Chemical Kinetics: Reaction Rates and Rate Law

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Questions and Answers

Which of the following best describes the function of Cas9 in the original CRISPR-Cas9 system?

  • It serves as a template for synthesizing viral DNA.
  • It matches viral DNA to facilitate immune response.
  • It is a nuclease that cuts DNA. (correct)
  • It holds CRISPR RNA in place.

In gene therapy, what is the primary role of a vector?

  • To remove the malfunctioning gene from the cell.
  • To penetrate the cell membrane directly.
  • To deliver the correct gene into the right cell and tissues. (correct)
  • To replicate the malfunctioning gene.

Which characteristic makes a genetic condition a good candidate for gene therapy?

  • When the mutation is caused by a single gene. (correct)
  • When the mutated gene is dominant.
  • When the condition is influenced by environmental factors.
  • When the condition is caused by multiple genes.

What distinguishes genome editing from traditional drug-based approaches?

<p>Genome editing aims to fix the genetic problem at its source. (D)</p> Signup and view all the answers

If gene editing is performed on stem cells, what is the expected outcome?

<p>The stem cells will develop and produce healthy new cells. (B)</p> Signup and view all the answers

For therapeutic cloning to be effective, what is the primary goal?

<p>To grow healthy tissue to replace injured or damaged tissues. (D)</p> Signup and view all the answers

What is the function of CRISPR RNA in the modified CRISPR-Cas9 system?

<p>To correspond to the gene we want to cut. (A)</p> Signup and view all the answers

In Somatic Cell Nuclear Transfer (SCNT), why are somatic cells, not gametes (sperm/egg), used?

<p>Somatic cells contain the full diploid set of chromosomes. (B)</p> Signup and view all the answers

For a gene that codes for a protein, what happens if the protein is not functioning properly?

<p>A genetic disorder may result. (D)</p> Signup and view all the answers

What is pre-implantation diagnosis (PGD) primarily used for in reproductive technology?

<p>To ensure the baby does not have genetic or chromosomal diseases. (D)</p> Signup and view all the answers

In the context of gene therapy, what does 'ex vivo' mean?

<p>Cells are removed from the patient, treated, and then returned. (A)</p> Signup and view all the answers

Why is it important to understand the biology of a disorder when considering gene therapy?

<p>To ensure that the introduced gene addresses the underlying issue. (A)</p> Signup and view all the answers

Which of the following is true about 'Artificial Embryo Twinning'?

<p>Mimics natural process that makes twins. (D)</p> Signup and view all the answers

In Cystic Fibrosis, a good candidate for gene therapy, what happens if the gene is mutated?

<p>Does not move ions (B)</p> Signup and view all the answers

Which of the following is true about 'repeat' segments of DNA in CRISPR?

<p>They are all identical (B)</p> Signup and view all the answers

Flashcards

Gene therapy

To penetrate cells and replace, repair or remove genes that are malfunctioning

Genome editing

Cut DNA to replace mutated genes in stem cells to develop/produce healthy cells.

Genes code for proteins

If a correct functioning protein is coded, then cure disorder. If protein isn't functioning, genetic disorder

Vectors in gene therapy

Viruses that are molecular tools and deliver systems to get right gene into right cell in right tissues

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Ex vivo gene therapy

Cells are removed from patient, genes added to the cells and then returned to patient

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Good candidate for gene therapy

Mutation caused by a single gene and know which gene causes the problem, must have a copy of the good gene, must understand the biology of the disorder, and must deliver the gene to the correct cells.

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Cystic Fibrosis

Affects lungs, pancreas and small intestine and causes abnormal mucus secretions

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Base pair deletion

Normal gene is 4,443, mutated gene is 4,440

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Somatic Cell Nuclear Transfer

Method used to make genetically the same or identical animal. Taking nucleus out egg cell and putting somatic cell in.

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Clones

Organisms that are exact genetic copies. DNA is identical and it happens naturally in twins.

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Artificial Embryo Twinning

Mimics natural process that makes twins. Splits into 2 and each half develops on own to complete individual.

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CRISPR

Found in bacteria as an immune response against virus

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The CRISPR System

Repeats are short segments of DNA that are Palendrones and are identical. Spacer DNA is not identical but matches to viral DNA

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Cas genes

Cas genes make cas proteins or Helicases: Unwind DNA and Nucleases: Cut DNA

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In Vitro Fertilization (IVF)

Egg removed from woman, joined with sperm in test tube, and zygote is formed, divides to form embryo. Embryo inserted to surrogate.

