Citric Acid Cycle Quiz

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Questions and Answers

What is the primary role of pyruvate in cellular respiration?

  • It is a substrate for oxidative phosphorylation.
  • It is the end product of the citric acid cycle.
  • It acts as an energy-rich molecule.
  • It links glycolysis and the citric acid cycle. (correct)

Which stage of cellular respiration involves the oxidation of acetyl groups to carbon dioxide?

  • Electron transfer chain
  • Glycolysis
  • Citric acid cycle (correct)
  • Lactic acid fermentation

What does the breakdown of acetyl-CoA in the citric acid cycle primarily produce?

  • GTP and CO2 only
  • NADH, FADH2, and one GTP (correct)
  • NADH and ATP only
  • Only high-energy intermediates

Why is the citric acid cycle considered a 'hub' of metabolism?

<p>It links catabolic and anabolic pathways. (D)</p> Signup and view all the answers

How does the body regulate the citric acid cycle?

<p>By means of allosteric and covalent mechanisms (B)</p> Signup and view all the answers

Which of the following pathways is NOT an output of the citric acid cycle?

<p>Glycolysis (C)</p> Signup and view all the answers

What is the significance of forming enzyme complexes in metabolism?

<p>To accomplish reactions without intermediate liberation (A)</p> Signup and view all the answers

What could be a consequence of mutations affecting the citric acid cycle?

<p>Tumor formation (A)</p> Signup and view all the answers

What is the main purpose of converting the methyl group of acetyl-CoA to a methylene group in the citric acid cycle?

<p>To enhance the reactivity for further enzymatic reactions (D)</p> Signup and view all the answers

Which of the following statements about the citric acid cycle is incorrect?

<p>Its sole function is energy conservation. (C)</p> Signup and view all the answers

What enzyme catalyzes the condensation of acetyl-CoA with oxaloacetate to form citrate?

<p>Citrate synthase (D)</p> Signup and view all the answers

What characterizes the citrate synthase reaction in the citric acid cycle?

<p>It involves the formation of citroyl-CoA as an intermediate. (A)</p> Signup and view all the answers

How does the binding of oxaloacetate affect citrate synthase?

<p>It triggers a change that facilitates acetyl-CoA binding. (A)</p> Signup and view all the answers

Which of the following processes is NOT involved in the citrate synthase step of the cycle?

<p>Formation of ATP (A)</p> Signup and view all the answers

In the context of the citric acid cycle, what does the term 'highly exergonic' refer to?

<p>A reaction that releases energy (A)</p> Signup and view all the answers

Which compound is NOT produced during the first complete turn of the citric acid cycle?

<p>Citroyl-CoA (B)</p> Signup and view all the answers

What is the primary function of the PDH complex in cellular metabolism?

<p>To catalyze the oxidation of pyruvate through decarboxylation (A)</p> Signup and view all the answers

Which enzyme in the PDH complex is responsible for the decarboxylation of pyruvate?

<p>Pyruvate dehydrogenase (C)</p> Signup and view all the answers

Which coenzyme is associated with lipoate in the PDH complex?

<p>Coenzyme A (CoA-SH) (B)</p> Signup and view all the answers

Which of the following statements about the PDH complex is accurate?

<p>It facilitates a series of chemical transformations without releasing intermediates. (D)</p> Signup and view all the answers

What role does lipoate play in the PDH complex?

<p>It is a coenzyme that can be reversibly oxidized. (C)</p> Signup and view all the answers

Which vitamin is NOT a coenzyme involved in the PDH complex?

<p>Vitamin C (C)</p> Signup and view all the answers

Why have enzymes evolved to form complexes like the PDH complex?

<p>To perform reactions efficiently without releasing intermediates (C)</p> Signup and view all the answers

How many different coenzymes does the PDH complex utilize?

<p>Five (D)</p> Signup and view all the answers

Which enzyme in the citric acid cycle is involved in substrate-level phosphorylation?

<p>succinyl-CoA synthetase (A)</p> Signup and view all the answers

Which of the following reactions in the citric acid cycle produces FADH2?

<p>Oxidation of succinate to fumarate (C)</p> Signup and view all the answers

Which statement is true regarding succinate dehydrogenase?

<p>It is an integral membrane protein. (B)</p> Signup and view all the answers

Which competitive inhibitor is known to inhibit succinate dehydrogenase?

