Podcast
Questions and Answers
Which of the following best describes the function of Cas9 in the original CRISPR-Cas9 system?
Which of the following best describes the function of Cas9 in the original CRISPR-Cas9 system?
- It serves as a template for synthesizing viral DNA.
- It matches viral DNA to facilitate immune response.
- It is a nuclease that cuts DNA. (correct)
- It holds CRISPR RNA in place.
In gene therapy, what is the primary role of a vector?
In gene therapy, what is the primary role of a vector?
- To remove the malfunctioning gene from the cell.
- To penetrate the cell membrane directly.
- To deliver the correct gene into the right cell and tissues. (correct)
- To replicate the malfunctioning gene.
Which characteristic makes a genetic condition a good candidate for gene therapy?
Which characteristic makes a genetic condition a good candidate for gene therapy?
- When the mutation is caused by a single gene. (correct)
- When the mutated gene is dominant.
- When the condition is influenced by environmental factors.
- When the condition is caused by multiple genes.
What distinguishes genome editing from traditional drug-based approaches?
What distinguishes genome editing from traditional drug-based approaches?
If gene editing is performed on stem cells, what is the expected outcome?
If gene editing is performed on stem cells, what is the expected outcome?
For therapeutic cloning to be effective, what is the primary goal?
For therapeutic cloning to be effective, what is the primary goal?
What is the function of CRISPR RNA in the modified CRISPR-Cas9 system?
What is the function of CRISPR RNA in the modified CRISPR-Cas9 system?
In Somatic Cell Nuclear Transfer (SCNT), why are somatic cells, not gametes (sperm/egg), used?
In Somatic Cell Nuclear Transfer (SCNT), why are somatic cells, not gametes (sperm/egg), used?
For a gene that codes for a protein, what happens if the protein is not functioning properly?
For a gene that codes for a protein, what happens if the protein is not functioning properly?
What is pre-implantation diagnosis (PGD) primarily used for in reproductive technology?
What is pre-implantation diagnosis (PGD) primarily used for in reproductive technology?
In the context of gene therapy, what does 'ex vivo' mean?
In the context of gene therapy, what does 'ex vivo' mean?
Why is it important to understand the biology of a disorder when considering gene therapy?
Why is it important to understand the biology of a disorder when considering gene therapy?
Which of the following is true about 'Artificial Embryo Twinning'?
Which of the following is true about 'Artificial Embryo Twinning'?
In Cystic Fibrosis, a good candidate for gene therapy, what happens if the gene is mutated?
In Cystic Fibrosis, a good candidate for gene therapy, what happens if the gene is mutated?
Which of the following is true about 'repeat' segments of DNA in CRISPR?
Which of the following is true about 'repeat' segments of DNA in CRISPR?
Flashcards
Gene therapy
Gene therapy
To penetrate cells and replace, repair or remove genes that are malfunctioning
Genome editing
Genome editing
Cut DNA to replace mutated genes in stem cells to develop/produce healthy cells.
Genes code for proteins
Genes code for proteins
If a correct functioning protein is coded, then cure disorder. If protein isn't functioning, genetic disorder
Vectors in gene therapy
Vectors in gene therapy
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Ex vivo gene therapy
Ex vivo gene therapy
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Good candidate for gene therapy
Good candidate for gene therapy
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Cystic Fibrosis
Cystic Fibrosis
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Base pair deletion
Base pair deletion
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Somatic Cell Nuclear Transfer
Somatic Cell Nuclear Transfer
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Clones
Clones
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Artificial Embryo Twinning
Artificial Embryo Twinning
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CRISPR
CRISPR
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The CRISPR System
The CRISPR System
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Cas genes
Cas genes
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In Vitro Fertilization (IVF)
In Vitro Fertilization (IVF)
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Study Notes
Chemical Kinetics: Reaction Rate
- Rate of reaction is the rate of decrease in reactant concentration or the rate of increase in product concentration
- For a reaction $A + B \rightarrow C + D$, the rate r is given by $r = -\frac{d[A]}{dt} = -\frac{d[B]}{dt} = \frac{d[C]}{dt} = \frac{d[D]}{dt}$.
Chemical Kinetics: Average Rate
- Average rate $r_{av}$ is expressed as $r_{av} = -\frac{\Delta[R]}{\Delta t} = \frac{\Delta[P]}{\Delta t}$
Chemical Kinetics: Instantaneous Rate
- Instantaneous rate $r_{inst}$ is expressed as $r_{inst} = \lim_{\Delta t \to 0} -\frac{\Delta[R]}{\Delta t} = \lim_{\Delta t \to 0} \frac{\Delta[P]}{\Delta t}$.