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Study Notes

Chemical Kinetics: Reaction Rate

  • Rate of reaction is the rate of decrease in reactant concentration or the rate of increase in product concentration
  • For a reaction $A + B \rightarrow C + D$, the rate r is given by $r = -\frac{d[A]}{dt} = -\frac{d[B]}{dt} = \frac{d[C]}{dt} = \frac{d[D]}{dt}$.

Chemical Kinetics: Average Rate

  • Average rate $r_{av}$ is expressed as $r_{av} = -\frac{\Delta[R]}{\Delta t} = \frac{\Delta[P]}{\Delta t}$

Chemical Kinetics: Instantaneous Rate

  • Instantaneous rate $r_{inst}$ is expressed as $r_{inst} = \lim_{\Delta t \to 0} -\frac{\Delta[R]}{\Delta t} = \lim_{\Delta t \to 0} \frac{\Delta[P]}{\Delta t}$.
  • $r_{inst}$ can also be written as $r_{inst} = -\frac{d[R]}{dt} = \frac{d[P]}{dt}$

Chemical Kinetics: Rate Law Expression

  • For a reaction $aA + bB \rightarrow cC + dD$, the rate r is proportional to $[A]^x [B]^y$.
  • The rate law is given by $r = k[A]^x [B]^y$, where k is the rate constant, [A] and [B] are reactant concentrations, x and y are orders with respect to A and B, respectively, and (x + y) is the overall order of reaction.
  • x and y must be determined experimentally and may not be equal to the stoichiometric coefficients a and b.

Chemical Kinetics: Units of Rate Constant

  • The rate constant k can be expressed as $k = \frac{r}{[A]^x [B]^y}$.
  • $k = \frac{mol : L^{-1} s^{-1}}{(mol : L^{-1})^n}$ leading to $k = mol^{1-n} L^{n-1} s^{-1}$, where n is the order of reaction.
  • For a zeroth-order reaction, the units of k are $mol : L^{-1} s^{-1}$.
  • For a first-order reaction, the units of k are $s^{-1}$.
  • For a second-order reaction, the units of k are $mol^{-1} L s^{-1}$.
  • For a third-order reaction, the units of k are $mol^{-2} L^2 s^{-1}$.
  • For an nth-order reaction, the units of k are $mol^{1-n} L^{n-1} s^{-1}$.

Chemical Kinetics: Factors Affecting Reaction Rate

  • Concentration, temperature, and catalysts affect reaction rate.

Chemical Kinetics: Zero Order Reaction

  • The rate law is $r = k[A]^0 = k$.
  • The differential rate equation is $-\frac{d[R]}{dt} = k$.
  • The integrated rate law is $[R]_t = -kt + [R]_0$, where $[R]_0$ is the initial concentration.
  • Half life is $t_{1/2} = \frac{[R]_0}{2k}$.

Chemical Kinetics: First Order Reaction

  • The rate law is $r = k[A]^1 = k[A]$.
  • The differential rate equation is $-\frac{d[R]}{dt} = k[R]$.
  • The integrated rate law is $k = \frac{2.303}{t} log \frac{[R]_0}{[R]_t}$.
  • Half life is $t_{1/2} = \frac{0.693}{k}$.

Chemical Kinetics: Pseudo First Order Reaction

  • For the reaction $CH_3COOC_2H_5 + H_2O \xrightarrow{H^+} CH_3COOH + C_2H_5OH$, the rate is $r = k[CH_3COOC_2H_5][H_2O]$.
  • Since $[H_2O]$ is constant, $r = k'[CH_3COOC_2H_5]$, where $k' = k[H_2O]$.

Chemical Kinetics: Arrhenius Equation

  • The Arrhenius equation is $k = Ae^{-E_a/RT}$, where $E_a$ is activation energy, R is the gas constant ($8.314 : J K^{-1} mol^{-1}$), A is the Arrhenius factor, and T is temperature.
  • Determining the relationship between two temperatures and rate constants is done with $\log \frac{k_2}{k_1} = \frac{E_a}{2.303R} [\frac{1}{T_1} - \frac{1}{T_2}]$.

Chemical Kinetics: Effect of Catalyst

  • A catalyst increases the rate of a reaction without getting consumed
  • Catalysts work by providing an alternative pathway or reaction mechanism to lowering the activation energy between reactants and products

Plan d'action ministériel en développement durable 2024-2027: Message de la ministre

  • Sustainable development forms the core concern and guides actions for a future where the environment is protected, the economy is prosperous, and society is equitable.
  • The Plan d'action ministériel en développement durable 2024-2027 demonstrates on commitment to include principles of sustainable development in all activities.
  • The plan was built around specific, clear, actions to progress for a more green and prosperous quebec.
  • Dedicated to meet environmental, economic, and social challenges.