<p>Malonate (B)</p> Signup and view all the answers

How does fumarase exhibit stereospecificity?

<p>It exclusively catalyzes the trans double bond of fumarate. (D)</p> Signup and view all the answers

What is the primary function of L-malate dehydrogenase in the citric acid cycle?

<p>To regenerate oxaloacetate from malate (A)</p> Signup and view all the answers

Which of the following statements regarding the PDH complex is incorrect?

<p>It converts acetyl-CoA to citrate. (C)</p> Signup and view all the answers

What is the approximate ATP yield from the complete oxidation of glucose to CO2 through the citric acid cycle?

<p>32 ATP (D)</p> Signup and view all the answers

What does the prefix amph- mean?

<p>Both kinds (C)</p> Signup and view all the answers

Which key molecule is conserved in the glyoxylate cycle but not in the citric acid cycle?

<p>Carbon dioxide (D)</p> Signup and view all the answers

How does the glyoxylate cycle differ from the citric acid cycle?

<p>It does not involve decarboxylation steps. (B)</p> Signup and view all the answers

What is the function of anaplerotic reactions?

<p>To replenish citric acid cycle intermediates. (B)</p> Signup and view all the answers

Which enzyme is NOT associated with anaplerotic reactions?

<p>Acetyl-CoA carboxylase (A)</p> Signup and view all the answers

In what metabolic roles do acetate groups from acetyl-CoA participate?

<p>In both catabolic and anabolic pathways (B)</p> Signup and view all the answers

What does the term 'cataplerotic reactions' refer to?

<p>Reactions that deplete cycle intermediates (B)</p> Signup and view all the answers

What is a defining characteristic of strains of aerobic organisms regarding the citric acid cycle?

<p>They use the citric acid cycle for both metabolic processes. (D)</p> Signup and view all the answers

Which enzymes are associated with tumors due to mutations?

<p>Succinate dehydrogenase and fumarase (D)</p> Signup and view all the answers

What ability is gained by mutant NADPH-dependent isocitrate dehydrogenase?

<p>Converting α-ketoglutarate to 2-hydroxyglutarate (A)</p> Signup and view all the answers

What are metabolons described as?

<p>Integrated multienzyme complexes held together by noncovalent interactions (B)</p> Signup and view all the answers

Which intermediates play a role in the function of metabolons?

<p>Metabolic intermediates that enhance enzyme activity (A)</p> Signup and view all the answers

What occurs within metabolons to ensure metabolic efficiency?

<p>Efficient passage of the product of one enzyme to the next enzyme in the pathway (D)</p> Signup and view all the answers

Flashcards

What is the Citric Acid Cycle?

The process of breaking down pyruvate into carbon dioxide, water, and energy (ATP) in the form of NADH and FADH2.

What are the other names for the Citric Acid Cycle?

The Citric Acid Cycle is also known as the Krebs Cycle and the TCA cycle.

How does the Citric Acid Cycle work?

The Citric Acid Cycle is a cyclic series of reactions that oxidizes acetyl-CoA to CO2 and H2O, generating energy in the form of ATP, NADH, and FADH2.

What is the importance of the Citric Acid Cycle?

The Citric Acid Cycle is a central metabolic pathway, linking catabolic and anabolic pathways, meaning it can both break down and build up molecules.

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How is the Citric Acid Cycle regulated?

The Citric Acid Cycle is regulated by both allosteric and covalent mechanisms to control its activity in coordination with other pathways in the cell.

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What are the main products of the Citric Acid Cycle?

The Citric Acid Cycle generates ATP, NADH, and FADH2, which are crucial for energy production in the cell.

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How is the Citric Acid Cycle connected to glycolysis?

The Citric Acid Cycle is closely linked to glycolysis, with pyruvate as the key intermediate that connects the two pathways.

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How do enzymes work in the Citric Acid Cycle?

Enzymes in the Citric Acid Cycle work together in a complex to efficiently catalyze a series of reactions, ensuring smooth and efficient energy production.

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Oxidative Decarboxylation

An irreversible oxidation process that removes the carboxyl group (COOH) from a molecule, releasing carbon dioxide (CO2) as a byproduct.

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Pyruvate Dehydrogenase Complex (PDH)

The pyruvate dehydrogenase complex (PDH) is a group of enzymes that catalyzes the conversion of pyruvate to acetyl-CoA. It is a key step in cellular respiration, linking glycolysis to the citric acid cycle.

