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Questions and Answers
How many bonds are between A and T in DNA?
How many bonds are between A and T in DNA?
2
How do we tag proteins?
How do we tag proteins?
Proteins are tagged with sulfur but no phosphate.
How do we tag DNA?
How do we tag DNA?
DNA is tagged with phosphate but no sulfur.
Is DNA replication semi-conservative or fully conservative?
Is DNA replication semi-conservative or fully conservative?
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What is the significance of semi-conservative DNA replication?
What is the significance of semi-conservative DNA replication?
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What contributes to the high potential energy of nucleotides?
What contributes to the high potential energy of nucleotides?
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In bacteria, how many locations does DNA replication take place?
In bacteria, how many locations does DNA replication take place?
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In humans, how many locations does DNA replication take place?
In humans, how many locations does DNA replication take place?
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What is the role of the primer in DNA synthesis?
What is the role of the primer in DNA synthesis?
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Give an example of a DNA sequence and its corresponding RNA primer.
Give an example of a DNA sequence and its corresponding RNA primer.
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What is the function of DNA polymerase?
What is the function of DNA polymerase?
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How does DNA polymerase ensure accuracy in DNA replication?
How does DNA polymerase ensure accuracy in DNA replication?
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How does DNA polymerase recognize a mistake during DNA synthesis?
How does DNA polymerase recognize a mistake during DNA synthesis?
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What is the role of primase in DNA replication?
What is the role of primase in DNA replication?
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What is the composition of the primer?
What is the composition of the primer?
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What is the function of DNA ligase in DNA replication?
What is the function of DNA ligase in DNA replication?
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What is the function of DNA helicase?
What is the function of DNA helicase?
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What is the role of single-stranded DNA binding proteins (SSBPs) in DNA replication?
What is the role of single-stranded DNA binding proteins (SSBPs) in DNA replication?
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What is the function of topoisomerase in DNA replication?
What is the function of topoisomerase in DNA replication?
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What is the replisome?
What is the replisome?
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What is the function of the sliding clamp in DNA replication?
What is the function of the sliding clamp in DNA replication?
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What is the role of telomerase in DNA replication?
What is the role of telomerase in DNA replication?
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Why does telomere length shorten with age?
Why does telomere length shorten with age?
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How does UV damage DNA?
How does UV damage DNA?
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What is nucleotide excision repair?
What is nucleotide excision repair?
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Where does transcription (DNA to RNA) occur in eukaryotic cells?
Where does transcription (DNA to RNA) occur in eukaryotic cells?
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Where does translation (RNA to protein) occur?
Where does translation (RNA to protein) occur?
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How many RNA polymerases do prokaryotes have?
How many RNA polymerases do prokaryotes have?
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What is the difference between DNA and RNA synthesis?
What is the difference between DNA and RNA synthesis?
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What is the importance of having multiple types of RNA (mRNA, tRNA, etc.)?
What is the importance of having multiple types of RNA (mRNA, tRNA, etc.)?
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Where does protein synthesis occur?
Where does protein synthesis occur?
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How many bases make up a codon?
How many bases make up a codon?
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Why do we need three bases to make a codon?
Why do we need three bases to make a codon?
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What is a deletion mutation?
What is a deletion mutation?
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What is a point mutation?
What is a point mutation?
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What is a missense mutation?
What is a missense mutation?
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What is a frameshift mutation?
What is a frameshift mutation?
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What is the function of the AUG codon?
What is the function of the AUG codon?
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What is the role of the promoter and terminator in gene expression?
What is the role of the promoter and terminator in gene expression?
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Why are frameshift mutations generally more detrimental than codon deletions?
Why are frameshift mutations generally more detrimental than codon deletions?
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What is the significance of the TATTA box in gene regulation?
What is the significance of the TATTA box in gene regulation?
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What is the difference between transcription and translation in prokaryotes and eukaryotes?
What is the difference between transcription and translation in prokaryotes and eukaryotes?
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How does the primary transcript in a eukaryotic cell differ from a functional mature mRNA?
