Gene Expression 2: RNA Translation
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Questions and Answers

What is the primary role of mRNA in the translation process?

The primary role of mRNA is to carry the genetic information from DNA and serve as a template for synthesizing proteins.

Define the genetic code and its significance in protein synthesis.

The genetic code is the relationship between nucleotide sequences in mRNA and the corresponding amino acids in a polypeptide chain, crucial for accurate protein synthesis.

What is the significance of the start codon AUG in the translation process?

The start codon AUG signals the initiation of protein synthesis and codes for the amino acid methionine.

Explain the concept of degenerate genetic code.

<p>Degenerate genetic code means that multiple codons can specify the same amino acid, with exceptions for tryptophan and methionine.</p> Signup and view all the answers

Describe the Wobble theory in relation to codon-anticodon pairing.

<p>Wobble theory suggests that the third nucleotide in a codon is less critical for amino acid specificity, allowing flexibility in base pairing.</p> Signup and view all the answers

What role does tRNA play during translation?

<p>tRNA acts as an adapter molecule that recognizes specific codons on mRNA and carries the corresponding amino acids.</p> Signup and view all the answers

How is the directionality of mRNA important in translation?

<p>The directionality of mRNA, which is read from 5' to 3', ensures proper translation and synthesis of proteins in the correct sequence.</p> Signup and view all the answers

What are the three stop codons and their function in translation?

<p>The three stop codons are UAA, UAG, and UGA; they signal the termination of protein synthesis.</p> Signup and view all the answers

What is the role of the first codon on mRNA during protein synthesis?

<p>It specifies the insertion of methionine in the growing peptide sequence.</p> Signup and view all the answers

Explain what is meant by the genetic code being unambiguous.

<p>The genetic code is unambiguous because each codon corresponds to only one specific amino acid.</p> Signup and view all the answers

Identify the components required for the process of translation.

<p>The components required for translation include mRNA, tRNA, ribosomes, and various protein factors.</p> Signup and view all the answers

Explain the process of peptide bond formation during translation.

<p>The alpha amino group of the amino acid in the A site attacks the carboxylic group of the peptidyl-tRNA in the P site, facilitated by peptidyl transferase.</p> Signup and view all the answers

What is translocation in the context of translation?

<p>Translocation is the movement of the newly formed peptidyl-tRNA from the A site to the P site, enabling the A site to receive a new aminoacyl-tRNA.</p> Signup and view all the answers

What signals the termination of translation?

<p>The appearance of a stop codon (UAA, UAG, or UGA) in the A site signals termination.</p> Signup and view all the answers

What role do releasing factors (eRFs) play during termination?

<p>They recognize the stop codons in the A site and promote the hydrolysis of the bond between the peptide chain and tRNA at the P site.</p> Signup and view all the answers

How many high-energy phosphate bonds are required to form a single peptide bond?

<p>Four high-energy phosphate bonds are required.</p> Signup and view all the answers

Describe the role of molecular chaperones in protein maturation.

<p>Molecular chaperones assist in the folding of proteins into their three-dimensional structures.</p> Signup and view all the answers

What consequences arise from errors in translation?

<p>Faulty proteins produced can be targeted for degradation or may function abnormally.</p> Signup and view all the answers

What components are released at the end of the termination process in translation?

<p>The 80S ribosomal subunit, tRNA, mRNA, GDP, and inorganic phosphate (Pi) are released.</p> Signup and view all the answers

What is the initial chemical change that occurs when tRNA is charged with an amino acid?

<p>ATP is hydrolyzed to AMP, resulting in the charging of tRNA with the amino acyl moiety.</p> Signup and view all the answers

What is the significance of the genetic code being non-overlapping?

<p>It ensures that each codon is read as a distinct triplet, preventing confusion between overlapping sequences.</p> Signup and view all the answers

List the primary components required for the initiation of protein biosynthesis.

