Enzymes and Vitamins Overview

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Questions and Answers

What happens to the reaction rate when the enzyme concentration is increased while keeping the substrate concentration constant?

  • The reaction rate increases. (correct)
  • The reaction rate remains unchanged.
  • The reaction rate fluctuates unpredictably.
  • The reaction rate decreases significantly.

What does the induced fit model describe regarding enzyme activity?

  • Enzymes do not interact with substrates.
  • Enzymes are only effective with perfectly shaped substrates.
  • Enzymes have a rigid active site.
  • Enzymes have a flexible active site that adapts to substrates. (correct)

What type of molecule is represented by the structure labeled 'Dipeptide'?

  • Monosaccharide
  • Protein (correct)
  • Nucleotide
  • Amino acid

Which of the following best describes the relationship between the enzyme's active site and the substrate in the induced fit model?

<p>The active site can change shape to interact with the substrate. (C)</p> Signup and view all the answers

What effect does increasing the concentration of urea have on the activity of urease?

<p>It increases the reaction rate until all enzyme molecules are engaged. (B)</p> Signup and view all the answers

Enzymes that catalyze the conversion of Fructose 6-phosphate to Fructose 1,6-bisphosphate primarily belong to which enzyme class?

<p>Transferases (D)</p> Signup and view all the answers

In the context provided, which component is most likely indicated by 'R1' and 'R2' in the dipeptide structure?

<p>Variable side chains of amino acids (C)</p> Signup and view all the answers

What type of interactions are critical for maintaining the three-dimensional structure of enzymes?

<p>R group interactions among amino acids. (C)</p> Signup and view all the answers

What is the expected effect on enzyme activity if the temperature is increased beyond its optimum value?

<p>Enzyme activity will decrease. (B)</p> Signup and view all the answers

Which molecule is likely to act as a substrate in the reactions involving Fructose 6-phosphate?

<p>ATP (B)</p> Signup and view all the answers

Which statement regarding substrates and enzyme activity is incorrect?

<p>Substrates must perfectly fit the active site of an enzyme. (A)</p> Signup and view all the answers

How does a decrease in pH by one unit from the optimum value affect enzyme activity?

<p>Enzyme activity will decrease. (A)</p> Signup and view all the answers

What is the likely role of the molecule Fructose 1,6-bisphosphate in biochemical pathways?

<p>Intermediate in metabolic pathways (D)</p> Signup and view all the answers

If the substrate concentration is significantly higher than enzyme concentration, what is the limiting factor for reaction rate improvements?

<p>Enzyme concentration. (D)</p> Signup and view all the answers

Why is the induced fit model considered an improvement over earlier enzyme models?

<p>It illustrates how enzymes can accommodate varying substrate shapes. (A)</p> Signup and view all the answers

What characterizes an organic oxidation reaction?

<p>It increases the number of C!O bonds. (A)</p> Signup and view all the answers

Which statement about an organic reduction reaction is true?

<p>It decreases the number of C!O bonds. (B)</p> Signup and view all the answers

Which enzyme catalyzes the transfer of an amino group?

<p>Transaminase (C)</p> Signup and view all the answers

What happens to substrate molecules when an enzyme is under saturation conditions?

<p>Incoming substrate molecules wait for an empty active site. (B)</p> Signup and view all the answers

What is the significance of an enzyme's turnover number?

<p>It indicates the number of substrate molecules transformed per minute by one molecule of enzyme. (C)</p> Signup and view all the answers

What is the role of kinases in metabolism?

<p>They catalyze the transfer of phosphate groups. (C)</p> Signup and view all the answers

What substance is typically produced by the action of kinases from ATP?

<p>ADP and a phosphorylated product (C)</p> Signup and view all the answers

How does enzyme concentration typically compare to substrate concentration in a reaction?

<p>Substrate concentration is higher than enzyme concentration. (B)</p> Signup and view all the answers

Which enzyme has the highest turnover number according to the provided information?

<p>Carbonic anhydrase (B)</p> Signup and view all the answers

Why is a coenzyme necessary for oxidoreductases?

<p>To act as a substrate in oxidation or reduction. (A)</p> Signup and view all the answers

What does an oxidoreductase enzyme specifically require?

<p>A coenzyme that can be oxidized or reduced. (B)</p> Signup and view all the answers

What is NOT a factor affecting enzyme activity?

<p>Type of substrate molecule (C)</p> Signup and view all the answers

What is the primary function of proteolytic enzymes?

<p>To catalyze the breakdown of proteins (D)</p> Signup and view all the answers

How are oxidation and reduction processes related?

<p>They are linked processes that must occur together. (C)</p> Signup and view all the answers

What would happen if substrate concentration exceeds the saturation point?

<p>Additional substrate will not further increase the rate of reaction. (B)</p> Signup and view all the answers

What is typically the reason cells maintain a low concentration of enzyme molecules?

