a model organism for?
How many somatic cells does a mature Caenorhabditis elegans have?
How many somatic cells does a mature Caenorhabditis elegans have?
How long does it typically take Arabidopsis thaliana to produce thousands of shoots?
How long does it typically take Arabidopsis thaliana to produce thousands of shoots?
What is the approximate length of the Caenorhabditis elegans genome?
What is the approximate length of the Caenorhabditis elegans genome?
What forms can adult Caenorhabditis elegans take?
What forms can adult Caenorhabditis elegans take?
What was the significance of sequencing the fruit fly genome in 2000?
What was the significance of sequencing the fruit fly genome in 2000?
What is the role of the cuticle in Caenorhabditis elegans?
What is the role of the cuticle in Caenorhabditis elegans?
What major genetic topics were elucidated by Morgan's research?
What major genetic topics were elucidated by Morgan's research?
What is the approximate lifespan of a Caenorhabditis elegans adult?
What is the approximate lifespan of a Caenorhabditis elegans adult?
What key advantage does the transparency of Caenorhabditis elegans provide in research?
What key advantage does the transparency of Caenorhabditis elegans provide in research?
What is the maximum magnification achievable with a conventional light microscope?
What is the maximum magnification achievable with a conventional light microscope?
Which of the following microscopes has the highest resolving power?
Which of the following microscopes has the highest resolving power?
What is the resolving power of the human eye?
What is the resolving power of the human eye?
Which component is NOT part of the mechanical system of a conventional optical microscope?
Which component is NOT part of the mechanical system of a conventional optical microscope?
What value does NA (Numerical Aperture) represent in microscopy?
What value does NA (Numerical Aperture) represent in microscopy?
Which factor primarily determines the resolution in microscopy?
Which factor primarily determines the resolution in microscopy?
What type of tissue can primarily be observed using optical microscopy?
What type of tissue can primarily be observed using optical microscopy?
Which of the following statements about electron microscopy is true?
Which of the following statements about electron microscopy is true?
What did Antoni van Leeuwenhoek refer to the microscopic organisms he observed?
What did Antoni van Leeuwenhoek refer to the microscopic organisms he observed?
Which of the following was NOT a component of cell theory as formulated in 1839?
Which of the following was NOT a component of cell theory as formulated in 1839?
Which cell type is characterized by the absence of a nucleus?
Which cell type is characterized by the absence of a nucleus?
Who are credited with the formulation of cell theory?
Who are credited with the formulation of cell theory?
What is the main structural difference between prokaryotic and eukaryotic cells?
What is the main structural difference between prokaryotic and eukaryotic cells?
What significant role did Rudolf Virchow play in the development of cell theory?
What significant role did Rudolf Virchow play in the development of cell theory?
What type of organisms do eukaryotic cells include?
What type of organisms do eukaryotic cells include?
How long ago did life emerge on Earth according to the information provided?
How long ago did life emerge on Earth according to the information provided?
What is the primary purpose of using paraffin in histological processing?
What is the primary purpose of using paraffin in histological processing?
Which type of dye is primarily used to stain acidic substances in tissue?
Which type of dye is primarily used to stain acidic substances in tissue?
What is the main characteristic of resins compared to paraffin in histology?
What is the main characteristic of resins compared to paraffin in histology?
What is the purpose of the cryostat in histological techniques?
What is the purpose of the cryostat in histological techniques?
What technique allows the visualization of proteins without the need for fixation or staining?
What technique allows the visualization of proteins without the need for fixation or staining?
Which of the following is NOT a basic dye used in optical microscopy?
Which of the following is NOT a basic dye used in optical microscopy?
What does the rate of fluorescence recovery in FRAP indicate?
What does the rate of fluorescence recovery in FRAP indicate?
In FRET, what is required for the interaction between two proteins to be detected?
In FRET, what is required for the interaction between two proteins to be detected?
What is the typical thickness range for sections made with a microtome for optical microscopy?
What is the typical thickness range for sections made with a microtome for optical microscopy?
How are freeze-fixed samples typically sectioned?
How are freeze-fixed samples typically sectioned?
How does confocal microscopy improve the detail of images acquired from samples?
How does confocal microscopy improve the detail of images acquired from samples?
What allows for the direct visualization of cells in liquid mediums without significant processing?
What allows for the direct visualization of cells in liquid mediums without significant processing?
What is the purpose of the pinhole in the optical pathway of a confocal microscope?
What is the purpose of the pinhole in the optical pathway of a confocal microscope?
What method can be used to visualize 3D objects using confocal microscopy?
What method can be used to visualize 3D objects using confocal microscopy?
Which aspect of protein visualization does the GFP revolution primarily focus on?
Which aspect of protein visualization does the GFP revolution primarily focus on?
What type of analysis does FRET specifically enable?
What type of analysis does FRET specifically enable?
Flashcards
What is the basic unit of life?
What is the basic unit of life?
Cells, a fundamental unit of life, are the building blocks of all living organisms.
What does the cell theory define?
What does the cell theory define?