- $r_{inst}$ can also be written as $r_{inst} = -\frac{d[R]}{dt} = \frac{d[P]}{dt}$
Chemical Kinetics: Rate Law Expression
- For a reaction $aA + bB \rightarrow cC + dD$, the rate r is proportional to $[A]^x [B]^y$.
- The rate law is given by $r = k[A]^x [B]^y$, where k is the rate constant, [A] and [B] are reactant concentrations, x and y are orders with respect to A and B, respectively, and (x + y) is the overall order of reaction.
- x and y must be determined experimentally and may not be equal to the stoichiometric coefficients a and b.
Chemical Kinetics: Units of Rate Constant
- The rate constant k can be expressed as $k = \frac{r}{[A]^x [B]^y}$.
- $k = \frac{mol : L^{-1} s^{-1}}{(mol : L^{-1})^n}$ leading to $k = mol^{1-n} L^{n-1} s^{-1}$, where n is the order of reaction.
- For a zeroth-order reaction, the units of k are $mol : L^{-1} s^{-1}$.
- For a first-order reaction, the units of k are $s^{-1}$.
- For a second-order reaction, the units of k are $mol^{-1} L s^{-1}$.
- For a third-order reaction, the units of k are $mol^{-2} L^2 s^{-1}$.
- For an nth-order reaction, the units of k are $mol^{1-n} L^{n-1} s^{-1}$.
Chemical Kinetics: Factors Affecting Reaction Rate
- Concentration, temperature, and catalysts affect reaction rate.
Chemical Kinetics: Zero Order Reaction
- The rate law is $r = k[A]^0 = k$.
- The differential rate equation is $-\frac{d[R]}{dt} = k$.
- The integrated rate law is $[R]_t = -kt + [R]_0$, where $[R]_0$ is the initial concentration.
- Half life is $t_{1/2} = \frac{[R]_0}{2k}$.
Chemical Kinetics: First Order Reaction
- The rate law is $r = k[A]^1 = k[A]$.
- The differential rate equation is $-\frac{d[R]}{dt} = k[R]$.
- The integrated rate law is $k = \frac{2.303}{t} log \frac{[R]_0}{[R]_t}$.
- Half life is $t_{1/2} = \frac{0.693}{k}$.
Chemical Kinetics: Pseudo First Order Reaction
- For the reaction $CH_3COOC_2H_5 + H_2O \xrightarrow{H^+} CH_3COOH + C_2H_5OH$, the rate is $r = k[CH_3COOC_2H_5][H_2O]$.
- Since $[H_2O]$ is constant, $r = k'[CH_3COOC_2H_5]$, where $k' = k[H_2O]$.
Chemical Kinetics: Arrhenius Equation
- The Arrhenius equation is $k = Ae^{-E_a/RT}$, where $E_a$ is activation energy, R is the gas constant ($8.314 : J K^{-1} mol^{-1}$), A is the Arrhenius factor, and T is temperature.
- Determining the relationship between two temperatures and rate constants is done with $\log \frac{k_2}{k_1} = \frac{E_a}{2.303R} [\frac{1}{T_1} - \frac{1}{T_2}]$.
Chemical Kinetics: Effect of Catalyst
- A catalyst increases the rate of a reaction without getting consumed
- Catalysts work by providing an alternative pathway or reaction mechanism to lowering the activation energy between reactants and products
Plan d'action ministériel en développement durable 2024-2027: Message de la ministre
- Sustainable development forms the core concern and guides actions for a future where the environment is protected, the economy is prosperous, and society is equitable.
- The Plan d'action ministériel en développement durable 2024-2027 demonstrates on commitment to include principles of sustainable development in all activities.
- The plan was built around specific, clear, actions to progress for a more green and prosperous quebec.
- Dedicated to meet environmental, economic, and social challenges.