<p>To minimize energy costs of enzyme production. (A)</p> Signup and view all the answers

What term is used to describe the inactive forms of proteolytic enzymes?

<p>Zymogens (A)</p> Signup and view all the answers

Which reaction has the lowest turnover number based on the information given?

<p>DNA polymerase I reaction (B)</p> Signup and view all the answers

Which suffix is commonly used in the names of zymogens?

<p>-ogen (B)</p> Signup and view all the answers

What is the consequence of prematurely activating pepsinogen?

<p>It can digest the stomach wall (B)</p> Signup and view all the answers

What type of modification is commonly involved in regulating enzyme activity within a cell?

<p>Covalent modification (D)</p> Signup and view all the answers

What group is most commonly added or removed in the process of covalent modification?

<p>Phosphate group (A)</p> Signup and view all the answers

What is required for the activation of a zymogen?

<p>An enzyme-controlled reaction (C)</p> Signup and view all the answers

Where does pepsinogen convert to its active form, pepsin?

<p>In the stomach (C)</p> Signup and view all the answers

Flashcards

Organic Oxidation

An oxidation reaction in organic chemistry that involves increasing the number of carbon-oxygen bonds and/or decreasing the number of carbon-hydrogen bonds.

Organic Reduction

A reduction reaction in organic chemistry that involves decreasing the number of carbon-oxygen bonds and/or increasing the number of carbon-hydrogen bonds.

Transferase

An enzyme that facilitates the transfer of a functional group from one molecule to another.

Transaminase

A type of transferase that catalyzes the transfer of an amino group from one molecule to another.

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Kinase

A type of transferase that catalyzes the transfer of a phosphate group from ATP to another molecule.

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Induced fit

The ability of an enzyme's active site to change shape slightly to better fit the substrate molecule.

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Active Site

The specific region on an enzyme where the substrate binds and the chemical reaction occurs.

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Substrate

The molecule that an enzyme acts upon.

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R-group interactions

The interactions between amino acid side chains (R groups) within an enzyme that determine its three-dimensional structure. These interactions contribute to the shape and flexibility of the active site.

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Enzyme-substrate complex

The process by which an enzyme binds to its substrate, forming a temporary complex called the enzyme-substrate complex.

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What is a dipeptide?

A dipeptide is formed when two amino acids join together by a peptide bond. This bond forms between the carboxyl group (-COOH) of one amino acid and the amino group (-NH2) of the other amino acid. A molecule of water is released during this process.

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What class of enzyme catalyzes the transfer of a functional group?

Enzymes that catalyze reactions involving the transfer of a functional group (like a phosphate group) from one molecule to another are classified as transferases.

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What type of reaction is shown in the example?

The reaction shown involves the transfer of a phosphate group from ATP to fructose 6-phosphate, producing fructose 1,6-bisphosphate. This is a key step in glycolysis, a metabolic pathway that breaks down glucose for energy.

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What is phosphorylation?

Phosphorylation is the process of adding a phosphate group to a molecule. This process is catalyzed by kinases, a specific type of transferase enzyme.

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What is a kinase?

Kinases are a type of transferase enzyme. They play a crucial role in regulating many cellular processes by adding phosphate groups to specific molecules, often activating or deactivating them.

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How does enzyme concentration affect reaction rate?

Increasing the concentration of the enzyme leads to a higher reaction rate, as more enzyme molecules are available to bind with substrate molecules.

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How does temperature affect enzyme activity?

Higher temperatures generally lead to faster enzyme activity, until the enzyme's optimal temperature is exceeded. Then, the enzyme's structure may be disrupted, leading to decreased activity.

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How does pH affect enzyme activity?

Each enzyme has a specific optimal pH range where it functions best. Deviations from this optimal pH can disrupt the enzyme's structure and decrease its activity.

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How does substrate concentration affect reaction rate?

Increasing the substrate concentration initially boosts the reaction rate as more substrate molecules are available for the enzyme to bind with. However, the rate eventually plateaus, becoming saturated when all enzyme active sites are occupied.

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What is the lock-and-key model of enzyme activity?

The specific shape of an enzyme's active site allows it to bind to a specific substrate molecule, much like a lock and key. The enzyme then catalyzes the reaction, converting the substrate into product.

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Zymogen

Inactive precursor of a proteolytic enzyme.

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Zymogen Activation

Enzyme-controlled reaction that removes part of a zymogen's structure, activating it.

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Covalent Modification

Enzyme activity regulated by adding or removing a chemical group to/from the enzyme.

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Phosphorylation

Adding a phosphate group to an enzyme.

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Dephosphorylation

Removing a phosphate group from an enzyme.

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Pepsin

Proteolytic enzymes that digest proteins in the stomach (inactive zymogen form is pepsinogen).

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Pepsinogen

The inactive precursor of pepsin, activated in the stomach by removing a peptide fragment.

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Phosphorylation/Dephosphorylation

A type of covalent modification where phosphate groups are added/removed from an enzyme through the formation/breaking of covalent bonds (often using ATP).