Plan d'action ministériel en développement durable 2024-2027: Table des matières

  • The table of contents includes a presentation, issues and orientations, objectives and measures, and governance, monitoring and accountability

Plan d'action ministériel en développement durable 2024-2027: Présentation

  • Outil de planification stratégique qui vise à intégrer les principes du développement durable dans l'ensemble des activités du ministère
  • It is within the context of law on sustainable development and governmental strategy of sustainable development 2023-2028

Plan d'action ministériel en développement durable 2024-2027: Enjeux

  • The analysis includes climate change, biodiversity, management of natural resources, and social equity

Plan d'action ministériel en développement durable 2024-2027: Orientations stratégiques

  • Intended objectives were reduce our environmental footprint, grow a circular green economy, increase social equality and quality of life, and promoting responsible governance

Plan d'action ministériel en développement durable 2024-2027: Axe 1 Environnement

  • The first goal was to diminish greenhouse gas emission via reduction of energy used
  • Another goal was to preserve biodiversity via protection habits

Plan d'action ministériel en développement durable 2024-2027: Axe 2 Économie

  • The first objective was to support the green innovation via new project creation
  • The second goal was to promote responsible consumption

Plan d'action ministériel en développement durable 2024-2027: Axe 3 Social

  • The first goal was to improve quality of life with affordable housing
  • The second goal was to encourage social equality via support for local communities

Plan d'action ministériel en développement durable 2024-2027: Gouvernance

  • The structure includes the sustainable development commitee for integrated and responsible developement

Plan d'action ministériel en développement durable 2024-2027: Conclusion

  • This sustainability plan means committed to a strong and responsible future via accountability to our partners.

Algorithmic Trading: quantitative Strategy Development

  • The strategy development process includes idea, collection, backtesting, paper, live, and monitoring trades

Algorithmic Trading: Where to look for trading ideas

  • Idea generation include academic, broker, news, filings, data, experience, and common sense research
  • To consider: universe, market microstructures, cost, risk, capacity, and scalability

Algorithmic Trading: Data Collection

  • Common data sources include broker, vendor, scraping, fillings, and government files and releases
  • To consider: cost, coverage, update frequency, and adjust delivery frequency

Algorithmic Trading: Backtesting Implementation

  • Backtesting platforms can be proprietary, commercial or open source
  • Consider realism, speed, flexibility and cost

Algorithmic Trading: Vectorized vs Event Driven Backtesting

  • Vectorized are faster, but less flexible, and harder to debug.
  • Event driven are slower, but more flexible, and easier to debug.

Algorithmic Trading: Potential Pitfalls

  • Potential pitfalls include look-ahead bias, data mining bias, overfitting and survivorship

Algorithmic Trading: Paper Trade

  • Considerations for paper trading include realism, execution, monitoring, and record keeping

Algorithmic Trading: Risk management

  • Managing risk comes from position sizing, diversification, hedging, and stress testing

Algorithmic Trading: Strategy Monitoring

  • How well is the startegy performing, handling risk, and able to avoid adverse events

Algorithmic Trading: Mean Reversion Models

  • Common models include pairs trading, statistical arbitrage, index arbitrage, and reverting volecity

Algorithmic Trading: Trend Following and Machine Learning

  • Trend following comes from moving averages crossover and breakout
  • Machine learning is from supervised (regression) and unsupervised (clustering) learning

Physics - Vectors: Core concept

  • Vectors have magnitude, direction, and sense, used for vector physical quantities.

Physics - Vectors: Vector components

  • A vector $\vec{A}$ is bidimensional. the components $A_x$ and $A_y$ form the equation $\qquad \vec{A} = (A_x, A_y)$
  • The magnitude is written with $|\vec{A}| = \sqrt{A_x^2 + A_y^2}$
  • The angled direction in relation to the axis $x$ is $\qquad \theta = \arctan\left(\frac{A_y}{A_x}\right)$

Physics - Vectors: Sums, products, and direction of vectors

  • Given vectors $\vec{A} = (A_x, A_y)$ and $\vec{B} = (B_x, B_y)$, this forms the $\qquad \vec{A} + \vec{B} = (A_x + B_x, A_y + B_y)$
  • Scalar products can be defined as $\qquad \vec{A} \cdot \vec{B} = |\vec{A}| |\vec{B}| \cos(\theta)$
  • Vectors can also be calculated as $\qquad \vec{A} \cdot \vec{B} = A_x B_x + A_y B_y$
  • Results in the vector product in $\qquad |\vec{A} \times \vec{B}| = |\vec{A}| |\vec{B}| \sin(\theta)$

