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Questions and Answers
What happens to glycolysis when glucose levels are low in the blood?
What happens to glycolysis when glucose levels are low in the blood?
Which hormone is released when blood glucose levels are high?
Which hormone is released when blood glucose levels are high?
Which pathway is an alternative to glycolysis that is utilized by many bacteria?
Which pathway is an alternative to glycolysis that is utilized by many bacteria?
What is produced during the oxidative decarboxylation of pyruvate?
What is produced during the oxidative decarboxylation of pyruvate?
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What is a key feature of slow regulation of glucose levels?
What is a key feature of slow regulation of glucose levels?
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What is the main energy yield from glycolysis per glucose molecule?
What is the main energy yield from glycolysis per glucose molecule?
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Which enzyme is responsible for converting pyruvate into acetyl-CoA?
Which enzyme is responsible for converting pyruvate into acetyl-CoA?
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Which of the following statements correctly describes glucagon's role in glucose regulation?
Which of the following statements correctly describes glucagon's role in glucose regulation?
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What role does cytochrome C play in the electron transport chain?
What role does cytochrome C play in the electron transport chain?
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What is the primary role of chaperones in protein formation?
What is the primary role of chaperones in protein formation?
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How does complex IV contribute to the formation of a proton gradient?
How does complex IV contribute to the formation of a proton gradient?
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In globular proteins, hydrophobic side chains are predominantly located where?
In globular proteins, hydrophobic side chains are predominantly located where?
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What is the primary function of ATP synthase?
What is the primary function of ATP synthase?
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Which of the following statements correctly describes the proton motive force?
Which of the following statements correctly describes the proton motive force?
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Which chromatography method separates proteins based on their size?
Which chromatography method separates proteins based on their size?
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What happens to proteins during SDS-PAGE?
What happens to proteins during SDS-PAGE?
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What effect does oligomycin have on mitochondrial function?
What effect does oligomycin have on mitochondrial function?
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What is the outcome of the malate/aspartate shuttle?
What is the outcome of the malate/aspartate shuttle?
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How do ionizable side chains primarily interact in globular proteins?
How do ionizable side chains primarily interact in globular proteins?
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What is the isoelectric point (pI) of a protein?
What is the isoelectric point (pI) of a protein?
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What occurs during the conformational changes in the beta subunits of ATP synthase?
What occurs during the conformational changes in the beta subunits of ATP synthase?
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What is the primary reason the proton gradient is essential for ATP synthase function?
What is the primary reason the proton gradient is essential for ATP synthase function?
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What characterizes affinity chromatography?
What characterizes affinity chromatography?
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Which force generally drives the interactions between the hydrophobic side chains of amino acids in proteins?
Which force generally drives the interactions between the hydrophobic side chains of amino acids in proteins?
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What are the characteristics of the ring system in sterol lipids?
What are the characteristics of the ring system in sterol lipids?
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What drives the lipid aggregation process in cell membranes?
What drives the lipid aggregation process in cell membranes?
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How do cholesterol and unsaturated fatty acids influence membrane fluidity?
How do cholesterol and unsaturated fatty acids influence membrane fluidity?
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What defines a nucleoside?
What defines a nucleoside?
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Which pairs of nitrogenous bases have the correct number of hydrogen bonds between them?
Which pairs of nitrogenous bases have the correct number of hydrogen bonds between them?
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What type of bonding primarily stabilizes the secondary structure in proteins?
What type of bonding primarily stabilizes the secondary structure in proteins?
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Which of the following is a function of monomeric nucleotides?
Which of the following is a function of monomeric nucleotides?
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What characterizes the tertiary structure of proteins?
What characterizes the tertiary structure of proteins?
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What is the primary effect of ketoacidosis on blood pH?
What is the primary effect of ketoacidosis on blood pH?
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Which enzyme complex is responsible for the oxidation of NADH?
Which enzyme complex is responsible for the oxidation of NADH?
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What role does Ubiquinone play in the electron transport chain?
What role does Ubiquinone play in the electron transport chain?
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How many protons does complex I transfer to the intermembrane space when NADH is oxidized?