Plan d'action ministériel en développement durable 2024-2027: Table des matières
- The table of contents includes a presentation, issues and orientations, objectives and measures, and governance, monitoring and accountability
Plan d'action ministériel en développement durable 2024-2027: Présentation
- Outil de planification stratégique qui vise à intégrer les principes du développement durable dans l'ensemble des activités du ministère
- It is within the context of law on sustainable development and governmental strategy of sustainable development 2023-2028
Plan d'action ministériel en développement durable 2024-2027: Enjeux
- The analysis includes climate change, biodiversity, management of natural resources, and social equity
Plan d'action ministériel en développement durable 2024-2027: Orientations stratégiques
- Intended objectives were reduce our environmental footprint, grow a circular green economy, increase social equality and quality of life, and promoting responsible governance
Plan d'action ministériel en développement durable 2024-2027: Axe 1 Environnement
- The first goal was to diminish greenhouse gas emission via reduction of energy used
- Another goal was to preserve biodiversity via protection habits
Plan d'action ministériel en développement durable 2024-2027: Axe 2 Économie
- The first objective was to support the green innovation via new project creation
- The second goal was to promote responsible consumption
Plan d'action ministériel en développement durable 2024-2027: Axe 3 Social
- The first goal was to improve quality of life with affordable housing
- The second goal was to encourage social equality via support for local communities
Plan d'action ministériel en développement durable 2024-2027: Gouvernance
- The structure includes the sustainable development commitee for integrated and responsible developement
Plan d'action ministériel en développement durable 2024-2027: Conclusion
- This sustainability plan means committed to a strong and responsible future via accountability to our partners.
Algorithmic Trading: quantitative Strategy Development
- The strategy development process includes idea, collection, backtesting, paper, live, and monitoring trades
Algorithmic Trading: Where to look for trading ideas
- Idea generation include academic, broker, news, filings, data, experience, and common sense research
- To consider: universe, market microstructures, cost, risk, capacity, and scalability
Algorithmic Trading: Data Collection
- Common data sources include broker, vendor, scraping, fillings, and government files and releases
- To consider: cost, coverage, update frequency, and adjust delivery frequency
Algorithmic Trading: Backtesting Implementation
- Backtesting platforms can be proprietary, commercial or open source
- Consider realism, speed, flexibility and cost
Algorithmic Trading: Vectorized vs Event Driven Backtesting
- Vectorized are faster, but less flexible, and harder to debug.
- Event driven are slower, but more flexible, and easier to debug.
Algorithmic Trading: Potential Pitfalls
- Potential pitfalls include look-ahead bias, data mining bias, overfitting and survivorship
Algorithmic Trading: Paper Trade
- Considerations for paper trading include realism, execution, monitoring, and record keeping
Algorithmic Trading: Risk management
- Managing risk comes from position sizing, diversification, hedging, and stress testing
Algorithmic Trading: Strategy Monitoring
- How well is the startegy performing, handling risk, and able to avoid adverse events
Algorithmic Trading: Mean Reversion Models
- Common models include pairs trading, statistical arbitrage, index arbitrage, and reverting volecity
Algorithmic Trading: Trend Following and Machine Learning
- Trend following comes from moving averages crossover and breakout
- Machine learning is from supervised (regression) and unsupervised (clustering) learning
Physics - Vectors: Core concept
- Vectors have magnitude, direction, and sense, used for vector physical quantities.
Physics - Vectors: Vector components
- A vector $\vec{A}$ is bidimensional. the components $A_x$ and $A_y$ form the equation $\qquad \vec{A} = (A_x, A_y)$
- The magnitude is written with $|\vec{A}| = \sqrt{A_x^2 + A_y^2}$
- The angled direction in relation to the axis $x$ is $\qquad \theta = \arctan\left(\frac{A_y}{A_x}\right)$
Physics - Vectors: Sums, products, and direction of vectors
- Given vectors $\vec{A} = (A_x, A_y)$ and $\vec{B} = (B_x, B_y)$, this forms the $\qquad \vec{A} + \vec{B} = (A_x + B_x, A_y + B_y)$
- Scalar products can be defined as $\qquad \vec{A} \cdot \vec{B} = |\vec{A}| |\vec{B}| \cos(\theta)$