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Lipoate

Lipoate is a coenzyme that acts as both an electron and acyl carrier. It's attached to the E2 enzyme in the PDH complex.

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Thiamine Pyrophosphate (TPP)

Thiamine pyrophosphate (TPP) is a coenzyme derived from vitamin B1 (thiamine) and is essential for the activity of the PDH complex.

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Coenzyme A (CoA)

Coenzyme A (CoA) is a coenzyme derived from pantothenic acid (vitamin B5) and plays a crucial role in the PDH complex by carrying acetyl groups.

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Flavin Adenine Dinucleotide (FAD)

Flavin adenine dinucleotide (FAD) is a coenzyme derived from riboflavin (vitamin B2) and is essential for the activity of the PDH complex.

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Nicotinamide Adenine Dinucleotide (NAD)

Nicotinamide adenine dinucleotide (NAD) is a coenzyme derived from niacin (vitamin B3) and is essential for the activity of the PDH complex.

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Enzyme Complexes for Efficiency

Enzymes often assemble into complexes to enhance efficiency. This strategy, seen in the PDH complex, allows for a series of reactions to occur smoothly without intermediates escaping into the cell.

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Succinyl-CoA Synthetase

An enzyme in the citric acid cycle that catalyzes the conversion of succinyl-CoA to succinate, generating ATP (or GTP) through substrate-level phosphorylation.

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Substrate-Level Phosphorylation

A chemical reaction in metabolism where ATP is produced directly from an energy-rich substrate, without the need for an electron transport chain.

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Succinate Dehydrogenase

A component of the citric acid cycle that catalyzes the oxidation of succinate to fumarate, using FAD as an electron acceptor.

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Malonate

A potent competitive inhibitor of succinate dehydrogenase, structurally similar to succinate but unable to be metabolized.

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Oxidation of Succinate to Fumarate

The reaction in the citric acid cycle where FADH2 is produced, catalyzed by succinate dehydrogenase.

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Fumarase

An enzyme in the citric acid cycle that catalyzes the reversible hydration of fumarate to L-malate.

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Oxidation of Malate to Oxaloacetate

The last step in the citric acid cycle where L-malate is oxidized to oxaloacetate, regenerating the starting compound for the cycle.

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L-Malate Dehydrogenase

The enzyme that catalyzes the oxidation of L-malate to oxaloacetate, using NAD+ as an electron acceptor.

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What is the primary role of the Citric Acid Cycle?

The Citric Acid Cycle is a central metabolic pathway that plays a crucial role in cellular respiration, not just energy conservation. It involves the breakdown of acetyl-CoA to generate energy carriers like NADH, FADH2, and ATP.

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Do the carbon atoms from acetyl-CoA leave the cycle as CO2 in the first turn?

In the first turn of the Citric Acid Cycle, the carbon atoms from acetyl-CoA do not leave the cycle as CO2. They are incorporated into other molecules and will eventually be released in subsequent turns.

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Where does the Citric Acid Cycle occur?

The Citric Acid Cycle takes place in the mitochondria of eukaryotic cells. The mitochondria are often referred to as the 'powerhouses' of the cell.

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What is the first step of the Citric Acid Cycle?

The Citric Acid Cycle begins with the condensation reaction of acetyl-CoA and oxaloacetate, catalyzed by citrate synthase. This step involves the formation of a transient intermediate called citroyl-CoA.

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What is the chemical logic behind the conversion of the methyl group of acetyl-CoA?

The conversion of the relatively unreactive methyl group of acetyl-CoA to a more reactive methylene group is a crucial step in the Citric Acid Cycle. This conversion is essential for the subsequent oxidation reactions.

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What drives the citrate synthase reaction forward?

The large, negative ΔG'° value of the citrate synthase reaction is driven by the low concentration of oxaloacetate. This ensures the reaction proceeds in the forward direction.

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Describe the induced fit mechanism of Citrate Synthase.

Citrate synthase is an enzyme that undergoes a conformational change upon binding oxaloacetate. This creates a binding site for acetyl-CoA, promoting the formation of citroyl-CoA.

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What type of catalysis does Citrate synthase use?

The Citrate synthase reaction involves acid-base catalysis. This mechanism utilizes acidic and basic amino acid residues in the enzyme's active site to facilitate the reaction.

