Podcast
Questions and Answers
During DNA replication, what is the primary role of single-stranded binding proteins (SSBs)?
During DNA replication, what is the primary role of single-stranded binding proteins (SSBs)?
- To prevent the separated DNA strands from re-annealing. (correct)
- To degrade incorrectly incorporated nucleotides.
- To initiate the unwinding of the DNA double helix.
- To catalyze the formation of phosphodiester bonds.
What is the significance of the major and minor grooves in DNA structure?
What is the significance of the major and minor grooves in DNA structure?
- They provide structural stability to the DNA double helix.
- They provide access points for proteins to bind and interact with the DNA sequence. (correct)
- They are the sites where DNA polymerase binds during replication.
- They determine the overall length of the DNA molecule.
Which of the following is a key difference between eukaryotic and prokaryotic DNA replication?
Which of the following is a key difference between eukaryotic and prokaryotic DNA replication?
- Eukaryotic chromosomes are linear and have telomeres, while prokaryotic chromosomes are circular without telomeres. (correct)
- Prokaryotic DNA replication requires a primer, while eukaryotic replication does not.
- Prokaryotic replication involves multiple origins of replication, while eukaryotic replication involves a single origin.
- Eukaryotic DNA replication occurs in the cytoplasm, while prokaryotic replication occurs in the nucleus.
What event typically triggers the termination phase of DNA replication in prokaryotes?
What event typically triggers the termination phase of DNA replication in prokaryotes?
What is the role of the centromere during cell division?
What is the role of the centromere during cell division?
According to Chargaff's rule, if a double-stranded DNA molecule contains 28% adenine (A), what percentage of guanine (G) would it be expected to contain?
According to Chargaff's rule, if a double-stranded DNA molecule contains 28% adenine (A), what percentage of guanine (G) would it be expected to contain?
Which of the following best describes the difference between continuous and discontinuous replication?
Which of the following best describes the difference between continuous and discontinuous replication?
Mitochondrial DNA differs from nuclear DNA primarily in which aspect?
Mitochondrial DNA differs from nuclear DNA primarily in which aspect?
Which of the following is NOT a component of a nucleotide?
Which of the following is NOT a component of a nucleotide?
Mutations in mismatch repair genes can lead to which of the following outcomes?
Mutations in mismatch repair genes can lead to which of the following outcomes?
Flashcards
Nucleotide Components
Nucleotide Components
A nucleotide is composed of a sugar, a phosphate group, and a nucleobase.
Chargaff's Rule
Chargaff's Rule
States that DNA from any cell of all organisms should have a 1:1 ratio (base Pair Rule) of pyrimidine and purine bases.
Major and Minor Grooves
Major and Minor Grooves
The deep groove is called the major groove, and the shallow groove is called the minor groove.
Centromere's Role
Centromere's Role
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DNA Replication
DNA Replication
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Continuous vs. Discontinuous Replication
Continuous vs. Discontinuous Replication
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Role of SSBs
Role of SSBs
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Main Enzymes in DNA Replication
Main Enzymes in DNA Replication
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DNA Polymerase Role
DNA Polymerase Role
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Mismatch Repair
Mismatch Repair
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Study Notes
Energy
- The capacity to do work, existing as heat, light, electricity, and chemical forms.
- Kinetic energy (KE) is the energy of motion, defined as $KE = 1/2 \cdot mv^2$.
- Potential energy (PE) is stored energy, defined as $PE = mgh$.
- Energy is measured in Joules (J), where $1 J = 1 kg \cdot m^2/s^2$, or in calories (cal), where $1 cal = 4.184 J$.
Thermodynamic Systems
- A system is the part of the universe of interest.
- The surroundings are the rest of the universe outside the system.
- Open systems exchange both matter and energy with surroundings.
- Closed systems exchange energy but not matter.
- Isolated systems exchange neither energy nor matter.
State Functions
- Properties that depend only on the current state, not on how it was achieved, such as energy, pressure, volume, and temperature.
- Changes in state functions are independent of path: $\Delta U = U_{final} - U_{initial}$.
First Law of Thermodynamics
- Energy is conserved, meaning it can be converted but not created or destroyed.
- $\Delta U = q + w$, where
- $\Delta U$ is the change in internal energy of the system
- $q$ is heat added to or removed from the system
- $w$ is work done on or by the system
Enthalpy
- Measures heat content of a system at constant pressure, defined as $H = U + PV$.
- Under constant pressure, $\Delta H = \Delta U + P\Delta V = q_p$.
- Exothermic processes release heat $(\Delta H < 0)$.
- Endothermic processes absorb heat $(\Delta H > 0)$.
- Units of enthalpy are Joules (J) or Kilojoules (kJ).
- Standard enthalpy of formation ($\Delta H_f^\circ$) is the enthalpy change when 1 mole of a compound is formed from its elements in their standard states (1 atm and 298 K).
- $\Delta H^\circ = \sum n \Delta H_f^\circ (products) - \sum n \Delta H_f^\circ (reactants)$.
Calorimetry
- Calorimetry measures heat flow using $q = mc\Delta T$.
- $q$ is heat absorbed or released
- $m$ is mass
- $c$ is specific heat capacity
- $\Delta T$ is change in temperature
- Bomb calorimeters measure heat at constant volume: $q = C\Delta T$, where $C$ is the heat capacity of the calorimeter.
Hess's Law
- The enthalpy change of an overall process is the sum of enthalpy changes of its individual steps: $\Delta H_{overall} = \Delta H_1 + \Delta H_2 +...$
- Reversing a reaction changes the sign of $\Delta H$.
Entropy
- Measures the disorder or randomness of a system, defined as $\Delta S = q_{rev}/T$.
- $q_{rev}$ is heat absorbed or released in a reversible process
- $T$ is absolute temperature
- Entropy is measured in Joules per Kelvin (J/K).
- Entropy increases with:
- Increasing temperature
- Increasing volume
- Increasing number of particles
- Change of state from solid to liquid to gas
- Standard entropy change: $\Delta S^\circ = \sum nS^\circ (products) - \sum nS^\circ (reactants)$.
Second Law of Thermodynamics
- The entropy of the universe increases in any spontaneous process: $\Delta S_{universe} = \Delta S_{system} + \Delta S_{surroundings} > 0$.
Gibbs Free Energy
- Measures the spontaneity of a process: $G = H - TS$ and $\Delta G = \Delta H - T\Delta S$.
- Spontaneous process: $\Delta G < 0$.
- Non-spontaneous process: $\Delta G > 0$.
- Equilibrium: $\Delta G = 0$.
- Standard free energy change: $\Delta G^\circ = \sum n \Delta G_f^\circ (products) - \sum n \Delta G_f^\circ (reactants)$.
Free Energy and Equilibrium
- $\Delta G = -RTlnK$, where
- $R$ is the ideal gas constant (8.314 J/mol·K)
- $T$ is absolute temperature
- $K$ is the equilibrium constant
- If $K > 1$, products are favored $(\Delta G < 0)$.
- If $K < 1$, reactants are favored $(\Delta G > 0)$.
- If $K = 1$, equilibrium $(\Delta G = 0)$.
Temperature Dependence of Equilibrium Constant
- van't Hoff equation relates changes in the equilibrium constant with temperature to changes in enthalpy: $ln(K_2/K_1) = -\Delta H^\circ/R (1/T_2 - 1/T_1)$.
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