How many protons does complex I transfer to the intermembrane space when NADH is oxidized?
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What is the main function of cytochrome C in the electron transport chain?
What is the main function of cytochrome C in the electron transport chain?
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What is the primary source of electrons for the electron transport chain?
What is the primary source of electrons for the electron transport chain?
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Which complex of the electron transport chain accepts electrons from ubiquinone?
Which complex of the electron transport chain accepts electrons from ubiquinone?
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What distinguishes Ubiquinone from cytochrome C in terms of electron transport?
What distinguishes Ubiquinone from cytochrome C in terms of electron transport?
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What does the intersection of lines in a skeletal formula represent?
What does the intersection of lines in a skeletal formula represent?
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What type of bond is formed by the end-to-end overlap of atomic orbitals?
What type of bond is formed by the end-to-end overlap of atomic orbitals?
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What is the correct formula to calculate the number of moles?
What is the correct formula to calculate the number of moles?
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What does the dilution factor describe?
What does the dilution factor describe?
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Which of the following statements describes mass concentration?
Which of the following statements describes mass concentration?
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What is represented by Avogadro's number?
What is represented by Avogadro's number?
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In the context of chemical reactions, what does the rate constant (K) signify?
In the context of chemical reactions, what does the rate constant (K) signify?
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What does the molecular orbital theory primarily focus on?
What does the molecular orbital theory primarily focus on?
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What does the term 'serial dilution' imply?
What does the term 'serial dilution' imply?
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What characterizes a pi bond?
What characterizes a pi bond?
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Study Notes
Fundamentals of Chemistry
- Atom: smallest particle with properties of a given element, contains protons, neutrons, and electrons
- Z: number of protons, determines the number of electrons in an atom
- A: atomic mass, number of protons and neutrons
- Electrons are negligible mass compared to protons and neutrons (1/2000)
- Unified mass unit: 1/12 mass of a carbon-12 atom
Periodic Table
- Arranges elements by atomic number (Z)
- Atomic weight: average mass of an element's isotopes
- SI prefixes: kilo (k), deci (d), centi (c), milli (m), micro (μ), nano (n), pico (p) for scaling units
Periodic Properties
- Ionization energy: energy to remove an electron
- Electron affinity: energy change when an additional electron is attached
- Electronegativity: ability of an atom to attract electrons
- Atomic radius: distance from nucleus to outermost electron shell
Isotopes
- Same element, different mass numbers (different number of neutrons)
- Carbon-12, carbon-13, and carbon-14 are examples
Nuclide Symbols
- X: chemical symbol
- Mass number/atomic number: represents composition of nucleus
- Example: 14C (carbon-14)
Quantum Mechanical Model
- Electrons have wave-like properties
- Wave functions describe probability of finding an electron at a particular location
- Orbitals: regions of space where an electron is likely to be found
- Quantum numbers (n, l, ml, ms) describe properties of electrons
Orbital Occupancy
- Auf bau principle: fill orbitals with electrons of lowest energy first
- Hund's rule: fill orbitals individually before pairing them
- Pauli exclusion principle: no two electrons can have the same four quantum numbers
Lewis Dot Structures
- Depict valence electrons of atoms
- Used to visualize bonding in molecules
Ions and Bonding
- Ionic bonding: transfer of electrons, forms ions
- Covalent bonding: sharing electrons, forms molecules
- Polar bonds: unequal sharing of electrons due to differences in electronegativity
Hill Notation
- Way to represent chemical formulas for organic molecules, the number of carbon, hydrogen atoms, and alphabetical order of the rest
- Usually written as CxHyZ, where X is carbon, Y is hydrogen, and Z is the rest of the atoms.
Molecular Geometry
- Different arrangement of atoms in a molecule and their bonds.
- Steric number : number of groups attached to an atom and lone pairs
- The various geometries describe how the atoms are arranged in space.
Molecular Orbital Theory
- Molecular orbitals describe regions of space where electrons are likely to be found
- Accurately predicts bond lengths and energies.