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Amphibolic Pathway

A metabolic pathway that serves both catabolic and anabolic processes. It breaks down molecules for energy but also builds new molecules for growth and repair. An example is the citric acid cycle.

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Citric Acid Cycle

A metabolic pathway involved in the catabolism of carbohydrates, fatty acids, and proteins. It generates energy through the oxidation of acetyl-CoA.

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Glyoxylate Cycle

A metabolic pathway found in plants, bacteria, and fungi that conserves carbon dioxide during the breakdown of fatty acids. This allows the organism to produce more glucose.

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Key Difference: Citric Acid Cycle vs. Glyoxylate Cycle

The glyoxylate cycle conserves carbon dioxide, whereas the citric acid cycle releases it as a waste product. This allows the glyoxylate cycle to produce glucose from fatty acids.

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Anaplerotic Reactions

Biochemical reactions that replenish intermediates of the citric acid cycle, allowing the cycle to continue operating efficiently.

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Pyruvate Carboxylase

An enzyme that catalyzes the conversion of pyruvate to oxaloacetate, replenishing an important intermediate of the citric acid cycle.

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PEP Carboxykinase

An enzyme that catalyzes the conversion of phosphoenolpyruvate (PEP) to oxaloacetate, another important anaplerotic reaction.

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Succinate Carboxykinase

An enzyme involved in the conversion of succinyl-CoA to oxaloacetate, another anaplerotic reaction that replenishes the citric acid cycle.

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Tumor Suppressor Enzymes

Mutations in succinate dehydrogenase or fumarase, two key enzymes in the Citric Acid Cycle, can disrupt the cycle and lead to the abnormal growth of cells, causing tumors. This makes these mutated enzymes act as tumor suppressors.

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NADPH-dependent Isocitrate Dehydrogenase and Tumors

NADPH-dependent isocitrate dehydrogenase is an enzyme that converts isocitrate to α-ketoglutarate in the Citric Acid Cycle. Mutations in this enzyme can cause tumors by changing its function, leading to the production of 2-hydroxyglutarate, disrupting the normal cell processes.

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What are metabolons?

Metabolons are multienzyme complexes that work together in a coordinated way, ensuring that the products of one enzyme reaction are quickly and efficiently passed on to the next enzyme in the pathway. This creates a smoothly functioning metabolic "machine."

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Metabolon in the Citric Acid Cycle

Malate dehydrogenase, citrate synthase, and aconitase are important enzymes in the Citric Acid Cycle. These three enzymes likely work together as a metabolon, forming a coordinated complex that enhances the efficiency of the Citric Acid Cycle.

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Metabolon function

Metabolons are multienzyme complexes, providing direct and efficient pathways for metabolic intermediates, ensuring a smooth flow of reactions within a metabolic pathway.

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Study Notes

Cellular Respiration

  • Cellular respiration is the process where pyruvate, produced by glycolysis, is further oxidized to form water (H₂O) and carbon dioxide (CO₂).

Stage 1 of Cellular Respiration

  • Stage 1 involves the oxidation of fuels to acetyl-CoA.
  • This stage generates ATP, NADH, and FADH₂.
  • Fuels include amino acids, fatty acids, and glucose.

Stage 2 of Cellular Respiration

  • Stage 2 involves the oxidation of acetyl groups to CO₂ in the citric acid cycle (tricarboxylic acid (TCA) cycle, Krebs cycle).
  • This pathway is nearly universal in cells.
  • It generates NADH, FADH₂, and GTP.

Stage 3 of Cellular Respiration

  • Stage 3 involves electron transfer chain and oxidative phosphorylation.
  • This stage generates the majority of ATP from catabolism.

Principle 1

  • Pyruvate links glycolysis and the citric acid cycle.
  • Pyruvate's rate of partitioning affects catabolic activity.

Principle 2

  • Citric acid cycle reactions follow a chemical logic.
  • The cycle oxidizes acetyl-CoA to CO₂ and H₂O.
  • The cycle's energy drives ATP synthesis.
  • Strategies for activating groups for oxidation and conserving energy are used in other metabolic pathways.

Principle 3

  • The citric acid cycle is a hub of metabolism.
  • Catabolic pathways lead into it, while anabolic pathways lead out.
  • Acetate groups are used in synthesizing amino acids, fatty acids, and sterols.
  • Nucleotides and amino acid breakdown products are intermediates in the cycle.