Developed by Schleiden and Schwann, cell theory states that all living organisms are composed of one or more cells, cells are the basic unit of structure and organization in organisms, and cells arise from pre-existing cells.
What are prokaryotic cells?
What are prokaryotic cells?
These cells lack a nucleus, have a simple structure, and are found in bacteria and archaebacteria.
What are eukaryotic cells?
What are eukaryotic cells?
Signup and view all the flashcards
What is a Leeuwenhoek microscope?
What is a Leeuwenhoek microscope?
Signup and view all the flashcards
What are protozoa?
What are protozoa?
Signup and view all the flashcards
How do cells reproduce?
How do cells reproduce?
Signup and view all the flashcards
What is spontaneous generation?
What is spontaneous generation?
Signup and view all the flashcards
What is C. elegans?
What is C. elegans?
Signup and view all the flashcards
What are some research areas where C. elegans is used?
What are some research areas where C. elegans is used?
Signup and view all the flashcards
How does C. elegans reproduce?
How does C. elegans reproduce?
Signup and view all the flashcards
What is the life cycle of C. elegans?
What is the life cycle of C. elegans?
Signup and view all the flashcards
What is special about the C. elegans genome?
What is special about the C. elegans genome?
Signup and view all the flashcards
Why is C. elegans a good model organism for development studies?
Why is C. elegans a good model organism for development studies?
Signup and view all the flashcards
How is C. elegans relevant to human research?
How is C. elegans relevant to human research?
Signup and view all the flashcards
Who is the scientist credited with promoting C. elegans as a model organism?
Who is the scientist credited with promoting C. elegans as a model organism?
Signup and view all the flashcards
Resolving power
Resolving power
Signup and view all the flashcards
Magnification
Magnification
Signup and view all the flashcards
Electron microscopy
Electron microscopy
Signup and view all the flashcards
Light microscopy
Light microscopy
Signup and view all the flashcards
Fluorescence microscopy
Fluorescence microscopy
Signup and view all the flashcards
Optical microscopy
Optical microscopy
Signup and view all the flashcards
Super-resolution microscopy
Super-resolution microscopy
Signup and view all the flashcards
Neuroscience
Neuroscience
Signup and view all the flashcards
Why is Drosophila melanogaster a good model organism?
Why is Drosophila melanogaster a good model organism?
Signup and view all the flashcards
What major discovery did Morgan's team make about genes and chromosomes?
What major discovery did Morgan's team make about genes and chromosomes?
Signup and view all the flashcards
What is the 'crossover' phenomenon?
What is the 'crossover' phenomenon?
Signup and view all the flashcards
What is the size of the Drosophila melanogaster genome?
What is the size of the Drosophila melanogaster genome?
Signup and view all the flashcards
How is the Drosophila melanogaster genome used for studying human diseases?
How is the Drosophila melanogaster genome used for studying human diseases?
Signup and view all the flashcards
What has Drosophila melanogaster research contributed towards understanding animal development?
What has Drosophila melanogaster research contributed towards understanding animal development?
Signup and view all the flashcards
Why is Arabidopsis thaliana a good model organism for plant biology?
Why is Arabidopsis thaliana a good model organism for plant biology?
Signup and view all the flashcards
What are the key advantages of using Arabidopsis thaliana for research?
What are the key advantages of using Arabidopsis thaliana for research?
Signup and view all the flashcards
What is GFP?
What is GFP?
Signup and view all the flashcards
What is FRAP?
What is FRAP?
Signup and view all the flashcards
What is FRET?
What is FRET?
Signup and view all the flashcards
What is Confocal Microscopy?
What is Confocal Microscopy?
Signup and view all the flashcards
What is the GFP revolution?
What is the GFP revolution?
Signup and view all the flashcards
Describe C. elegans.
Describe C. elegans.
Signup and view all the flashcards
Why is GFP important for research?
Why is GFP important for research?
Signup and view all the flashcards
Dehydration in tissue preparation
Dehydration in tissue preparation
Signup and view all the flashcards
Tissue embedding
Tissue embedding
Signup and view all the flashcards
Histological sections
Histological sections
Signup and view all the flashcards
Paraffin
Paraffin
Signup and view all the flashcards
Resins
Resins
Signup and view all the flashcards
Staining in histology
Staining in histology
Signup and view all the flashcards
Basic dyes in histology
Basic dyes in histology
Signup and view all the flashcards
Acid dyes in histology
Acid dyes in histology
Signup and view all the flashcards
Study Notes
Unit 1: Overview of the Cell and Cell Research
- Biology is the study of the composition, development, functioning, links, and distribution of living things.
- Cells are the fundamental units of living beings, capable of independent reproduction.
- Cell biology analyzes cell structure, function, components, interactions, and properties. It draws on genetics, biochemistry, and immunology among other areas of knowledge.
- Molecular biology focuses on the processes of living beings from a molecular point of view. It examines macromolecules like nucleic acids (DNA, RNA) and proteins.
- The fundamental difference is the focus. Cell biology focuses on how cellular systems work, cell regulation, and structure. Molecular biology focuses on the functions of molecular structure (especially in relation to DNA and RNA.)
