Podcast
Questions and Answers
What are spontaneous mutations primarily caused by?
What are spontaneous mutations primarily caused by?
- Mechanical damage to DNA
- Errors during DNA replication (correct)
- Environmental stressors
- Chemical mutagens
Which of the following contributes to the occurrence of strand-slippage during DNA replication?
Which of the following contributes to the occurrence of strand-slippage during DNA replication?
- Presence of base analogs
- Regions with small repeated sequences (correct)
- High temperatures during replication
- Regions with single nucleotide repeats
What type of shift leads to errors during DNA replication, potentially leading to mutations?
What type of shift leads to errors during DNA replication, potentially leading to mutations?
- Covalent modifications
- Hydrogen bonding alterations
- Base tautomerism (correct)
- Reverse transcription errors
Which of the following is NOT considered a physical mutagen?
Which of the following is NOT considered a physical mutagen?
How can mutations potentially affect an organism if not repaired?
How can mutations potentially affect an organism if not repaired?
What is the result of heat causing detachment of bases in nucleotides?
What is the result of heat causing detachment of bases in nucleotides?
Which mutagen causes base dimerization in DNA?
Which mutagen causes base dimerization in DNA?
What effect does deamination of cytosine have on DNA replication?
What effect does deamination of cytosine have on DNA replication?
Which of the following is an example of an intercalating agent?
Which of the following is an example of an intercalating agent?
What is a consequence of deaminating agents on adenine?
What is a consequence of deaminating agents on adenine?
What is the result of deamination of adenine in DNA?
What is the result of deamination of adenine in DNA?
Which tautomer of adenine can pair with cytosine instead of thymine?
Which tautomer of adenine can pair with cytosine instead of thymine?
How does 5-bromouracil induce mutations during DNA replication?
How does 5-bromouracil induce mutations during DNA replication?
What effect do deaminating agents have on cytosine?
What effect do deaminating agents have on cytosine?
What is a characteristic of intercalating agents?
What is a characteristic of intercalating agents?
What type of mutation is primarily caused by alkylating agents?
What type of mutation is primarily caused by alkylating agents?
Which of the following statements regarding UV radiation is true?
Which of the following statements regarding UV radiation is true?
Which base analog mimics thymine in DNA?
Which base analog mimics thymine in DNA?
What type of mutation does hypoxanthine cause when it pairs with C?
What type of mutation does hypoxanthine cause when it pairs with C?
What is a significant consequence of the keto form of thymine during replication?
What is a significant consequence of the keto form of thymine during replication?
What distinguishes the endonuclease function in human mismatch repair from that in E. coli?
What distinguishes the endonuclease function in human mismatch repair from that in E. coli?
What role do telomeres play in the context of nonhomologous end joining?
What role do telomeres play in the context of nonhomologous end joining?
Which repair mechanism is not methylation-influenced in humans?
Which repair mechanism is not methylation-influenced in humans?
What is a significant risk factor for individuals with Xeroderma pigmentosum (XP)?
What is a significant risk factor for individuals with Xeroderma pigmentosum (XP)?
How does the function of DNA ligase relate to nonhomologous end joining?
How does the function of DNA ligase relate to nonhomologous end joining?
What is the initial step in base excision repair in E.coli?
What is the initial step in base excision repair in E.coli?
What causes an apurinic/apyrimidinic (AP) site in DNA?
What causes an apurinic/apyrimidinic (AP) site in DNA?
Which enzyme is involved in nucleotide excision repair in E.coli?
Which enzyme is involved in nucleotide excision repair in E.coli?
How does E.coli distinguish between the parent strand and the daughter strand during mismatch repair?
How does E.coli distinguish between the parent strand and the daughter strand during mismatch repair?
Which repair mechanism directly involves recognition of mismatches by specific enzymes?
Which repair mechanism directly involves recognition of mismatches by specific enzymes?
What is the consequence of deamination of adenine in DNA?
What is the consequence of deamination of adenine in DNA?
Which of the following is a potential effect of intercalating agents on DNA?
Which of the following is a potential effect of intercalating agents on DNA?
In E.coli, what mechanism is primarily utilized to correct errors during DNA replication?
In E.coli, what mechanism is primarily utilized to correct errors during DNA replication?
What is a common consequence of inadequate DNA repair mechanisms?
What is a common consequence of inadequate DNA repair mechanisms?
Which repair method involves the removal of a single altered base in DNA?
Which repair method involves the removal of a single altered base in DNA?
What is the role of the MGMT enzyme in DNA repair?
What is the role of the MGMT enzyme in DNA repair?
Why is ultraviolet (UV) radiation particularly hazardous for humans?
Why is ultraviolet (UV) radiation particularly hazardous for humans?
Which of the following best describes alkylating agents?
Which of the following best describes alkylating agents?