<p>tRNA, rRNA, mRNA, eukaryotic initiation factors (eIFs), GTP, ATP, and specific amino acids.</p> Signup and view all the answers

What role does Methionine-tRNA play in the initiation complex?

<p>It specifically binds to the initiation codon AUG to start the protein synthesis process.</p> Signup and view all the answers

Describe the process of tRNA charging.

<p>It involves the attachment of a specific amino acid to the 3' hydroxyl group of tRNA in an ester linkage.</p> Signup and view all the answers

Explain the importance of the anticodon in tRNA.

<p>The anticodon pairs with a specific codon on mRNA, ensuring the correct amino acid is added during protein synthesis.</p> Signup and view all the answers

What happens during the binding of aminoacyl-tRNA to the A site of the ribosome?

<p>eukaryotic elongation factor-1 (eEF-1) and GTP activate the aminoacyl-tRNA, allowing it to bind to the A site.</p> Signup and view all the answers

How does the genetic code being universal impact biotechnology?

<p>It allows for the transfer of genes between different organisms, facilitating advancements in genetic engineering.</p> Signup and view all the answers

What is the function of eukaryotic initiation factors in translation initiation?

<p>eIFs assist in the assembly of the initiation complex by binding to the ribosomal subunits and mRNA.</p> Signup and view all the answers

Define the term 'initiation complex' in the context of protein biosynthesis.

<p>It is the assembly of mRNA, initiator tRNA, and ribosomal subunits that begins the translation process.</p> Signup and view all the answers

Why is the ribosome described as having three binding sites for tRNA?

<p>The A, P, and E sites accommodate the different stages of tRNA interaction during protein synthesis.</p> Signup and view all the answers

What is the main purpose of proteolysis in post-translational processing?

<p>The main purpose of proteolysis is to remove specific amino acid sequences, such as amino terminal and carboxy terminal residues, that are not needed for the protein's final functional form.</p> Signup and view all the answers

How does hydroxylation of proline and lysine affect collagen synthesis?

<p>Hydroxylation of proline and lysine is essential for the stability and proper formation of collagen, as it allows for the formation of hydrogen bonds between collagen molecules.</p> Signup and view all the answers

Explain the role of phosphorylation in cell signaling.

<p>Phosphorylation of serine, threonine, or tyrosine residues in proteins serves as a key regulatory mechanism in cell signaling pathways, altering protein activity and communication.</p> Signup and view all the answers

What is glycosylation and why is it important for glycoproteins?

<p>Glycosylation is the attachment of carbohydrate (CHO) side chains to proteins, which stabilizes them against degradation and aids in proper folding for functional activity.</p> Signup and view all the answers

Describe the significance of acylation in protein function.

<p>Acylation involves adding fatty acids to protein side chains, which helps anchor proteins to cellular membranes and influences their functional roles.</p> Signup and view all the answers

What are bacterial protein synthesis inhibitors and give two examples.

<p>Bacterial protein synthesis inhibitors are antibiotics that disrupt the translation process in bacteria; examples include Tetracyclines and Macrolides like Erythromycin.</p> Signup and view all the answers

How does Shiga toxin affect eukaryotic translation?

<p>Shiga toxin inhibits eukaryotic translation by acting on the 60S ribosomal subunit, preventing tRNA binding and disrupting protein synthesis.</p> Signup and view all the answers

What are the health risks associated with Diphtheria toxin?

<p>Diphtheria toxin poses severe health risks by inhibiting translocation in protein synthesis, potentially leading to breathing difficulties, heart failure, paralysis, and death.</p> Signup and view all the answers

In the context of post-translational modifications, how do signal peptides function?

<p>Signal peptides direct the translocation of newly synthesized proteins to their final destinations and are removed after the transport process.</p> Signup and view all the answers

What is γ-carboxylation of glutamic acid and its role in the body?