- Vectors can also be calculated as $\qquad \vec{A} \cdot \vec{B} = A_x B_x + A_y B_y$
- Results in the vector product in $\qquad |\vec{A} \times \vec{B}| = |\vec{A}| |\vec{B}| \sin(\theta)$
Cardiovascular System - Heart Sounds
- S1 (lub) is the sound of closing atrioventricular valve which marks start of systole
- S2 (dub) is the sound of closing semilunar valves which marks start of diastole
Cardiovascular System - Abnormal Heart Sounds
- Abnormal: S3 sounds like ventricular gallop which occur after S2 and indicates increased pressure
- S4 (atrial gallop) occurs before S1 and indicates s stiff ventricle
- Murmurs sounds are from tubulent blood, graded on a scale of I-VI
Cardiovascular System - Electrocardiogram (ECG/EKG)
- P wave is the atrial depolarization and QRS complex is the ventricular
- T wave is the ventricular repolarization
Cardiovascular System - Intervals
- PR interval is how long it take to travel to ventricles where QT interval is the time to depolarize
Cardiovascular System - Heart issues
- Fast hearts are Tachycardia (> 100 bpm) or Bradycardia (< 60 bpm)
- Atrial fibrillation is when rapid irregular activity where ventricular is life threatening
Cardiovascular System - Blood Pressure
- The pressure of flood against artery. measure the systolic & diastolic
Cardiovascular System - Blood Pressure Categories
Category | Systolic (mmHg) | Diastolic (mmHg) |
---|---|---|
Normal | < 120 | < 80 |
Elevated | 120-129 | < 80 |
Hypertension Stage 1 | 130-139 | 80-89 |
Hypertension Stage 2 | > 140 | > 90 |
Hypertensive Crisis | > 180 | > 120 |
Cardiovascular System - Cardiac Output
- How much blood does the heart pump at each min, the calculation is CO = SV x HR
- Normally valued at is 4 to 8 L
Cardiovascular System - Law
- Starling's is the more during the more forceful you can contract during
- Ensures that pump has the same result to make sure is recieves
Cardiovascular System - Circulation
- Blood flow is between heart and veins
Linear Algebra and Matrix Analysis - Vectors, Matrices, and Operations
- A vector is an ordered list of numbers while a matrix is a rectangular array
- Operations include addition, scalar multiplication, and matrix multiplication.
Linear Algebra and Matrix Analysis - Transposition and Inversion
- The transpose is obtained by swapping rows and columns.
- The inverse satisfies, where is the identity matrix.
Linear Algebra and Matrix Analysis - Linear Equations
- A system of linear equations is a set of linear equations where methods of solution include substitution, elimination, and matrix
- Linear equations can be subsituted into different equations to have more variable
Linear Algebra and Matrix Analysis - Vector Spaces: Essential definitions and examples
- A vector space (called vectors) consist of adittion and multiplied by scalars.
- Examples include $\mathbb{R}^n$ (n-dimensional vectors with real numbers), $\mathbb{C}^n$ (n-dimensional vectors with complex numbers), and polynomials of degree <= n.
Linear Algebra and Matrix Analysis - Eigenvalues and Eigenvectors
- An eigenvector of the matrix $A$ is non zero satisfies $Ax = \lambda x$ Where $\lambda x$ is the value.
- Characterized by polynomial equation: $\det(A - \lambda I) = 0$.
- Matrices can also use diagnolization to simplify complex linear combination
Linear Algebra and Matrix Analysis - Matrix Decompositions
- LU Decomposition: Factorizing it into a lower triangular matrix $L$
- QR Decomposition: Factorizing $A$ into an orthogonal matrix $Q$ and an upper triangular matrix $R$, s.t. $A = QR$.
- Singular Value Decomposition (SVD): $A = U\Sigma V^T$, where U and V are orthogonal matrices, and $\Sigma$ is a diagonal matrix.
- All matrix have strong used to perform simple operations
Chemical Equilibrium - definition & Factors
- For the reaction $aA + bB \rightarrow cC + dD$, the rate $= -\frac{1}{a}\frac{d[A]}{dt}$
Chemical Equilibrium - factors of reaction rate
- Concentrion, Temp, Catalyst, Solid Reactant, Pressue Gas.
Integrated Rate Laws
- In different order the result change
- Rate = $k[A]^1 = k[A]$
- Rate $= k[A]^2$
Chemical Equilibrium - Molecular step
- The series of steps with the reaction mechanism
Chemical Equilibrium - Activation Energy and Catalysis
- Use $ln(\frac{k_2}{k_1}) = \frac{E_a}{R}(\frac{1}{T_1} - \frac{1}{T_2})$ to determine activation
- Homogeneous Catalysis in the catalyst phase
Static Equilibrium - Tension Examples: Basic explanation
- Calculating the tension in every object for a 50kg sign and with a force $22^\circ$
Static Equilibrium - How to solve tension
- Add all the tension in the object and the solution show below the equation
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