Cardiovascular System - Heart Sounds

  • S1 (lub) is the sound of closing atrioventricular valve which marks start of systole
  • S2 (dub) is the sound of closing semilunar valves which marks start of diastole

Cardiovascular System - Abnormal Heart Sounds

  • Abnormal: S3 sounds like ventricular gallop which occur after S2 and indicates increased pressure
  • S4 (atrial gallop) occurs before S1 and indicates s stiff ventricle
  • Murmurs sounds are from tubulent blood, graded on a scale of I-VI

Cardiovascular System - Electrocardiogram (ECG/EKG)

  • P wave is the atrial depolarization and QRS complex is the ventricular
  • T wave is the ventricular repolarization

Cardiovascular System - Intervals

  • PR interval is how long it take to travel to ventricles where QT interval is the time to depolarize

Cardiovascular System - Heart issues

  • Fast hearts are Tachycardia (> 100 bpm) or Bradycardia (< 60 bpm)
  • Atrial fibrillation is when rapid irregular activity where ventricular is life threatening

Cardiovascular System - Blood Pressure

  • The pressure of flood against artery. measure the systolic & diastolic

Cardiovascular System - Blood Pressure Categories

Category Systolic (mmHg) Diastolic (mmHg)
Normal < 120 < 80
Elevated 120-129 < 80
Hypertension Stage 1 130-139 80-89
Hypertension Stage 2 > 140 > 90
Hypertensive Crisis > 180 > 120

Cardiovascular System - Cardiac Output

  • How much blood does the heart pump at each min, the calculation is CO = SV x HR
  • Normally valued at is 4 to 8 L

Cardiovascular System - Law

  • Starling's is the more during the more forceful you can contract during
  • Ensures that pump has the same result to make sure is recieves

Cardiovascular System - Circulation

  • Blood flow is between heart and veins

Linear Algebra and Matrix Analysis - Vectors, Matrices, and Operations

  • A vector is an ordered list of numbers while a matrix is a rectangular array
  • Operations include addition, scalar multiplication, and matrix multiplication.

Linear Algebra and Matrix Analysis - Transposition and Inversion

  • The transpose is obtained by swapping rows and columns.
  • The inverse satisfies, where is the identity matrix.

Linear Algebra and Matrix Analysis - Linear Equations

  • A system of linear equations is a set of linear equations where methods of solution include substitution, elimination, and matrix
  • Linear equations can be subsituted into different equations to have more variable

Linear Algebra and Matrix Analysis - Vector Spaces: Essential definitions and examples

  • A vector space (called vectors) consist of adittion and multiplied by scalars.
  • Examples include $\mathbb{R}^n$ (n-dimensional vectors with real numbers), $\mathbb{C}^n$ (n-dimensional vectors with complex numbers), and polynomials of degree <= n.

Linear Algebra and Matrix Analysis - Eigenvalues and Eigenvectors

  • An eigenvector of the matrix $A$ is non zero satisfies $Ax = \lambda x$ Where $\lambda x$ is the value.
  • Characterized by polynomial equation: $\det(A - \lambda I) = 0$.
  • Matrices can also use diagnolization to simplify complex linear combination

Linear Algebra and Matrix Analysis - Matrix Decompositions

  • LU Decomposition: Factorizing it into a lower triangular matrix $L$
  • QR Decomposition: Factorizing $A$ into an orthogonal matrix $Q$ and an upper triangular matrix $R$, s.t. $A = QR$.
  • Singular Value Decomposition (SVD): $A = U\Sigma V^T$, where U and V are orthogonal matrices, and $\Sigma$ is a diagonal matrix.
  • All matrix have strong used to perform simple operations

Chemical Equilibrium - definition & Factors

  • For the reaction $aA + bB \rightarrow cC + dD$, the rate $= -\frac{1}{a}\frac{d[A]}{dt}$

Chemical Equilibrium - factors of reaction rate

  • Concentrion, Temp, Catalyst, Solid Reactant, Pressue Gas.

Integrated Rate Laws

  • In different order the result change
  • Rate = $k[A]^1 = k[A]$
  • Rate $= k[A]^2$

Chemical Equilibrium - Molecular step

  • The series of steps with the reaction mechanism

Chemical Equilibrium - Activation Energy and Catalysis

  • Use $ln(\frac{k_2}{k_1}) = \frac{E_a}{R}(\frac{1}{T_1} - \frac{1}{T_2})$ to determine activation
  • Homogeneous Catalysis in the catalyst phase

Static Equilibrium - Tension Examples: Basic explanation

  • Calculating the tension in every object for a 50kg sign and with a force $22^\circ$

Static Equilibrium - How to solve tension

  • Add all the tension in the object and the solution show below the equation

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