<p>γ-Carboxylation of glutamic acid is a modification that enhances calcium binding in proteins like prothrombin and osteocalcin, which is vital for blood clotting and bone health.</p> Signup and view all the answers

Study Notes

Gene Expression 2: RNA Translation and Genetic Code

  • Learning Objectives (ILOs): By the end of the lecture, students will be able to:
    • Discuss the rules of the genetic code.
    • Correlate the function of different RNAs in translation.
    • Describe the translation process.
    • Interpret the role of translation and post-translational modification in health and disease.

What is Translation?

  • Translation is the process of converting the nucleotide sequence of messenger RNA (mRNA, in codons) into an amino acid sequence of a protein.
  • Codon is a sequence of 3 nucleotides that codes for a specific amino acid.
  • The genetic code is a collection of these codons.
  • Protein biosynthesis is called translation since it involves translating information from the 4-letter code of nucleic acids to the 20-letter code of proteins.

Requirements for Translation

  • mRNA: Carriers of genetic information
  • tRNA: Adapter molecules that recognize amino acids at one end and the corresponding codon at the other end. At least one specific tRNA is needed for each amino acid.
  • Ribosomes: Molecular machines coordinating the interaction between mRNA, tRNA, enzymes, and protein factors for protein synthesis.

Genetic Code (Figure 1)

  • The genetic code is the relationship between the nucleotide sequence in DNA or mRNA and the amino acid sequence in a polypeptide chain.
  • Each amino acid can be specified by more than one codon.
  • There is one start codon (AUG, Methionine).
  • There are three stop codons (UAA, UAG, UGA).
  • The genetic information along mRNA is read from 5' to 3' direction.

Characteristics of Genetic Code

  • Degenerate: Multiple codons can code for the same amino acid (except tryptophan and methionine)
  • Unambiguous: Each codon codes for only one amino acid.
  • Non-overlapping: Codons are read one after the other without any gaps.
  • Commaless: No punctuation between codons.
  • Universal: The same code words are used in all organisms.

Protein Biosynthesis Stages

  • Initiation:

    • 80S eukaryotic ribosome dissociates into 40S and 60S subunits.
    • Initiation factors (eIFs) bind to 40S subunit.
    • GTP and eIF-2 bind; mRNA and methionine-tRNA bind to the 40S subunit (at AUG start codon), accompanied by GTP hydrolysis, 60S subunit reassociates to form 80S ribosome initiation complex. (Refer to Figure 2).
  • Elongation:

    • Aminoacyl-tRNA binds to the A site.
    • Peptide bond formation between amino acids on the tRNAs in the A and P sites catalyzed by peptidyl transferase.
    • Translocation. The ribosome moves along the mRNA, shifting the tRNAs from the A site to the P site and the P site to the E site.
  • Termination:

    • Stop codon (UAA, UAG, or UGA) appears in the A site.
    • Release factors (eRFs) recognize the stop codon.
    • Hydrolysis of the bond between the polypeptide chain and tRNA in the P site.
    • Ribosome subunits dissociate.

N.B: tRNA charging (Figure 3)

  • Recognition and attachment of a specific amino acid to the 3' hydroxyl adenosine terminus of the tRNA.

Stage 2: Elongation

  • Binding of aminoacyl-tRNA to the A site (Figure 4)

Stage 3:Termination (Figure 6)

  • Non-sense or stop codon (UAA, UAG, or UGA) appears in the A site.
  • Release factors (eRFs), GTP, and peptidyl transferase promote the hydrolysis of the bond between the polypeptide chain and tRNA at the P site.
  • 80S subunit dissociates.

N.B. The formation of one peptide bond (Figure 5)

  • Requires energy from hydrolysis of four high-energy phosphate bonds

Protein Maturation

  • Activation of protein to a functional form.

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Description

This quiz covers RNA translation and the genetic code, focusing on the process of converting mRNA to protein. Students will explore the roles of different types of RNA in translation, the significance of codons, and the importance of translation in health and disease. Prepare to test your understanding of these key concepts in gene expression.

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