1.1 Origin and evolution of cells
- The cell is the basic structural, functional, and biological unit of all known organisms.
- Robert Hooke (1635-1703) first described cells in cork.
- Antoni van Leeuwenhoek (1632-1723) observed protozoa, blood cells, sperm, and bacteria, calling them "animalcules".
- Cell theory (formulated in 1839) states: all living things are made of cells; the cell is the basic unit of structure and organization in organisms; cells come from pre-existing cells; heredity information passes from cell to cell.
1.2 Cells as experimental models
- Unicellular models: Escherichia coli and Yeast
- Multicellular models: Arabidopsis thaliana, Caenorhabditis elegans, Drosophila melanogaster, Danio rerio, Mus musculus
1.3 Cell biology instruments (a)
- Optical microscopy (magnification: 1000x, resolution: 0.2 µm)
- Electron microscopy (magnification 150,000 - 200,000x, resolution 1-2 nm)
- Super-resolution Microscopy
1.3 Cell biology instruments (b)
- Specimen preparation
- Flow cytometry
- Subcellular separation
- Growth of animal cells in culture
- Virus
Specimen preparation
- Histological processing: Fixation, Tissue embedding, Sectioning, Staining
Fixation
- Physical: Cryofixation (exposing tissue to temps below -70°C)
- Chemical: using chemicals to stabilize macromolecules in the tissue
Tissue embedding
- Paraffin: used for optical microscopy, consisting of long-chain hydrocarbons.
- Resins: used for electron microscopy, often harder than paraffin, and capable of finer cuts
Sectioning
- Histological sections are made in a microtome (3-5 µm) or ultra-microtome (10-100 µm)
- Freeze-fixed samples are thicker (6-8 µm) and processed in a cryostat
Stainings
- Dyes with different affinities are used in optical microscopy, dependent on the chemical composition.
- Examples include hematoxylin (basic), eosin (acidic), and various others.
- In electron microscopy, high molecular weight molecules like heavy metals (uranium acetate or lead citrate) are often used to improve contrast.
Immunohistochemical techniques
- Purpose: to identify a specific protein in a tissue section, using specific antibodies.
- Direct method: Primary antibody is conjugated to the visualizing agent.
- Indirect method: Primary antibody is not conjugated, a secondary antibody is used for visualization.
Flow cytometry
- A technique for analyzing the number, size, and complexity of a cell suspension.
- Used to quantify cells and isolate populations.
- Components include: Fluidic sample transport, Optical laser illumination, Electronic detector.
- Measures forward scatter (FSC) for size and side scatter (SSC) for complexity.
Subcellular separation
- Methods to isolate specific organelles and subcellular particles.
- Enzymatic methods (like lysozyme) for cells with walls
- Physical methods (like osmotic shock or mechanical grinding)
Differential centrifugation
- Used to separate different cellular components based on size and density.
Density gradient centrifugation
- A method to separate organelles by sedimentation based on density.
- Utilizes sucrose or cesium chloride solutions to separate components as bands.
Equilibrium separations
- Separation of components based on their exact density matching the surrounding medium in the gradient.
Cell cultures
- Isolation and maintenance of cells in lab conditions for study.
- Advantages over intact organisms: greater control over experimental conditions.
- Cultured cells can be genetically homogeneous (clones), which simplifies research.
Animal cultures
- Tissue dispersion to establish primary cultures.
- Cells grow to cover the dish.
- Cells can be removed and replated (secondary cultures)
- Some cells (like fibroblasts) have limited growth potential (passages)
Immortal cells
- Derived from tumors, they can proliferate indefinitely.
- Examples include HeLa cells (from a cervical cancer biopsy).
Cultured cells: media
- Necessary: salts, glucose, amino acids, vitamins, and growth factors.
- Maintaining oxygen levels (5% CO2 and 95% O2) at 37°C is crucial for optimal growth.
Viruses
- Require a host cell (animal, plant, fungal, or bacterial) for their lifecycle.
- Cultivated in cell cultures to study their roles in cell biology.
Other models
- A. thaliana: used in plant molecular biology, studies of plant development and stress response.
- D. melanogaster (fruit fly): used in analysis of animal development, differentiation, and genetics, especially in relation to cancer.
- D. rerio (zebrafish): used for analysis of vertebrate development, neurological development, and regeneration.
- Mus musculus (mouse): used for comparative studies with humans to study genetics, and for testing and developing therapies for humans (neuroscience, pharmacology, and physiology).
Additional Information: Model Organisms
- Today's cells all descend from a common ancestor.
- Studying one organism's features provides valuable insights into other organisms, including humans.
- Some organisms present advantages for detailed study in a lab environment. (easy growth, short life-span, transparency, or easily available genome information)
- The choice of an organism depends on the research question being addressed. Factors like the ability to maintain, manipulate, and cultivate the organism are critical decisions.
The choice of model organisms
- Selecting a suitable model organism is crucial
- Finding the right organism
- Developing appropriate techniques
Studying That Suits You
Use AI to generate personalized quizzes and flashcards to suit your learning preferences.