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Enzyme Saturation

The point at which an enzyme's active sites are fully occupied by substrate molecules, leading to a maximum reaction rate.

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Turnover Number

The number of substrate molecules an enzyme converts into product per minute under ideal conditions. It measures enzyme efficiency.

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Enzyme Concentration and Reaction Rate

The rate at which an enzyme catalyzes a reaction is directly proportional to the enzyme concentration. More enzyme means more reactions occur.

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Enzyme Concentration vs. Substrate Concentration

Enzymes are not consumed in the reactions they catalyze, so cells maintain a lower enzyme concentration than substrate concentration. This is efficient for the cell.

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Enzyme-Substrate Cycle

For an enzyme to function, a substrate must bind to its active site, undergo a reaction, and release the product. The cycle then repeats.

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Optimum Conditions for Enzymes

Enzymes require specific conditions (temperature, pH) to work optimally. These conditions influence their activity.

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Enzyme Activity and Substrate Concentration

The measure of how much enzyme activity changes in response to changes in substrate concentration. It reflects the enzyme's efficiency.

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Factors Affecting Enzyme Activity

Changes in temperature, pH, or other factors can affect enzyme activity by altering the shape of the enzyme and affecting its ability to bind to the substrate.

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Study Notes

Enzymes and Vitamins

  • Enzymes are specialized proteins acting as biochemical catalysts.
  • Without enzymes, biochemical reactions would proceed too slowly.
  • Vitamins are dietary organic compounds needed in small amounts for normal cellular function.
  • Many enzymes contain vitamins as part of their structures, essential for their catalytic function.

General Characteristics of Enzymes

  • Enzymes are compounds (usually proteins) that catalyze biochemical reactions.
  • Nearly every reaction in a cell requires a specific enzyme.
  • Enzymes accelerate cellular reactions by millions of times compared to uncatalyzed reactions.
  • Enzymes are not consumed during the reaction; they only help reactions proceed faster.

Enzyme Structure

  • Enzymes are categorized into simple and conjugated enzymes.
  • Simple enzymes consist only of protein.
  • Conjugated enzymes have a nonprotein part (cofactor) in addition to the protein part (apoenzyme).
  • A cofactor's addition to apoenzyme creates holoenzyme.
  • Cofactors are often small organic molecules (coenzymes) or inorganic ions.
  • Vitamins often function as coenzymes in conjugated enzymes.

Nomenclature and Classification of Enzymes

  • Enzyme naming systems focus on the reaction type and substrate.
  • Suffix "-ase" typically identifies an enzyme.
  • Prefixes often indicate type of reaction (e.g., oxidase, hydrolase).
  • Substrate identification might also be included (e.g., glucose oxidase).
  • Enzymes are grouped into six major classes based on the types of reactions they catalyze.
    • Oxidoreductases, transferases, hydrolases, lyases, isomerases, ligases

Factors that Affect Enzyme Activity

  • Temperature: Higher temperatures initially increase enzyme activity but eventually lead to denaturation (loss of structure), thus decreasing it.
  • pH: Enzyme activity is optimal within a specific pH range. Significant pH shifts lead to denaturation, reducing activity.
  • Substrate Concentration: Higher substrate concentrations boost activity up to the point where all enzyme active sites are occupied. Further increase has no effect (saturation).
  • Enzyme Concentration: Increasing enzyme concentration (with constant substrate) boosts the reaction rate until all substrate molecules are engaged.

Enzyme Inhibition

  • Enzyme inhibitors are substances that temporarily stop or slow an enzyme's catalytic function by binding to it.
  • Reversible Competitive Inhibition: Inhibitor resembles the substrate and competes for the active site.
  • Reversible Noncompetitive Inhibition: Inhibitor binds to a different site than the substrate, altering the enzyme's structure.
  • Irreversible Inhibition: Inhibitor forms a strong covalent bond with the enzyme, permanently inactivating it.

Regulation of Enzyme Activity

  • Allosteric enzymes are enzymes with multiple protein subunits and two types of binding sites (substrate and regulator).
  • Feedback control is a regulatory mechanism where the end product of a reaction sequence inhibits the first enzyme in the pathway.

Medical Uses of Enzymes

  • Enzymes can be used to diagnose diseases.
  • Abnormal enzyme levels in blood often indicate tissue damage.
  • Enzymes are also used therapeutically. (e.g., TPA in treating heart attacks).

Extremozymes

  • Extremophiles are organisms that flourish in extreme environments.
  • Extremozymes are microbial enzymes adapted to function under extreme conditions.
  • Extremozymes are of industrial interest.

Water-Soluble Vitamins

  • Water-soluble vitamins are required in frequent, small doses.
  • These vitamins often act as coenzymes in biochemical reactions.

Fat-Soluble Vitamins

  • The fat-soluble vitamins are vitamins A, D, E, and K.
  • They dissolve in fat rather than water.

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