What type of mutation is often associated with the action of intercalating agents?
What type of mutation is often associated with the action of intercalating agents?
Which of the following can result from the action of deaminating agents on cytosine?
Which of the following can result from the action of deaminating agents on cytosine?
What is the approximate frequency of DNA lesions occurring in human cells daily?
What is the approximate frequency of DNA lesions occurring in human cells daily?
Flashcards
DNA Mutation
DNA Mutation
A permanent change in the nucleotide sequence of a DNA molecule.
Spontaneous Mutations
Spontaneous Mutations
Mutations that arise from errors during DNA replication.
Replication Errors
Replication Errors
DNA polymerases can make mistakes during replication, leading to changes in the DNA sequence.
Strand-Slippage
Strand-Slippage
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Tautomeric Shift
Tautomeric Shift
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Tautomers
Tautomers
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Mutation
Mutation
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Mutagens
Mutagens
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Base analog
Base analog
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5-Bromouracil (5bU)
5-Bromouracil (5bU)
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Deamination
Deamination
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Nitrous acid
Nitrous acid
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Alkylating agents
Alkylating agents
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Intercalating agents
Intercalating agents
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What is an AP site?
What is an AP site?
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What are intercalating agents?
What are intercalating agents?
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What are alkylating agents?
What are alkylating agents?
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What are thymine dimers?
What are thymine dimers?
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What happens when cytosine is deaminated?
What happens when cytosine is deaminated?
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Mismatch repair
Mismatch repair
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Nonhomologous end joining
Nonhomologous end joining
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Xeroderma pigmentosum (XP)
Xeroderma pigmentosum (XP)
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Telomeres
Telomeres
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MutS like proteins
MutS like proteins
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Direct Repair
Direct Repair
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Excision Repair
Excision Repair
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Base Excision Repair
Base Excision Repair
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Nucleotide Excision Repair
Nucleotide Excision Repair
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Nonhomologous End Joining (NHEJ)
Nonhomologous End Joining (NHEJ)
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Diseases Caused by Defective DNA Repair
Diseases Caused by Defective DNA Repair
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Why is DNA Repair Important?
Why is DNA Repair Important?
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What is base excision repair?
What is base excision repair?
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What is nucleotide excision repair?
What is nucleotide excision repair?
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What is mismatch repair?
What is mismatch repair?
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What is UvrABC endonuclease?
What is UvrABC endonuclease?
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What does the MutS enzyme do in E. coli?
What does the MutS enzyme do in E. coli?
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What does the MutH enzyme do in E. coli?
What does the MutH enzyme do in E. coli?
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What is the replication period?
What is the replication period?
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Study Notes
DNA Mutation Causes
- A mutation is a change in the nucleotide sequence of a DNA molecule.
- Mutations can occur due to errors during DNA replication or from mutagens.
Spontaneous Mutations
- Some mutations result from errors during DNA replication.
- These errors are called spontaneous mutations.
- DNA polymerases typically have proofreading abilities to prevent errors, but sometimes mistakes still occur.
- Strand slippage is a type of replication error.
- This is particularly common in regions with repeating sequences. Replication errors can cause either an extra nucleotide or a missing nucleotide on the new DNA strand.
- Base tautomerism, where a base exists in a different isomeric form, can also cause errors by pairing with the incorrect base during replication. The altered base pairs with a different base than it normally would, leading to a mutation.
Mutagens and Their Effects
- Mutagens (chemical or environmental agents) change DNA structures.
- Base analogs (like 5-bromouracil) mimic natural bases, causing incorrect base pairings and mutations during replication. 5-bromouracil is a thymine analog and can pair with adenine instead of thymine. The enol form of 5-bromouracil is more common and incorrectly pairs with guanine.
- Deaminating agents (like nitrous acid and sodium bisulphite) alter some nucleotide structures, causing mispairing. Deamination of adenine produces hypoxanthine which pairs with cytosine instead of thymine. Cytosine deamination produces uracil, pairing with adenine instead of guanine. Guanine deamination creates xanthine, which blocks DNA replication.
- Alkylating agents (e.g. ethylmethane sulphonate) add alkyl groups to nucleotides, leading to transition mutations.
- Intercalating agents (e.g. ethidium bromide) insert between base pairs, causing insertion mutations.
- Ultraviolet radiation causes base dimerization (e.g., thymine dimers), which alters DNA structure.
- Heat causes detachment of bases which can cause an AP site. An AP site is an apurinic/apyrimidinic site, also known as an abasic site.
Damage Repair
- Understanding DNA damage is vital for prevention and repair mechanisms.
- The specific type and magnitude of DNA damage influence repair efficiency.
- Repair mechanisms exist for different types of DNA damage. Examples include direct repair, excision repair (base and nucleotide), mismatch repair, and non-homologous end joining. These each have specific steps.
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