Moles and Molar Mass
- Mole: number of discrete particles
- Avogadro's number: 6.022 × 10^23
- Molar mass: mass in grams of one mole of a substance (g mol⁻¹)
Solutions (Concentration)
- Molarity: moles of solute/volume of solution
- Mass concentration: mass of solute/volume of solution
- Concentration of solutions depends on solute (amount of dissolved substance) and solvent (liquid which the solute is dissolved in)
- Serial dilution: solution is generated by one dilution step and used as the solution for the next dilution step
Acids and Bases
- Rate of dissociation = k1 [AB] (k is rate constant)
- Rate of association = k2 [A] [B]
- At equilibrium, k1 [AB] = k2 [A] [B] so [A] [B] / [AB] =K1 /K2 = Kd (dissociation constant)
- Ionic product of water (Kw) = 1 × 10⁻¹⁴ M²
- Brønsted-Lowry Acids and Bases: proton donors (acids) and proton acceptors (bases)
- pKa = -log₁₀(Ka) and high Ka is equal to low pKa and vice versa.
Buffers
- Solutions that resist changes in pH
- Contains a weak acid and its conjugate base(or a weak base and its conjugate acid)
- Used to maintain a relatively constant pH in biological systems
- Henderson-Hasselbalch equation calculates pH of a buffer solution.
Biomolecular Interactions
- Thermodynamics: properties related to energy changes during reactions
- Enthalpy (ΔH): total internal energy of a system
- Equilibrium: concentrations of reactants and products remain constant over time
- Entropy (ΔS): measure of energy dispersal
- Gibbs Free Energy (ΔG): energy available for work in a system at constant temperature and pressure.
- ΔG= ΔH – TAS
Chemical Kinetics
- Activation energy: energy needed for a reaction to occur
- Catalysts: speed up reactions by lowering activation energy
- Transition state: highest energy state during a reaction
- Rate determining step in a reaction is always the step with the highest activation energy
Enzymes
- Catalysts for biochemical reactions
- Bind to specific substrates at the active site.
- Lower the activation energy of a reaction
- Classification of enzymes: Oxidoreductases, Transferases, Hydrolases, Lyases, Isomerases, Ligases
- Michaelis-Menten equation relates reaction velocity to substrate concentration.
- Km (Michaelis constant): substrate concentration at half-maximal velocity, indicates affinity between enzyme and substrate
- Vmax: maximum reaction velocity, when all enzyme active sites are occupied
Protein Structure and Function
- Primary structure: linear sequence of amino acids
- Secondary structure: local folding patterns (α-helices, β-sheets)
- Tertiary structure: overall 3D arrangement of a polypeptide chain
- Quaternary structure: arrangement of multiple polypeptide chains
- Protein purification techniques: separating proteins based on size, charge or binding affinity
- Size-exclusion chromatography
- Ion-exchange chromatography
- Affinity chromatography
Carbohydrates
- Empirical formula (CH₂O)ₙ
- Monosaccharides: simple sugars
- Disaccharides: two monosaccharides linked together
- Polysaccharides: long chains of monosaccharides, cellulose, starch, and glycogen.
Lipids
- Long hydrocarbon chains with a carboxylic acid group at the end
- Amphiphilic: hydrophobic tails and hydrophilic heads
- Examples: fatty acids, triglycerides, phospholipids, and sterols
- Functions: energy storage, membrane structure
Nucleic Acids
- Nucleotides: building blocks of nucleic acids
- Composed of a 5-carbon sugar, a nitrogenous base, and a phosphate group.
- DNA and RNA store genetic information
Other
- E/Z Isomerism: describing how molecules are oriented around double bonds
- Optical Isomerism:Describing enantiomers (mirror image forms) of molecules, their rotations and how they differ from each other.
- Anomer: special type of epimer that forms at anomeric carbon of a cyclic saccharide
- Corn/Cahn-Ingold-Prelog Rules: Rules to show configuration.
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Description
Test your knowledge on key concepts in chemistry, including atoms, atomic structure, and the periodic table. This quiz covers essential definitions and properties such as ionization energy and electronegativity. Discover how isotopes vary within the same element and enhance your understanding of the subject.