Principle 4

  • The citric acid cycle's central role in metabolism requires regulation.
  • Regulation occurs through allosteric and covalent mechanisms.
  • These mechanisms maintain homeostasis.
  • Some mutations in cycle reactions can cause tumor formation.

Principle 5

  • Enzymes form complexes to efficiently transform intermediates without releasing them into the bulk solvent.
  • This strategy is ubiquitous in other metabolic pathways, respiration, and informational macromolecules.

Production of Acetyl-CoA

  • Coenzyme A (CoA-SH) is a critical acyl carrier.
  • The -SH group forms a thioester with acetate in acetyl-CoA.

Pyruvate Oxidation

  • Mitochondrial pyruvate carrier (MPC) facilitates pyruvate transport into the mitochondrial membrane.
  • Pyruvate dehydrogenase (PDH) complex oxidizes pyruvate to acetyl-CoA and CO₂ in the mitochondrial matrix.
  • The chemical intermediates remain bound to the enzyme subunits.
  • Regulation results in precisely controlled flux.

PDH Complex

  • The PDH complex employs three enzymes (E₁, E₂, E₃) and five coenzymes.
  • These are thiamine pyrophosphate (TPP), lipoate, coenzyme A (CoA), flavin adenine dinucleotide (FAD), and nicotinamide adenine dinucleotide (NAD).
  • Lipoate acts as an electron (hydrogen) carrier and acyl carrier.
  • The complex is a highly organized cluster in the mitochondrial matrix.

PDH Complex Mechanisms

  • Oxidative decarboxylation is an irreversible process where the carboxyl group is removed, resulting in the formation of CO₂.
  • This process involves steps 1 and 2.
  • Steps 3—5 involve dihydrolipoyl transacetylase and dehydrogenase.

Citric Acid Cycle Reactions

  • One oxaloacetate molecule can theoretically oxidize an infinite number of acetyl groups.
  • Energy from the four oxidations is conserved as NADH and FADH₂.

Formation of Citrate

  • Citrate synthase catalyzes the condensation of acetyl-CoA with oxaloacetate to form citrate.
  • Citroyl-CoA is an intermediate.
  • A large, negative ∆G'° is needed due to the typically low concentration of oxaloacetate.

Citrate Synthase Structure

  • Oxaloacetate binding creates a binding site for acetyl-CoA.
  • Induced fit decreases the likelihood of premature cleavage of the thioester bond of acetyl-CoA.

Mechanism of Citrate Synthase

  • His 274 and Asp375 are acid-base catalysts in this step.

Oxidation of Isocitrate

  • Isocitrate dehydrogenase catalyzes the oxidative decarboxylation of isocitrate to α-ketoglutarate.

Oxidation of α-Ketoglutarate

  • α-ketoglutarate dehydrogenase complex catalyzes the oxidative decarboxylation of α-ketoglutarate to succinyl-CoA.

Conversion of Succinyl-CoA

  • Succinyl-CoA synthetase (succinic thiokinase) catalyzes the breakage of the thioester bond of succinyl-CoA to form succinate.
  • Energy release drives GTP or ATP synthesis (substrate-level phosphorylation).

Succinyl-CoA Synthetase Reaction

  • The enzyme molecule becomes phosphorylated at a His residue in the active site.
  • The phosphoryl group is transferred to ADP or GDP to form ATP or GTP.
  • Animal cells contain different isozymes.

Nucleoside Diphosphate Kinase

  • Nucleoside diphosphate kinase catalyzes reversible conversion of GTP and ATP.

Succinate Oxidation

  • Succinate dehydrogenase, a flavoprotein, catalyzes the reversible oxidation of succinate to fumarate.
  • It is an integral protein of the mitochondrial inner membrane and contains iron-sulfur clusters and FAD.

Malate Oxidation

  • L-malate dehydrogenase catalyzes the oxidation of L-malate to oxaloacetate, coupled to the reduction of NAD+.

Citric Acid Cycle Regulation

  • Regulation balances the supply of key intermediates with energy production and biosynthetic processes.
  • Regulation occurs at the PDH complex, citrate synthase, isocitrate dehydrogenase complex, and α-ketoglutarate dehydrogenase complex.

Citric Acid Cycle and Tumours

  • Mutations in the PDH complex or citric acid cycle enzymes can be oncogenic.
  • Oncometabolites stimulate tumor growth.

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