How does the primary transcript in a eukaryotic cell differ from a functional mature mRNA?
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What are the key steps in RNA processing?
What are the key steps in RNA processing?
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What is the role of the spliceosome?
What is the role of the spliceosome?
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What does tRNA do during translation?
What does tRNA do during translation?
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What are the three sites in the ribosome during translation?
What are the three sites in the ribosome during translation?
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What are the steps in the translation process?
What are the steps in the translation process?
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What are the key post-translational modifications?
What are the key post-translational modifications?
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Study Notes
DNA Structure and Replication
- Base Pairing: Adenine bonds with Thymine (2 bonds), Guanine with Cytosine (3 bonds).
- DNA Tagging: Proteins are tagged with sulfur, DNA with phosphate.
- DNA Replication: Semi-conservative, meaning each new DNA molecule has one original and one newly synthesized strand.
DNA Replication Energy
- Endergonic Synthesis: DNA synthesis requires energy due to negatively charged phosphates repelling each other.
DNA Replication Location
- Bacteria: Replicates in one location.
- Humans: Replicates in multiple locations.
DNA Replication Process
- Primer: RNA primer provides a starting point for DNA polymerase.
- DNA Polymerase: Enzyme that assembles nucleotides, proofreads, and corrects errors (5' to 3').
- Primase: Creates RNA primers.
- Ligase: Glues Okazaki fragments together.
- Helicase: Breaks hydrogen bonds between DNA strands.
- SSBPs: Prevent separated strands from rejoining.
- Topoisomerase: Relieves tension caused by unwinding DNA.
DNA Replication Enzymes
- DNA Polymerase : Assembles nucleotides; proofreads.
- Primase : Creates RNA primer.
- Ligase : Glues Okazaki fragments.
- Helicase : Unwinds DNA.
- SSBPs : Stabilize single-stranded DNA.
- Topoisomerase : Relieves DNA supercoiling.
DNA Replication Process: Leading and Lagging Strands
- Okazaki Fragments are short DNA fragments created during replication of the lagging strand.
- Lagging strand synthesizes discontinuously. Okazaki fragments are created, then joined to form the whole lagging strand.
Telomeres
- Located at the ends of chromosomes
- Shorten with age
- Composed of repeating sequences of DNA
DNA Damage and Repair
- UV Damage: Creates thymine dimers, causing structural kinks.
- Nucleotide Excision Repair: Damaged nucleotides are replaced with proper ones.
Transcription and RNA
- Location: Nucleus
- Enzyme: RNA polymerase -RNA polymerase doesn't need a primer.
Protein Synthesis
- Location: Ribosomes.
- Codon length: 3 bases
- Number of amino acids: 20
- Codons required to code for amino acids: 64
- Mutational Effects
- Deletion mutation: Detrimental, no protein function
- Addition mutation: Detrimental, no protein function
- Point mutation: Impact varies by location
Gene Expression Differences Between Eukaryotes and Prokaryotes
- Transcription and translation happen at the same time in prokaryotes but not in eukaryotes.
mRNA Processing in Eukaryotes
- Introns: Non-coding regions removed from the mRNA transcript.
- Exons: Coding regions that remain in the mRNA.
- Processing: Splicing, 5' cap, and 3' poly-A tail are added to the mRNA.
tRNA
- Anticodons: Complementary to mRNA codons.
- Function: Translates mRNA codons into amino acids.
- tRNA sites in the ribosome : E site (Exit), P site (Peptidyl-tRNA), A site (Aminoacyl-tRNA).
Translation Steps
- Initiation: Ribosome binds to mRNA at the start codon.
- Elongation: tRNA brings amino acids to the A site. Peptide bonds form.
- Termination: Stop codons signal release of the ribosome from mRNA.
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Description
Test your knowledge on DNA structure and replication processes. This quiz covers key concepts including base pairing, DNA replication mechanisms, and the roles of various enzymes. Understand how DNA is replicated in different organisms and the energy requirements involved.